ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl30b06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UNC93_CAEEL (Q93380) Putative potassium channel regulatory prote... 31 0.62
2DDX11_HUMAN (Q96FC9) Probable ATP-dependent RNA helicase DDX11 (... 30 1.8
3Y2318_SYNP7 (P37372) Hypothetical protein Synpcc7942_2318 (ORF 2) 29 3.1
4YR7H_ECOLI (P21322) Hypothetical 11.6 kDa protein (ORFH) (Retron... 28 4.0
5SC5A3_CANFA (P31637) Sodium/myo-inositol cotransporter (Na(+)/my... 28 4.0
6SC5A3_BOVIN (P53793) Sodium/myo-inositol cotransporter (Na(+)/my... 28 4.0
7SC5A2_RABIT (P26430) Sodium/nucleoside cotransporter (Na(+)/nucl... 28 5.2
8LAP1_CAEEL (O61967) Protein lap1 (Protein lethal-413) 28 5.2
9MAMC2_MOUSE (Q8CG85) MAM domain-containing protein 2 precursor 28 5.2
10PIVA2_ADECT (P87552) Maturation protein (Protein IVA2) 28 6.8
11SYR_AQUAE (O67068) Arginyl-tRNA synthetase (EC 6.1.1.19) (Argini... 28 6.8
12PIP25_ARATH (Q9SV31) Probable aquaporin PIP2.5 (Plasma membrane ... 28 6.8
13DYHG_CHLRE (Q39575) Dynein gamma chain, flagellar outer arm 28 6.8
14SC5A3_HUMAN (P53794) Sodium/myo-inositol cotransporter (Na(+)/my... 27 8.9
15SC5A2_HUMAN (P31639) Sodium/glucose cotransporter 2 (Na(+)/gluco... 27 8.9
16SC5A2_RAT (P53792) Sodium/glucose cotransporter 2 (Na(+)/glucose... 27 8.9
17SC5A2_MOUSE (Q923I7) Sodium/glucose cotransporter 2 (Na(+)/gluco... 27 8.9

>UNC93_CAEEL (Q93380) Putative potassium channel regulatory protein unc-93|
           (Uncoordinated protein 93)
          Length = 705

 Score = 31.2 bits (69), Expect = 0.62
 Identities = 26/92 (28%), Positives = 42/92 (45%)
 Frame = -2

Query: 293 RKCLQSLWFLNLMLKSVHVHPLATMFGLLTTVDQVVINCTLWEAQVCTGYLCTGVPLLYI 114
           RK + +LW L     SV    L T F  L  + Q  +N  L    +   YL   +  L++
Sbjct: 244 RKIMSNLWIL-----SVAFLFLFTAFNGLQNL-QTSVNGDLGSDSLVALYLSLAISSLFV 297

Query: 113 PFFSSYFAKRVNFRWTLGVHIYIYQTGVLINL 18
           P   S+   R+  + T  + I++Y   ++INL
Sbjct: 298 P---SFMINRLGCKLTFLIAIFVYFLYIVINL 326



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>DDX11_HUMAN (Q96FC9) Probable ATP-dependent RNA helicase DDX11 (EC 3.6.1.-)|
           (DEAD/H box protein 11) (CHL1 homolog) (Keratinocyte
           growth factor-regulated gene 2 protein) (KRG-2)
          Length = 970

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = +3

Query: 234 VDMHRFEHEIQKPQTLQTFSGRRQLKSLGCVFTQHVTKKMGLL 362
           VDM R  HE +K    +    RRQ K   C F  H  ++MGLL
Sbjct: 286 VDMQRSRHEKKKGAEEEKPKRRRQEKQAACPFYNH--EQMGLL 326



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>Y2318_SYNP7 (P37372) Hypothetical protein Synpcc7942_2318 (ORF 2)|
          Length = 208

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -2

Query: 149 GYLCTGVPLLYIPFFSSYFAKRVNFRWTLGVHIYIYQTGVLINL 18
           GY  T +P  + P+FS    K  +++  L V + +Y T +L+NL
Sbjct: 91  GYSKTVLPQGFAPWFSQLLHKPPSWKMALTVLLALYPTVLLLNL 134



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>YR7H_ECOLI (P21322) Hypothetical 11.6 kDa protein (ORFH) (Retron EC67)|
          Length = 104

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +3

Query: 102 RKKRNIQQWHSGTQVSCTDLSFPKSTVYYHLIDCSK*PKHCS*RVDMHRF 251
           R  +N+  W  G Q   T L +PK  +  + I  SK     S +VD H F
Sbjct: 31  RLHQNVDVWKLGNQTWSTPLMYPKMELVEYNIAISKCINGKSSKVDHHLF 80



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>SC5A3_CANFA (P31637) Sodium/myo-inositol cotransporter (Na(+)/myo-inositol|
           cotransporter)
          Length = 718

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 316 NDFSCLRPENVCKVCGF*ISCSN 248
           +D +C+ PE+  +VCG    CSN
Sbjct: 326 DDIACINPEHCMQVCGSRAGCSN 348



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>SC5A3_BOVIN (P53793) Sodium/myo-inositol cotransporter (Na(+)/myo-inositol|
           cotransporter)
          Length = 718

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 316 NDFSCLRPENVCKVCGF*ISCSN 248
           +D +C+ PE+  +VCG    CSN
Sbjct: 326 DDIACINPEHCMQVCGSRAGCSN 348



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>SC5A2_RABIT (P26430) Sodium/nucleoside cotransporter (Na(+)/nucleoside|
           cotransporter)
          Length = 672

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 319 PNDFSCLRPENVCKVCGF*ISCSN 248
           P++ +C+ PE   +VCG  + CSN
Sbjct: 340 PDEVACVAPEVCKRVCGTEVGCSN 363



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>LAP1_CAEEL (O61967) Protein lap1 (Protein lethal-413)|
          Length = 699

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 207 K*PKHCS*RVDMHRFEHEIQKPQTLQTFSGRR 302
           K PKH    +D H   HEI +P+ L   S  R
Sbjct: 479 KTPKHKKGSIDGHMLPHEIDQPRQLSLVSNHR 510



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>MAMC2_MOUSE (Q8CG85) MAM domain-containing protein 2 precursor|
          Length = 686

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
 Frame = +3

Query: 90  CKITRKKRNIQQWHSGTQVSCTDLSFPK-----STVYYHLIDCS 206
           C  T++KRN   WH G   + T  + PK        YY  I+ S
Sbjct: 516 CAFTQEKRNRSSWHRGRGETPTSYTGPKGDHTTGVGYYMYIEAS 559



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>PIVA2_ADECT (P87552) Maturation protein (Protein IVA2)|
          Length = 446

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 1/74 (1%)
 Frame = -2

Query: 287 CLQSLWFLNLMLKSVHVHPLATMFGLLTTVDQVVIN-CTLWEAQVCTGYLCTGVPLLYIP 111
           C +S    NLM   + V    T+F +   VD +       WE Q+C G    G     +P
Sbjct: 174 CGKSQLLRNLMSAQLIVPAPETVFFITPQVDMIPPQEIAAWETQICEGNFLAGPENTVVP 233

Query: 110 FFSSYFAKRVNFRW 69
              S   K V   +
Sbjct: 234 QSGSIMPKFVQMSY 247



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>SYR_AQUAE (O67068) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA|
           ligase) (ArgRS)
          Length = 583

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 231 FSYNVWVTYYSRSGGNKLYSLGSSGLYRIL 142
           F+Y+V   YY    G ++Y LG S  YR L
Sbjct: 148 FNYDVTREYYINDAGRQVYLLGISIYYRYL 177



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>PIP25_ARATH (Q9SV31) Probable aquaporin PIP2.5 (Plasma membrane intrinsic|
           protein 2d) (PIP2d)
          Length = 286

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = -2

Query: 242 HVHPLATMFGLLTTVDQVVINCTLWEAQVCTGYLCTGVPLLYIPFFSSYFAK 87
           H++P  T FGLL      ++   ++    C G +C GV L+   F S+YF +
Sbjct: 104 HINPAVT-FGLLLARKVTLVRAVMYMVAQCLGAIC-GVALVK-AFQSAYFTR 152



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>DYHG_CHLRE (Q39575) Dynein gamma chain, flagellar outer arm|
          Length = 4485

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/36 (33%), Positives = 24/36 (66%)
 Frame = +3

Query: 42   ININMYSECPPKIHTLCKITRKKRNIQQWHSGTQVS 149
            IN+++ S C  +++ +C+ TR+++   Q+  GT VS
Sbjct: 1876 INLDVLSVCAQQVYCICR-TRERKKSFQFTDGTTVS 1910



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>SC5A3_HUMAN (P53794) Sodium/myo-inositol cotransporter (Na(+)/myo-inositol|
           cotransporter)
          Length = 718

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 316 NDFSCLRPENVCKVCGF*ISCSN 248
           +D +C+ PE+   VCG    CSN
Sbjct: 326 DDIACINPEHCMLVCGSRAGCSN 348



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>SC5A2_HUMAN (P31639) Sodium/glucose cotransporter 2 (Na(+)/glucose|
           cotransporter 2) (Low affinity sodium-glucose
           cotransporter)
          Length = 672

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 319 PNDFSCLRPENVCKVCGF*ISCSN 248
           P++ +C+ PE   +VCG  + CSN
Sbjct: 340 PDEVACVVPEVCRRVCGTEVGCSN 363



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>SC5A2_RAT (P53792) Sodium/glucose cotransporter 2 (Na(+)/glucose|
           cotransporter 2) (Low affinity sodium-glucose
           cotransporter)
          Length = 670

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 319 PNDFSCLRPENVCKVCGF*ISCSN 248
           P++ +C+ PE   +VCG  + CSN
Sbjct: 338 PDEVACVVPEVCKRVCGTEVGCSN 361



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>SC5A2_MOUSE (Q923I7) Sodium/glucose cotransporter 2 (Na(+)/glucose|
           cotransporter 2) (Low affinity sodium-glucose
           cotransporter)
          Length = 670

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 319 PNDFSCLRPENVCKVCGF*ISCSN 248
           P++ +C+ PE   +VCG  + CSN
Sbjct: 338 PDEVACVVPEVCKRVCGTEVGCSN 361


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,831,889
Number of Sequences: 219361
Number of extensions: 1264587
Number of successful extensions: 2865
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2864
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 1359926328
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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