ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl30c02 |
|---|---|
| Clone Library Name | barley_pub |
>CXCR3_BOVIN (Q5MD61) C-X-C chemokine receptor type 3 (CXC-R3) (CXCR-3)| (Interferon-inducible protein 10 receptor) (IP-10 receptor) Length = 366 Score = 33.9 bits (76), Expect = 0.16 Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 4/104 (3%) Frame = -3 Query: 343 ARCLSPALVAPSPGGAMRMRLITTVAVAAVLCFTACVAVFHPDR---VGVLAAPVKRYLF 173 AR L+ LV+ MRL+ V VA LC+T V D +G LA R Sbjct: 234 ARILAVLLVSRGQRRLRAMRLVVVVVVAFALCWTPYHLVVLVDTLMDLGALARNCGRESS 293 Query: 172 SDCPPWNHSGC*IRLTFLTCCCSPLCHVYTVVS-RHRLFVSRIK 44 D SG + ++ CC +PL + + V R R++V ++ Sbjct: 294 VDIAKSVTSG----MGYMHCCLNPLLYAFVGVKFRERMWVLLVR 333
>CXCR3_CAPHI (Q867B2) C-X-C chemokine receptor type 3 (CXC-R3) (CXCR-3)| (Interferon-inducible protein 10 receptor) (IP-10 receptor) Length = 366 Score = 33.1 bits (74), Expect = 0.28 Identities = 31/100 (31%), Positives = 44/100 (44%), Gaps = 4/100 (4%) Frame = -3 Query: 343 ARCLSPALVAPSPGGAMRMRLITTVAVAAVLCFTACVAVFHPDR---VGVLAAPVKRYLF 173 AR L+ LV+ MRL+ V VA LC+T V D +G LA R Sbjct: 234 ARILTVLLVSRGQRRLRAMRLVVVVVVAFALCWTPYHLVVLVDTLMDLGALARNCGRESR 293 Query: 172 SDCPPWNHSGC*IRLTFLTCCCSPLCHVYTVVS-RHRLFV 56 D SG + ++ CC +PL + + V R R++V Sbjct: 294 VDVAKSVTSG----MGYMHCCLNPLLYAFVGVKFRERMWV 329
>CXCR3_CANFA (Q5KSK8) C-X-C chemokine receptor type 3 (CXC-R3) (CXCR-3)| (Interferon-inducible protein 10 receptor) (IP-10 receptor) Length = 365 Score = 32.7 bits (73), Expect = 0.37 Identities = 31/100 (31%), Positives = 44/100 (44%), Gaps = 4/100 (4%) Frame = -3 Query: 343 ARCLSPALVAPSPGGAMRMRLITTVAVAAVLCFTACVAVFHPDR---VGVLAAPVKRYLF 173 AR L+ LV+ RMRL+ V VA LC+T V D +G L R Sbjct: 236 ARILAVLLVSRGQRRQRRMRLVVVVVVAFALCWTPYHLVVLVDTLMDLGALDRNCGRESR 295 Query: 172 SDCPPWNHSGC*IRLTFLTCCCSPLCHVYTVVS-RHRLFV 56 D SG L ++ CC +PL + + V R R+++ Sbjct: 296 VDVAKSVTSG----LGYMHCCLNPLLYAFVGVKFRERMWM 331
>CXCR3_RAT (Q9JII9) C-X-C chemokine receptor type 3 (CXC-R3) (CXCR-3)| (Interferon-inducible protein 10 receptor) (IP-10 receptor) Length = 367 Score = 30.8 bits (68), Expect = 1.4 Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 3/92 (3%) Frame = -3 Query: 343 ARCLSPALVAPSPGGAMRMRLITTVAVAAVLCFTACVAVFHPD---RVGVLAAPVKRYLF 173 A L+ LV+ MRL+ V VA +C+T V D VGVLA R Sbjct: 235 AHILAVLLVSRGQRRFRAMRLVVVVVVAFAVCWTPYHLVVLVDILMDVGVLARNCGRESH 294 Query: 172 SDCPPWNHSGC*IRLTFLTCCCSPLCHVYTVV 77 D SG + ++ CC +PL + + V Sbjct: 295 VDVAKSVTSG----MGYMHCCLNPLLYAFVGV 322
>CXCR3_HUMAN (P49682) C-X-C chemokine receptor type 3 (CXC-R3) (CXCR-3)| (Interferon-inducible protein 10 receptor) (IP-10 receptor) (CKR-L2) (CD183 antigen) (G protein-coupled receptor 9) Length = 368 Score = 30.4 bits (67), Expect = 1.8 Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 4/100 (4%) Frame = -3 Query: 343 ARCLSPALVAPSPGGAMRMRLITTVAVAAVLCFTACVAVFHPD---RVGVLAAPVKRYLF 173 A L+ LV+ MRL+ V VA LC+T V D +G LA R Sbjct: 236 AHILAVLLVSRGQRRLRAMRLVVVVVVAFALCWTPYHLVVLVDILMDLGALARNCGRESR 295 Query: 172 SDCPPWNHSGC*IRLTFLTCCCSPLCHVYTVVS-RHRLFV 56 D SG L ++ CC +PL + + V R R+++ Sbjct: 296 VDVAKSVTSG----LGYMHCCLNPLLYAFVGVKFRERMWM 331
>PHYK2_SOYBN (Q2N2K2) Probable phytol kinase 2, chloroplast precursor (EC| 2.7.-.-) Length = 292 Score = 30.0 bits (66), Expect = 2.4 Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 2/44 (4%) Frame = -3 Query: 325 ALVAPSPGGAMRMRLITTVAVAAVLCFTACV--AVFHPDRVGVL 200 A +APSPG +MR RL+ V AV A AV V VL Sbjct: 26 AALAPSPGSSMRRRLLLGVGTPAVAALAAAAPPAVLQDGAVTVL 69
>SPL7_ARATH (Q8S9G8) Squamosa promoter-binding-like protein 7| Length = 801 Score = 30.0 bits (66), Expect = 2.4 Identities = 15/38 (39%), Positives = 21/38 (55%) Frame = -3 Query: 289 MRLITTVAVAAVLCFTACVAVFHPDRVGVLAAPVKRYL 176 M LI T AV CF C ++HP++V LA ++ L Sbjct: 764 MFLIATFAV----CFAVCAVLYHPNKVTQLAVAIRMRL 797
>PHYK_MAIZE (Q2N2K4) Probable phytol kinase, chloroplast precursor (EC 2.7.-.-)| Length = 303 Score = 30.0 bits (66), Expect = 2.4 Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 2/44 (4%) Frame = -3 Query: 325 ALVAPSPGGAMRMRLITTVAVAAVLCFTACV--AVFHPDRVGVL 200 A +APSPG +MR RL+ V AV A AV V VL Sbjct: 26 AALAPSPGSSMRRRLLLGVGTPAVAALAAAAPPAVLQDGAVTVL 69
>ZFP13_MOUSE (P10754) Zinc finger protein 13 (Zfp-13) (Krox-8 protein)| Length = 512 Score = 29.6 bits (65), Expect = 3.1 Identities = 14/41 (34%), Positives = 20/41 (48%) Frame = +2 Query: 221 VEHGNTGRETQYSSHCHSRDESHSHSTTWRRSNQGGTKTSC 343 V G+TG++T C HSH T RR++ G +C Sbjct: 256 VPDGDTGKKTYKCEQCGKGFSWHSHLVTHRRTHTGEKPYTC 296
>CDA1_SCHPO (O13842) Chitin deacetylase 1 (EC 3.5.1.41)| Length = 320 Score = 29.6 bits (65), Expect = 3.1 Identities = 14/37 (37%), Positives = 19/37 (51%) Frame = +2 Query: 101 GRATTSQES*SNLTSTMVPWGAVAKQVPLYWSCKHPY 211 GR Q+ ++TS W A +Q+ WS KHPY Sbjct: 282 GRFRGLQKLMEHITSKEGVWVATREQIAQAWSAKHPY 318
>CXCR3_MOUSE (O88410) C-X-C chemokine receptor type 3 (CXC-R3) (CXCR-3)| (Interferon-inducible protein 10 receptor) (IP-10 receptor) Length = 367 Score = 29.3 bits (64), Expect = 4.0 Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 3/92 (3%) Frame = -3 Query: 343 ARCLSPALVAPSPGGAMRMRLITTVAVAAVLCFTACVAVFHPD---RVGVLAAPVKRYLF 173 A L+ LV+ MRL+ V A +C+T V D VGVLA R Sbjct: 235 AHILAVLLVSRGQRRFRAMRLVVVVVAAFAVCWTPYHLVVLVDILMDVGVLARNCGRESH 294 Query: 172 SDCPPWNHSGC*IRLTFLTCCCSPLCHVYTVV 77 D SG + ++ CC +PL + + V Sbjct: 295 VDVAKSVTSG----MGYMHCCLNPLLYAFVGV 322
>UREE_RHILO (Q98CZ2) Urease accessory protein ureE| Length = 196 Score = 29.3 bits (64), Expect = 4.0 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = +2 Query: 209 YSIWVEHGNTGRETQYSSHCHSRDESHSHS 298 YS +HG+ + +H H+ ESHSHS Sbjct: 153 YSGGHDHGHAHAHSHAEAHSHAHGESHSHS 182
>TESB_HAEIN (P44498) Acyl-CoA thioesterase II (EC 3.1.2.-) (TEII)| Length = 286 Score = 28.9 bits (63), Expect = 5.3 Identities = 20/71 (28%), Positives = 32/71 (45%) Frame = +3 Query: 9 KMQVCIVHWKRYFILDTNNLCLDTTVYTWHRGEQQQVKKVNLI*HPLWFHGGQSLNKYLF 188 K+Q C++ YF ++ C+ T ++ +G Q+ KV I H +WFH LN + Sbjct: 193 KIQQCLL---AYF---SDFHCILTALHPHEKGFLQKGMKVATIDHSIWFHRPFDLNHWHL 246 Query: 189 TGAASTPTLSG 221 S G Sbjct: 247 HAIESNNAFGG 257
>PCF11_HUMAN (O94913) Pre-mRNA cleavage complex 2 protein Pcf11 (Pre-mRNA| cleavage complex II protein Pcf11) (Fragment) Length = 1654 Score = 28.9 bits (63), Expect = 5.3 Identities = 13/33 (39%), Positives = 16/33 (48%) Frame = +2 Query: 242 RETQYSSHCHSRDESHSHSTTWRRSNQGGTKTS 340 R + S H H +D+SH NQ TKTS Sbjct: 397 RLNRISQHSHGKDQSHRKEFLMNTLNQSDTKTS 429
>WHI3_YEAST (P34761) Protein WHI3| Length = 661 Score = 28.5 bits (62), Expect = 6.9 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%) Frame = +3 Query: 63 NLCLDTTVYTWHRGEQQQVKKVNLI*HPLWFHGG--QSLNKYLFTGAASTPTLSGWNTA 233 +L +++T+ T G+ ++ I +W G S+N Y+ T STPTL NT+ Sbjct: 301 DLSVESTIQTSDIGKSFLLRDNTEINEKIWGTSGIPSSINGYMSTPQPSTPTLEWGNTS 359
>UVRC_VIBVY (Q7MM39) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 610 Score = 28.1 bits (61), Expect = 9.0 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%) Frame = +2 Query: 269 HSRDESHSHSTTWRRSNQGGT-KTSCI 346 H RDESH+H+ R+ +G T KTS + Sbjct: 532 HIRDESHNHAIAGHRAKRGKTRKTSAL 558
>UVRC_VIBVU (Q8D8C7) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 610 Score = 28.1 bits (61), Expect = 9.0 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%) Frame = +2 Query: 269 HSRDESHSHSTTWRRSNQGGT-KTSCI 346 H RDESH+H+ R+ +G T KTS + Sbjct: 532 HIRDESHNHAIAGHRAKRGKTRKTSAL 558
>LPHN1_BOVIN (O97831) Latrophilin-1 precursor (Calcium-independent| alpha-latrotoxin receptor 1) Length = 1472 Score = 28.1 bits (61), Expect = 9.0 Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 14/104 (13%) Frame = -3 Query: 307 PGGAMRMRLITTVAVAAVLCFTACVAVFHPDRVGVLAAPVKRYLFSDCPPWNHS------ 146 PGGA + + + V A++ ++ V + P V K + ++C WN+S Sbjct: 755 PGGASLV-VNSQVIAASINKESSRVFLMDPVIFTVAHLEAKNHFNANCSFWNYSERSMLG 813 Query: 145 -----GC*I---RLTFLTCCCSPLCHVYTVVSRHRLFVSRIKYL 38 GC + T TC CS L + +++ ++ RI L Sbjct: 814 YWSTQGCRLVESNKTHTTCACSHLTNFAVLMAHREIYQGRINEL 857
>KHSE_AERPE (Q9YA72) Homoserine kinase (EC 2.7.1.39) (HSK) (HK)| Length = 319 Score = 28.1 bits (61), Expect = 9.0 Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 3/74 (4%) Frame = +3 Query: 159 GGQSLNKYLFTGAASTPTLSGWNTATQAVK---HNTAATATVVMSRILIAPPGEGATKAG 329 GG S+ G S+ L G NTA +AV+ + A V + PPG G +G Sbjct: 48 GGNSVYVDEVEGKFSSGVLQGPNTAAEAVRGLLNMEGVEAEVGIRVYKGVPPGRGLGSSG 107 Query: 330 LRHLAFISGWQHCL 371 A ++ H L Sbjct: 108 ASAAAAVAAVSHAL 121
>MGA2_YEAST (P40578) Protein MGA2| Length = 1113 Score = 28.1 bits (61), Expect = 9.0 Identities = 12/36 (33%), Positives = 21/36 (58%) Frame = +2 Query: 173 KQVPLYWSCKHPYSIWVEHGNTGRETQYSSHCHSRD 280 K + + +CK YS+ +G T RE ++H HS++ Sbjct: 767 KIIKMLLNCKVNYSLRSHNGLTAREVFIANHIHSKE 802
>LPHN1_MOUSE (Q80TR1) Latrophilin-1 (Calcium-independent alpha-latrotoxin| receptor 1) (Lectomedin-2) (Fragment) Length = 1406 Score = 28.1 bits (61), Expect = 9.0 Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 14/104 (13%) Frame = -3 Query: 307 PGGAMRMRLITTVAVAAVLCFTACVAVFHPDRVGVLAAPVKRYLFSDCPPWNHS------ 146 PGGA + + + V A++ ++ V + P V K + ++C WN+S Sbjct: 690 PGGASLV-VNSQVIAASINKESSRVFLMDPVIFTVAHLEAKNHFNANCSFWNYSERSMLG 748 Query: 145 -----GC*I---RLTFLTCCCSPLCHVYTVVSRHRLFVSRIKYL 38 GC + T TC CS L + +++ ++ RI L Sbjct: 749 YWSTQGCRLVESNKTHTTCACSHLTNFAVLMAHREIYQGRINEL 792
>KE4_PONPY (Q5RFD5) Zinc transporter SLC39A7 (Solute carrier family 39 member| 7) (Histidine-rich membrane protein Ke4) Length = 469 Score = 28.1 bits (61), Expect = 9.0 Identities = 15/49 (30%), Positives = 21/49 (42%) Frame = +2 Query: 203 HPYSIWVEHGNTGRETQYSSHCHSRDESHSHSTTWRRSNQGGTKTSCIH 349 H +S HG+T E+ + H H D HSH + G + S H Sbjct: 56 HGHSHAHGHGHT-HESIWHGHTHGHDHGHSHGDLHHGHSHGHSHESLYH 103
>LPHN1_HUMAN (O94910) Latrophilin-1 precursor (Calcium-independent| alpha-latrotoxin receptor 1) (Lectomedin-2) Length = 1474 Score = 28.1 bits (61), Expect = 9.0 Identities = 27/106 (25%), Positives = 40/106 (37%), Gaps = 16/106 (15%) Frame = -3 Query: 307 PGGAMRMRLITTVAVAAVLCFTACVAVFHPDRVGVLAAPV--KRYLFSDCPPWNHS---- 146 PGG L+ V A VF D V A + K + ++C WN+S Sbjct: 753 PGGPGGASLVVNSQVIAASINKESSRVFLMDPVIFTVAHLEDKNHFNANCSFWNYSERSM 812 Query: 145 -------GC*I---RLTFLTCCCSPLCHVYTVVSRHRLFVSRIKYL 38 GC + T TC CS L + +++ ++ RI L Sbjct: 813 LGYWSTQGCRLVESNKTHTTCACSHLTNFAVLMAHREIYQGRINEL 858
>LPHN1_RAT (O88917) Latrophilin-1 precursor (Calcium-independent| alpha-latrotoxin receptor 1) (CIRL-1) Length = 1515 Score = 28.1 bits (61), Expect = 9.0 Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 14/104 (13%) Frame = -3 Query: 307 PGGAMRMRLITTVAVAAVLCFTACVAVFHPDRVGVLAAPVKRYLFSDCPPWNHS------ 146 PGGA + + + V A++ ++ V + P V K + ++C WN+S Sbjct: 755 PGGASLV-VNSQVIAASINKESSRVFLMDPVIFTVAHLEAKNHFNANCSFWNYSERSMLG 813 Query: 145 -----GC*I---RLTFLTCCCSPLCHVYTVVSRHRLFVSRIKYL 38 GC + T TC CS L + +++ ++ RI L Sbjct: 814 YWSTQGCRLVESNKTHTTCACSHLTNFAVLMAHREIYQGRINEL 857 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,666,736 Number of Sequences: 219361 Number of extensions: 1281610 Number of successful extensions: 3924 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 3643 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3908 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2336739400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
