Clone Name | rbastl30b06 |
---|---|
Clone Library Name | barley_pub |
>UNC93_CAEEL (Q93380) Putative potassium channel regulatory protein unc-93| (Uncoordinated protein 93) Length = 705 Score = 31.2 bits (69), Expect = 0.62 Identities = 26/92 (28%), Positives = 42/92 (45%) Frame = -2 Query: 293 RKCLQSLWFLNLMLKSVHVHPLATMFGLLTTVDQVVINCTLWEAQVCTGYLCTGVPLLYI 114 RK + +LW L SV L T F L + Q +N L + YL + L++ Sbjct: 244 RKIMSNLWIL-----SVAFLFLFTAFNGLQNL-QTSVNGDLGSDSLVALYLSLAISSLFV 297 Query: 113 PFFSSYFAKRVNFRWTLGVHIYIYQTGVLINL 18 P S+ R+ + T + I++Y ++INL Sbjct: 298 P---SFMINRLGCKLTFLIAIFVYFLYIVINL 326
>DDX11_HUMAN (Q96FC9) Probable ATP-dependent RNA helicase DDX11 (EC 3.6.1.-)| (DEAD/H box protein 11) (CHL1 homolog) (Keratinocyte growth factor-regulated gene 2 protein) (KRG-2) Length = 970 Score = 29.6 bits (65), Expect = 1.8 Identities = 18/43 (41%), Positives = 22/43 (51%) Frame = +3 Query: 234 VDMHRFEHEIQKPQTLQTFSGRRQLKSLGCVFTQHVTKKMGLL 362 VDM R HE +K + RRQ K C F H ++MGLL Sbjct: 286 VDMQRSRHEKKKGAEEEKPKRRRQEKQAACPFYNH--EQMGLL 326
>Y2318_SYNP7 (P37372) Hypothetical protein Synpcc7942_2318 (ORF 2)| Length = 208 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/44 (34%), Positives = 25/44 (56%) Frame = -2 Query: 149 GYLCTGVPLLYIPFFSSYFAKRVNFRWTLGVHIYIYQTGVLINL 18 GY T +P + P+FS K +++ L V + +Y T +L+NL Sbjct: 91 GYSKTVLPQGFAPWFSQLLHKPPSWKMALTVLLALYPTVLLLNL 134
>YR7H_ECOLI (P21322) Hypothetical 11.6 kDa protein (ORFH) (Retron EC67)| Length = 104 Score = 28.5 bits (62), Expect = 4.0 Identities = 17/50 (34%), Positives = 23/50 (46%) Frame = +3 Query: 102 RKKRNIQQWHSGTQVSCTDLSFPKSTVYYHLIDCSK*PKHCS*RVDMHRF 251 R +N+ W G Q T L +PK + + I SK S +VD H F Sbjct: 31 RLHQNVDVWKLGNQTWSTPLMYPKMELVEYNIAISKCINGKSSKVDHHLF 80
>SC5A3_CANFA (P31637) Sodium/myo-inositol cotransporter (Na(+)/myo-inositol| cotransporter) Length = 718 Score = 28.5 bits (62), Expect = 4.0 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = -3 Query: 316 NDFSCLRPENVCKVCGF*ISCSN 248 +D +C+ PE+ +VCG CSN Sbjct: 326 DDIACINPEHCMQVCGSRAGCSN 348
>SC5A3_BOVIN (P53793) Sodium/myo-inositol cotransporter (Na(+)/myo-inositol| cotransporter) Length = 718 Score = 28.5 bits (62), Expect = 4.0 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = -3 Query: 316 NDFSCLRPENVCKVCGF*ISCSN 248 +D +C+ PE+ +VCG CSN Sbjct: 326 DDIACINPEHCMQVCGSRAGCSN 348
>SC5A2_RABIT (P26430) Sodium/nucleoside cotransporter (Na(+)/nucleoside| cotransporter) Length = 672 Score = 28.1 bits (61), Expect = 5.2 Identities = 10/24 (41%), Positives = 16/24 (66%) Frame = -3 Query: 319 PNDFSCLRPENVCKVCGF*ISCSN 248 P++ +C+ PE +VCG + CSN Sbjct: 340 PDEVACVAPEVCKRVCGTEVGCSN 363
>LAP1_CAEEL (O61967) Protein lap1 (Protein lethal-413)| Length = 699 Score = 28.1 bits (61), Expect = 5.2 Identities = 13/32 (40%), Positives = 16/32 (50%) Frame = +3 Query: 207 K*PKHCS*RVDMHRFEHEIQKPQTLQTFSGRR 302 K PKH +D H HEI +P+ L S R Sbjct: 479 KTPKHKKGSIDGHMLPHEIDQPRQLSLVSNHR 510
>MAMC2_MOUSE (Q8CG85) MAM domain-containing protein 2 precursor| Length = 686 Score = 28.1 bits (61), Expect = 5.2 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 5/44 (11%) Frame = +3 Query: 90 CKITRKKRNIQQWHSGTQVSCTDLSFPK-----STVYYHLIDCS 206 C T++KRN WH G + T + PK YY I+ S Sbjct: 516 CAFTQEKRNRSSWHRGRGETPTSYTGPKGDHTTGVGYYMYIEAS 559
>PIVA2_ADECT (P87552) Maturation protein (Protein IVA2)| Length = 446 Score = 27.7 bits (60), Expect = 6.8 Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 1/74 (1%) Frame = -2 Query: 287 CLQSLWFLNLMLKSVHVHPLATMFGLLTTVDQVVIN-CTLWEAQVCTGYLCTGVPLLYIP 111 C +S NLM + V T+F + VD + WE Q+C G G +P Sbjct: 174 CGKSQLLRNLMSAQLIVPAPETVFFITPQVDMIPPQEIAAWETQICEGNFLAGPENTVVP 233 Query: 110 FFSSYFAKRVNFRW 69 S K V + Sbjct: 234 QSGSIMPKFVQMSY 247
>SYR_AQUAE (O67068) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA| ligase) (ArgRS) Length = 583 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = -1 Query: 231 FSYNVWVTYYSRSGGNKLYSLGSSGLYRIL 142 F+Y+V YY G ++Y LG S YR L Sbjct: 148 FNYDVTREYYINDAGRQVYLLGISIYYRYL 177
>PIP25_ARATH (Q9SV31) Probable aquaporin PIP2.5 (Plasma membrane intrinsic| protein 2d) (PIP2d) Length = 286 Score = 27.7 bits (60), Expect = 6.8 Identities = 17/52 (32%), Positives = 27/52 (51%) Frame = -2 Query: 242 HVHPLATMFGLLTTVDQVVINCTLWEAQVCTGYLCTGVPLLYIPFFSSYFAK 87 H++P T FGLL ++ ++ C G +C GV L+ F S+YF + Sbjct: 104 HINPAVT-FGLLLARKVTLVRAVMYMVAQCLGAIC-GVALVK-AFQSAYFTR 152
>DYHG_CHLRE (Q39575) Dynein gamma chain, flagellar outer arm| Length = 4485 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/36 (33%), Positives = 24/36 (66%) Frame = +3 Query: 42 ININMYSECPPKIHTLCKITRKKRNIQQWHSGTQVS 149 IN+++ S C +++ +C+ TR+++ Q+ GT VS Sbjct: 1876 INLDVLSVCAQQVYCICR-TRERKKSFQFTDGTTVS 1910
>SC5A3_HUMAN (P53794) Sodium/myo-inositol cotransporter (Na(+)/myo-inositol| cotransporter) Length = 718 Score = 27.3 bits (59), Expect = 8.9 Identities = 10/23 (43%), Positives = 14/23 (60%) Frame = -3 Query: 316 NDFSCLRPENVCKVCGF*ISCSN 248 +D +C+ PE+ VCG CSN Sbjct: 326 DDIACINPEHCMLVCGSRAGCSN 348
>SC5A2_HUMAN (P31639) Sodium/glucose cotransporter 2 (Na(+)/glucose| cotransporter 2) (Low affinity sodium-glucose cotransporter) Length = 672 Score = 27.3 bits (59), Expect = 8.9 Identities = 10/24 (41%), Positives = 16/24 (66%) Frame = -3 Query: 319 PNDFSCLRPENVCKVCGF*ISCSN 248 P++ +C+ PE +VCG + CSN Sbjct: 340 PDEVACVVPEVCRRVCGTEVGCSN 363
>SC5A2_RAT (P53792) Sodium/glucose cotransporter 2 (Na(+)/glucose| cotransporter 2) (Low affinity sodium-glucose cotransporter) Length = 670 Score = 27.3 bits (59), Expect = 8.9 Identities = 10/24 (41%), Positives = 16/24 (66%) Frame = -3 Query: 319 PNDFSCLRPENVCKVCGF*ISCSN 248 P++ +C+ PE +VCG + CSN Sbjct: 338 PDEVACVVPEVCKRVCGTEVGCSN 361
>SC5A2_MOUSE (Q923I7) Sodium/glucose cotransporter 2 (Na(+)/glucose| cotransporter 2) (Low affinity sodium-glucose cotransporter) Length = 670 Score = 27.3 bits (59), Expect = 8.9 Identities = 10/24 (41%), Positives = 16/24 (66%) Frame = -3 Query: 319 PNDFSCLRPENVCKVCGF*ISCSN 248 P++ +C+ PE +VCG + CSN Sbjct: 338 PDEVACVVPEVCKRVCGTEVGCSN 361 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,831,889 Number of Sequences: 219361 Number of extensions: 1264587 Number of successful extensions: 2865 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 2801 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2864 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 1359926328 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)