ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl30b12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|U22450.1|HVU22450 Hordeum vulgare alpha-glucosidase mRNA, com... 626 e-176
2gb|AF118226.1|AF118226 Hordeum vulgare high pI alpha-glucosidase... 573 e-160
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
4dbj|AP004989.3| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
5dbj|AP003728.3| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
6dbj|AK121588.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 3e-11
7dbj|AK105449.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 3e-11
8dbj|AK119824.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 6e-09
9gb|AE004504.1| Pseudomonas aeruginosa PAO1, section 65 of 529 of... 46 0.093
10dbj|AP006653.1| Lotus japonicus genomic DNA, chromosome 2, clone... 46 0.093
11emb|AL939122.1|SCO939122 Streptomyces coelicolor A3(2) complete ... 44 0.37
12gb|AC121882.3| Mus musculus BAC clone RP24-135M19 from chromosom... 42 1.5
13ref|XM_464692.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.8
14ref|XM_464691.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.8
15ref|NM_193402.1| Oryza sativa (japonica cultivar-group), predic... 40 5.8
16gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 40 5.8
17gb|AF003739.2| Caenorhabditis elegans cosmid M01D7, complete seq... 40 5.8
18gb|AC121148.8| Mus musculus chromosome 3, clone RP24-369K4, comp... 40 5.8
19gb|AC108872.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.8
20gb|AC183830.2| Pan troglodytes BAC clone CH251-267I9 from chromo... 40 5.8
21gb|AC137751.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.8
22gb|AC087778.3| Pan troglodytes clone RP43-176J10, complete sequence 40 5.8
23gb|AE012485.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 5.8
24gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 40 5.8
25dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
26dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
27dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
28dbj|AP004258.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
29dbj|AP004225.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
30dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 5.8
31dbj|BA000013.4| Mesorhizobium loti MAFF303099 pMLa DNA, cpmplete... 40 5.8
32dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 5.8
33dbj|AP005170.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
34dbj|AP004785.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
35gb|AY830105.1| Phytophthora infestans gypsy-like retrotransposon... 40 5.8
36gb|AY830104.1| Phytophthora infestans gypsy-like retrotransposon... 40 5.8
37dbj|AP005797.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
38dbj|AK120193.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.8
39dbj|AK111379.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.8
40gb|AC005074.1|AC005074 Homo sapiens BAC clone CTA-208H19 from 7q... 40 5.8
41emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 40 5.8
42gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.8
43gb|AC154128.3| Tribolium castaneum BAC T.cast_C36A24 (Clemson U... 40 5.8 
>gb|U22450.1|HVU22450 Hordeum vulgare alpha-glucosidase mRNA, complete cds
          Length = 2738

 Score =  626 bits (316), Expect = e-176
 Identities = 329/332 (99%), Gaps = 1/332 (0%)
 Strand = Plus / Minus

                                                                        
Query: 79   ggctttaatttctcgcctttattcaatcaatgttatggtccatatcacaaattgcctaaa 138
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2736 ggctttaatttctcgcctttattcaatcaatgttatggtccatatcacaaattgcctaaa 2677

                                                                        
Query: 139  ttttaataggacatggcgaccttcagttcgaactcctccccgacgaccagcgacagcccg 198
            ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 2676 ttt-aataggacatggcgaccttcagttcgaactcctccccgacgaccagcgacagaccg 2618

                                                                        
Query: 199  ccgatgtgagcgacgccgccgagtcctcctgcgttctggtaccgtgtgccggctgacgag 258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2617 ccgatgtgagcgacgccgccgagtcctcctgcgttctggtaccgtgtgccggctgacgag 2558

                                                                        
Query: 259  ctcgcctccacctccgcgctgttgacgtggacggtgagcttcttcggcgccgccggcgac 318
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2557 ctcgcctccacctccgcgctgttgacgtggacggtgagcttcttcggcgccgccggcgac 2498

                                                                        
Query: 319  cggtgccccatgagcaccaccttgcttatcaccagtgtcctgctctgtgcgtacgagttg 378
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 2497 cggtgccccatgagcaccaccttgcttatgaccagtgtcctgctctgtgcgtacgagttg 2438

                                            
Query: 379  tgcaccacctccgacttcaccttgatggcccc 410
            ||||||||||||||||||||||||||||||||
Sbjct: 2437 tgcaccacctccgacttcaccttgatggcccc 2406
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>gb|AF118226.1|AF118226 Hordeum vulgare high pI alpha-glucosidase (AGL97) gene, complete cds
          Length = 7113

 Score =  573 bits (289), Expect = e-160
 Identities = 289/289 (100%)
 Strand = Plus / Minus

                                                                        
Query: 141  ttaataggacatggcgaccttcagttcgaactcctccccgacgaccagcgacagcccgcc 200
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7113 ttaataggacatggcgaccttcagttcgaactcctccccgacgaccagcgacagcccgcc 7054

                                                                        
Query: 201  gatgtgagcgacgccgccgagtcctcctgcgttctggtaccgtgtgccggctgacgagct 260
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7053 gatgtgagcgacgccgccgagtcctcctgcgttctggtaccgtgtgccggctgacgagct 6994

                                                                        
Query: 261  cgcctccacctccgcgctgttgacgtggacggtgagcttcttcggcgccgccggcgaccg 320
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6993 cgcctccacctccgcgctgttgacgtggacggtgagcttcttcggcgccgccggcgaccg 6934

                                                                        
Query: 321  gtgccccatgagcaccaccttgcttatcaccagtgtcctgctctgtgcgtacgagttgtg 380
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6933 gtgccccatgagcaccaccttgcttatcaccagtgtcctgctctgtgcgtacgagttgtg 6874

                                                             
Query: 381  caccacctccgacttcaccttgatggccccgtcgctccccatctcgcag 429
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6873 caccacctccgacttcaccttgatggccccgtcgctccccatctcgcag 6825
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 66/75 (88%)
 Strand = Plus / Minus

                                                                            
Query: 141      ttaataggacatggcgaccttcagttcgaactcctccccgacgaccagcgacagcccgcc 200
                |||||||| |||  ||||||| || |||||||||| ||||||||||||||||||||||||
Sbjct: 27722124 ttaataggtcataacgaccttgagatcgaactcctgcccgacgaccagcgacagcccgcc 27722065

                               
Query: 201      gatgtgagcgacgcc 215
                || ||| || |||||
Sbjct: 27722064 gacgtgcgccacgcc 27722050



 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 65/75 (86%)
 Strand = Plus / Plus

                                                                            
Query: 141      ttaataggacatggcgaccttcagttcgaactcctccccgacgaccagcgacagcccgcc 200
                |||||||| |||  ||||||| || |||||||||| |||||||||||||| |||||||| 
Sbjct: 27661916 ttaataggtcatcacgaccttgagatcgaactcctgcccgacgaccagcgtcagcccgct 27661975

                               
Query: 201      gatgtgagcgacgcc 215
                || ||| ||||||||
Sbjct: 27661976 gacgtgcgcgacgcc 27661990



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 70/83 (84%)
 Strand = Plus / Plus

                                                                            
Query: 304      ggcgccgccggcgaccggtgccccatgagcaccaccttgcttatcaccagtgtcctgctc 363
                |||| ||||| ||||||| |||||||||||||||||||||  ||  |||  |||| ||||
Sbjct: 27662082 ggcggcgccgccgaccggagccccatgagcaccaccttgccgatggccatcgtccggctc 27662141

                                       
Query: 364      tgtgcgtacgagttgtgcaccac 386
                 | |||||||||| |||||||||
Sbjct: 27662142 ggcgcgtacgagtcgtgcaccac 27662164



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 54/64 (84%)
 Strand = Plus / Minus

                                                                            
Query: 323      gccccatgagcaccaccttgcttatcaccagtgtcctgctctgtgcgtacgagttgtgca 382
                ||||||||||||||||||||   || ||||  |||| |||| | |||||||||| |||||
Sbjct: 27721936 gccccatgagcaccaccttggcgatgaccatcgtccggctcggcgcgtacgagtcgtgca 27721877

                    
Query: 383      ccac 386
                ||||
Sbjct: 27721876 ccac 27721873



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 254     acgagctcgcctccacctcc 273
               ||||||||||||||||||||
Sbjct: 6990902 acgagctcgcctccacctcc 6990921
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>dbj|AP004989.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:B1153E06
          Length = 174588

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 66/75 (88%)
 Strand = Plus / Minus

                                                                         
Query: 141   ttaataggacatggcgaccttcagttcgaactcctccccgacgaccagcgacagcccgcc 200
             |||||||| |||  ||||||| || |||||||||| ||||||||||||||||||||||||
Sbjct: 71379 ttaataggtcataacgaccttgagatcgaactcctgcccgacgaccagcgacagcccgcc 71320

                            
Query: 201   gatgtgagcgacgcc 215
             || ||| || |||||
Sbjct: 71319 gacgtgcgccacgcc 71305



 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 65/75 (86%)
 Strand = Plus / Plus

                                                                         
Query: 141   ttaataggacatggcgaccttcagttcgaactcctccccgacgaccagcgacagcccgcc 200
             |||||||| |||  ||||||| || |||||||||| |||||||||||||| |||||||| 
Sbjct: 11171 ttaataggtcatcacgaccttgagatcgaactcctgcccgacgaccagcgtcagcccgct 11230

                            
Query: 201   gatgtgagcgacgcc 215
             || ||| ||||||||
Sbjct: 11231 gacgtgcgcgacgcc 11245



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 70/83 (84%)
 Strand = Plus / Plus

                                                                         
Query: 304   ggcgccgccggcgaccggtgccccatgagcaccaccttgcttatcaccagtgtcctgctc 363
             |||| ||||| ||||||| |||||||||||||||||||||  ||  |||  |||| ||||
Sbjct: 11337 ggcggcgccgccgaccggagccccatgagcaccaccttgccgatggccatcgtccggctc 11396

                                    
Query: 364   tgtgcgtacgagttgtgcaccac 386
              | |||||||||| |||||||||
Sbjct: 11397 ggcgcgtacgagtcgtgcaccac 11419



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 54/64 (84%)
 Strand = Plus / Minus

                                                                         
Query: 323   gccccatgagcaccaccttgcttatcaccagtgtcctgctctgtgcgtacgagttgtgca 382
             ||||||||||||||||||||   || ||||  |||| |||| | |||||||||| |||||
Sbjct: 71191 gccccatgagcaccaccttggcgatgaccatcgtccggctcggcgcgtacgagtcgtgca 71132

                 
Query: 383   ccac 386
             ||||
Sbjct: 71131 ccac 71128
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>dbj|AP003728.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0710B08
          Length = 186991

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 66/75 (88%)
 Strand = Plus / Minus

                                                                         
Query: 141   ttaataggacatggcgaccttcagttcgaactcctccccgacgaccagcgacagcccgcc 200
             |||||||| |||  ||||||| || |||||||||| ||||||||||||||||||||||||
Sbjct: 24633 ttaataggtcataacgaccttgagatcgaactcctgcccgacgaccagcgacagcccgcc 24574

                            
Query: 201   gatgtgagcgacgcc 215
             || ||| || |||||
Sbjct: 24573 gacgtgcgccacgcc 24559



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 54/64 (84%)
 Strand = Plus / Minus

                                                                         
Query: 323   gccccatgagcaccaccttgcttatcaccagtgtcctgctctgtgcgtacgagttgtgca 382
             ||||||||||||||||||||   || ||||  |||| |||| | |||||||||| |||||
Sbjct: 24445 gccccatgagcaccaccttggcgatgaccatcgtccggctcggcgcgtacgagtcgtgca 24386

                 
Query: 383   ccac 386
             ||||
Sbjct: 24385 ccac 24382
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>dbj|AK121588.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033037N10, full
            insert sequence
          Length = 2804

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 66/75 (88%)
 Strand = Plus / Minus

                                                                        
Query: 141  ttaataggacatggcgaccttcagttcgaactcctccccgacgaccagcgacagcccgcc 200
            |||||||| |||  ||||||| || |||||||||| ||||||||||||||||||||||||
Sbjct: 2720 ttaataggtcataacgaccttgagatcgaactcctgcccgacgaccagcgacagcccgcc 2661

                           
Query: 201  gatgtgagcgacgcc 215
            || ||| || |||||
Sbjct: 2660 gacgtgcgccacgcc 2646



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 54/64 (84%)
 Strand = Plus / Minus

                                                                        
Query: 323  gccccatgagcaccaccttgcttatcaccagtgtcctgctctgtgcgtacgagttgtgca 382
            ||||||||||||||||||||   || ||||  |||| |||| | |||||||||| |||||
Sbjct: 2532 gccccatgagcaccaccttggcgatgaccatcgtccggctcggcgcgtacgagtcgtgca 2473

                
Query: 383  ccac 386
            ||||
Sbjct: 2472 ccac 2469
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>dbj|AK105449.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-125-B12, full
            insert sequence
          Length = 2873

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 66/75 (88%)
 Strand = Plus / Minus

                                                                        
Query: 141  ttaataggacatggcgaccttcagttcgaactcctccccgacgaccagcgacagcccgcc 200
            |||||||| |||  ||||||| || |||||||||| ||||||||||||||||||||||||
Sbjct: 2788 ttaataggtcataacgaccttgagatcgaactcctgcccgacgaccagcgacagcccgcc 2729

                           
Query: 201  gatgtgagcgacgcc 215
            || ||| || |||||
Sbjct: 2728 gacgtgcgccacgcc 2714



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 54/64 (84%)
 Strand = Plus / Minus

                                                                        
Query: 323  gccccatgagcaccaccttgcttatcaccagtgtcctgctctgtgcgtacgagttgtgca 382
            ||||||||||||||||||||   || ||||  |||| |||| | |||||||||| |||||
Sbjct: 2600 gccccatgagcaccaccttggcgatgaccatcgtccggctcggcgcgtacgagtcgtgca 2541

                
Query: 383  ccac 386
            ||||
Sbjct: 2540 ccac 2537
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>dbj|AK119824.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-177-D07, full
            insert sequence
          Length = 2829

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 65/75 (86%)
 Strand = Plus / Minus

                                                                        
Query: 141  ttaataggacatggcgaccttcagttcgaactcctccccgacgaccagcgacagcccgcc 200
            |||||||| |||  ||||||| || |||||||||| |||||||||||||| |||||||| 
Sbjct: 2739 ttaataggtcatcacgaccttgagatcgaactcctgcccgacgaccagcgtcagcccgct 2680

                           
Query: 201  gatgtgagcgacgcc 215
            || ||| ||||||||
Sbjct: 2679 gacgtgcgcgacgcc 2665



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 70/83 (84%)
 Strand = Plus / Minus

                                                                        
Query: 304  ggcgccgccggcgaccggtgccccatgagcaccaccttgcttatcaccagtgtcctgctc 363
            |||| ||||| ||||||| |||||||||||||||||||||  ||  |||  |||| ||||
Sbjct: 2573 ggcggcgccgccgaccggagccccatgagcaccaccttgccgatggccatcgtccggctc 2514

                                   
Query: 364  tgtgcgtacgagttgtgcaccac 386
             | |||||||||| |||||||||
Sbjct: 2513 ggcgcgtacgagtcgtgcaccac 2491
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>gb|AE004504.1| Pseudomonas aeruginosa PAO1, section 65 of 529 of the complete genome
          Length = 15542

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 303  cggcgccgccggcgaccggtgcc 325
            |||||||||||||||||||||||
Sbjct: 9351 cggcgccgccggcgaccggtgcc 9329
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>dbj|AP006653.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT05M24, TM0338,
             complete sequence
          Length = 94745

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 379   tgcaccacctccgacttcacctt 401
             |||||||||||||||||||||||
Sbjct: 19055 tgcaccacctccgacttcacctt 19077
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>emb|AL939122.1|SCO939122 Streptomyces coelicolor A3(2) complete genome; segment 19/29
          Length = 311000

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 269   cctccgcgctgttgacgtggacggtg 294
             |||||||||||||| |||||||||||
Sbjct: 76865 cctccgcgctgttggcgtggacggtg 76840
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>gb|AC121882.3| Mus musculus BAC clone RP24-135M19 from chromosome 1, complete sequence
          Length = 173376

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 347    tcaccagtgtcctgctctgtg 367
              |||||||||||||||||||||
Sbjct: 124572 tcaccagtgtcctgctctgtg 124552
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>ref|XM_464692.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 990

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 303 cggcgccgccggcgaccggtgccccatg 330
           |||||||||||| |||||| ||||||||
Sbjct: 489 cggcgccgccggggaccggggccccatg 462
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>ref|XM_464691.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2595

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 303 cggcgccgccggcgaccggtgccccatg 330
           |||||||||||| |||||| ||||||||
Sbjct: 384 cggcgccgccggggaccggggccccatg 411
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>ref|NM_193402.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2886

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 261  cgcctccacctccgcgctgt 280
            ||||||||||||||||||||
Sbjct: 1584 cgcctccacctccgcgctgt 1565
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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 298    ttcttcggcgccgccggcga 317
              ||||||||||||||||||||
Sbjct: 482150 ttcttcggcgccgccggcga 482169
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>gb|AF003739.2| Caenorhabditis elegans cosmid M01D7, complete sequence
          Length = 41179

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 125   acaaattgcctaaattttaa 144
             ||||||||||||||||||||
Sbjct: 23822 acaaattgcctaaattttaa 23841
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>gb|AC121148.8| Mus musculus chromosome 3, clone RP24-369K4, complete sequence
          Length = 209365

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 126    caaattgcctaaattttaat 145
              ||||||||||||||||||||
Sbjct: 125400 caaattgcctaaattttaat 125381
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>gb|AC108872.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBb0079P23, complete sequence
          Length = 125090

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 306   cgccgccggcgaccggtgcc 325
             ||||||||||||||||||||
Sbjct: 37939 cgccgccggcgaccggtgcc 37920
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>gb|AC183830.2| Pan troglodytes BAC clone CH251-267I9 from chromosome 7, complete
             sequence
          Length = 157720

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 391   gacttcaccttgatggcccc 410
             ||||||||||||||||||||
Sbjct: 30477 gacttcaccttgatggcccc 30458
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>gb|AC137751.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0014E11,
              complete sequence
          Length = 199348

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 306    cgccgccggcgaccggtgcc 325
              ||||||||||||||||||||
Sbjct: 186156 cgccgccggcgaccggtgcc 186137
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>gb|AC087778.3| Pan troglodytes clone RP43-176J10, complete sequence
          Length = 63176

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 391   gacttcaccttgatggcccc 410
             ||||||||||||||||||||
Sbjct: 29544 gacttcaccttgatggcccc 29563
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>gb|AE012485.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 393
            of 460 of the complete genome
          Length = 12189

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 185  ccagcgacagcccgccgatg 204
            ||||||||||||||||||||
Sbjct: 1836 ccagcgacagcccgccgatg 1855
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 185     ccagcgacagcccgccgatg 204
               ||||||||||||||||||||
Sbjct: 4397098 ccagcgacagcccgccgatg 4397117
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 306      cgccgccggcgaccggtgcc 325
                ||||||||||||||||||||
Sbjct: 25099475 cgccgccggcgaccggtgcc 25099456



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 306      cgccgccggcgaccggtgcc 325
                ||||||||||||||||||||
Sbjct: 25057108 cgccgccggcgaccggtgcc 25057089
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 303     cggcgccgccggcgaccggtgccccatg 330
               |||||||||||| |||||| ||||||||
Sbjct: 6731971 cggcgccgccggggaccggggccccatg 6731944
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 261      cgcctccacctccgcgctgt 280
                ||||||||||||||||||||
Sbjct: 20626197 cgcctccacctccgcgctgt 20626178
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>dbj|AP004258.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0024F24
          Length = 172642

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 261   cgcctccacctccgcgctgt 280
             ||||||||||||||||||||
Sbjct: 88173 cgcctccacctccgcgctgt 88154
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>dbj|AP004225.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1156H12
          Length = 159509

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 261    cgcctccacctccgcgctgt 280
              ||||||||||||||||||||
Sbjct: 150019 cgcctccacctccgcgctgt 150000
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 200     cgatgtgagcgacgccgccg 219
               ||||||||||||||||||||
Sbjct: 6175848 cgatgtgagcgacgccgccg 6175867
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>dbj|BA000013.4| Mesorhizobium loti MAFF303099 pMLa DNA, cpmplete genome
          Length = 351911

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 305    gcgccgccggcgaccggtgc 324
              ||||||||||||||||||||
Sbjct: 240810 gcgccgccggcgaccggtgc 240829
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 303     cggcgccgccggcgaccggt 322
               ||||||||||||||||||||
Sbjct: 2763090 cggcgccgccggcgaccggt 2763071
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>dbj|AP005170.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0080E19
          Length = 152755

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 254   acgagctcgcctccacctcc 273
             ||||||||||||||||||||
Sbjct: 11689 acgagctcgcctccacctcc 11708
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>dbj|AP004785.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBb0061B07
          Length = 124766

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 254   acgagctcgcctccacctcc 273
             ||||||||||||||||||||
Sbjct: 50329 acgagctcgcctccacctcc 50348
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>gb|AY830105.1| Phytophthora infestans gypsy-like retrotransposon GypsyPi-3b,
            complete sequence
          Length = 7348

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 181  acgaccagcgacagcccgccgatg 204
            ||||||||||| ||||||||||||
Sbjct: 2393 acgaccagcgatagcccgccgatg 2416
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>gb|AY830104.1| Phytophthora infestans gypsy-like retrotransposon GypsyPi-3a,
            complete sequence
          Length = 8977

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 181  acgaccagcgacagcccgccgatg 204
            ||||||||||| ||||||||||||
Sbjct: 3118 acgaccagcgatagcccgccgatg 3141
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>dbj|AP005797.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:B1131G07
          Length = 133992

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 303   cggcgccgccggcgaccggtgccccatg 330
             |||||||||||| |||||| ||||||||
Sbjct: 53024 cggcgccgccggggaccggggccccatg 52997
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>dbj|AK120193.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013035P19, full
           insert sequence
          Length = 2499

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 254 acgagctcgcctccacctcc 273
           ||||||||||||||||||||
Sbjct: 52  acgagctcgcctccacctcc 71
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>dbj|AK111379.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-182-B05, full
           insert sequence
          Length = 990

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 303 cggcgccgccggcgaccggtgccccatg 330
           |||||||||||| |||||| ||||||||
Sbjct: 489 cggcgccgccggggaccggggccccatg 462
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>gb|AC005074.1|AC005074 Homo sapiens BAC clone CTA-208H19 from 7q11.23, complete sequence
          Length = 50604

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 391   gacttcaccttgatggcccc 410
             ||||||||||||||||||||
Sbjct: 39322 gacttcaccttgatggcccc 39303
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 296    gcttcttcggcgccgccggcgacc 319
              ||||||||| ||||||||||||||
Sbjct: 523964 gcttcttcgccgccgccggcgacc 523987
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 306      cgccgccggcgaccggtgcc 325
                ||||||||||||||||||||
Sbjct: 25410494 cgccgccggcgaccggtgcc 25410475



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 306      cgccgccggcgaccggtgcc 325
                ||||||||||||||||||||
Sbjct: 25368698 cgccgccggcgaccggtgcc 25368679
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>gb|AC154128.3| Tribolium castaneum  BAC T.cast_C36A24 (Clemson University Genomics
             Institute Tribolium castaneum BAC Library (Red Flour
             Beetle)) complete sequence
          Length = 154107

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 18    ttattcatgaactagctaaacaat 41
             |||||||| |||||||||||||||
Sbjct: 90027 ttattcataaactagctaaacaat 90050


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,666,660
Number of Sequences: 3902068
Number of extensions: 3666660
Number of successful extensions: 71106
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70334
Number of HSP's gapped (non-prelim): 771
length of query: 429
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 407
effective length of database: 17,147,199,772
effective search space: 6978910307204
effective search space used: 6978910307204
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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