ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl30b09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LTBP2_MOUSE (O08999) Latent transforming growth factor beta-bind... 27 8.9
2LTBP2_HUMAN (Q14767) Latent transforming growth factor beta-bind... 27 8.9

>LTBP2_MOUSE (O08999) Latent transforming growth factor beta-binding protein 2|
            precursor (LTBP-2)
          Length = 1813

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 16/54 (29%), Positives = 22/54 (40%)
 Frame = -1

Query: 261  CLPSFFPSFCLCGPPFVSAVQKASRARNWSSVLAYE*CTQDYFPLLSRGHKCSC 100
            CL S    FCLC P F SA +  +R ++     A + C   +         C C
Sbjct: 1183 CLNSLGSFFCLCAPGFASA-EGGTRCQDVDECAATDPCPGGHCVNTEGSFSCLC 1235



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>LTBP2_HUMAN (Q14767) Latent transforming growth factor beta-binding protein 2|
            precursor (LTBP-2)
          Length = 1821

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = -1

Query: 261  CLPSFFPSFCLCGPPFVSA 205
            CL S    FCLC P FVSA
Sbjct: 1192 CLNSHGSFFCLCAPGFVSA 1210


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,677,500
Number of Sequences: 219361
Number of extensions: 733105
Number of successful extensions: 1260
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1260
length of database: 80,573,946
effective HSP length: 111
effective length of database: 56,224,875
effective search space used: 1349397000
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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