ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl30b04 |
|---|---|
| Clone Library Name | barley_pub |
>CESA7_ARATH (Q9SWW6) Cellulose synthase A catalytic subunit 7 [UDP-forming] (EC| 2.4.1.12) (AtCesA-7) (Irregular xylem protein 3) (AtIRX3) Length = 1026 Score = 73.6 bits (179), Expect = 2e-13 Identities = 33/50 (66%), Positives = 41/50 (82%) Frame = -2 Query: 453 LMGKQNRTPTIVIVWSILLASIFSLLWVKIDSFISDTQKAVAMGQCGVNC 304 LMG+QNRTPTIV++WS+LLASIFSLLWV+ID F+ T K +CG+NC Sbjct: 978 LMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVLKT-KGPDTSKCGINC 1026
>CESA4_ARATH (Q84JA6) Cellulose synthase A catalytic subunit 4 [UDP-forming] (EC| 2.4.1.12) (AtCesA-4) (Irregular xylem protein 5) (AtIRX5) Length = 1049 Score = 70.5 bits (171), Expect = 2e-12 Identities = 33/50 (66%), Positives = 41/50 (82%) Frame = -2 Query: 453 LMGKQNRTPTIVIVWSILLASIFSLLWVKIDSFISDTQKAVAMGQCGVNC 304 LMG+QNRTPTIV++WSILLASIFSL+WV+ID F+ Q + QCGV+C Sbjct: 1001 LMGRQNRTPTIVVLWSILLASIFSLVWVRIDPFL-PKQTGPLLKQCGVDC 1049
>CESA3_ARATH (Q941L0) Cellulose synthase A catalytic subunit 3 [UDP-forming] (EC| 2.4.1.12) (AtCesA-3) (Constitutive expression of VSP1 protein 1) (Isoxaben resistant protein 1) (Ath-B) Length = 1065 Score = 70.5 bits (171), Expect = 2e-12 Identities = 33/50 (66%), Positives = 40/50 (80%) Frame = -2 Query: 453 LMGKQNRTPTIVIVWSILLASIFSLLWVKIDSFISDTQKAVAMGQCGVNC 304 LMG+QNRTPTIV+VWS+LLASIFSLLWV+ID F S + +CG+NC Sbjct: 1017 LMGRQNRTPTIVVVWSVLLASIFSLLWVRIDPFTSRVTGPDIL-ECGINC 1065
>CESA8_ARATH (Q8LPK5) Cellulose synthase A catalytic subunit 8 [UDP-forming] (EC| 2.4.1.12) (AtCesA-8) (Irregular xylem protein 1) (AtIRX1) Length = 985 Score = 63.9 bits (154), Expect = 2e-10 Identities = 28/37 (75%), Positives = 35/37 (94%) Frame = -2 Query: 453 LMGKQNRTPTIVIVWSILLASIFSLLWVKIDSFISDT 343 LMG+QNRTPTIVI+WSILLAS+FSL+WV+I+ F+S T Sbjct: 935 LMGRQNRTPTIVILWSILLASVFSLVWVRINPFVSKT 971
>CESAA_ARATH (Q9SKJ5) Probable cellulose synthase A catalytic subunit 10| [UDP-forming] (EC 2.4.1.12) (AtCesA-10) (AtCesA-13) Length = 1065 Score = 63.5 bits (153), Expect = 2e-10 Identities = 29/37 (78%), Positives = 34/37 (91%) Frame = -2 Query: 453 LMGKQNRTPTIVIVWSILLASIFSLLWVKIDSFISDT 343 L+G+QNRTPTIVIVWS LLASIFSLLWV+I+ F+S T Sbjct: 1019 LLGRQNRTPTIVIVWSALLASIFSLLWVRINPFVSTT 1055
>CESA1_ARATH (O48946) Cellulose synthase A catalytic subunit 1 [UDP-forming] (EC| 2.4.1.12) (AtCesA-1) (Radially swollen protein 1) (AtRSW1) Length = 1081 Score = 62.4 bits (150), Expect = 5e-10 Identities = 28/40 (70%), Positives = 34/40 (85%) Frame = -2 Query: 453 LMGKQNRTPTIVIVWSILLASIFSLLWVKIDSFISDTQKA 334 L+G+QNRTPTIVIVWS+LLASIFSLLWV+I+ F+ A Sbjct: 1032 LLGRQNRTPTIVIVWSVLLASIFSLLWVRINPFVDANPNA 1071
>CESA9_ARATH (Q9SJ22) Probable cellulose synthase A catalytic subunit 9| [UDP-forming] (EC 2.4.1.12) (AtCesA-9) Length = 1088 Score = 59.7 bits (143), Expect = 3e-09 Identities = 26/50 (52%), Positives = 39/50 (78%) Frame = -2 Query: 453 LMGKQNRTPTIVIVWSILLASIFSLLWVKIDSFISDTQKAVAMGQCGVNC 304 L+GKQ+R PTI++VWSILLASI +LLWV+++ F+S + + CG++C Sbjct: 1039 LLGKQDRVPTIILVWSILLASILTLLWVRVNPFVSKDGPVLEI--CGLDC 1086
>CESA2_ARATH (O48947) Cellulose synthase A catalytic subunit 2 [UDP-forming] (EC| 2.4.1.12) (AtCesA-2) (Ath-A) Length = 1084 Score = 58.2 bits (139), Expect = 1e-08 Identities = 24/50 (48%), Positives = 39/50 (78%) Frame = -2 Query: 453 LMGKQNRTPTIVIVWSILLASIFSLLWVKIDSFISDTQKAVAMGQCGVNC 304 ++GKQ++ PTI++VWSILLASI +LLWV+++ F++ + + CG+NC Sbjct: 1035 MLGKQDKMPTIIVVWSILLASILTLLWVRVNPFVAKGGPVLEI--CGLNC 1082
>CESA6_ARATH (Q94JQ6) Cellulose synthase A catalytic subunit 6 [UDP-forming] (EC| 2.4.1.12) (AtCesA-6) (Isoxaben resistant protein 2) (Protein PROCUSTE1) (Protein Quill) (AraxCelA) Length = 1084 Score = 57.8 bits (138), Expect = 1e-08 Identities = 25/50 (50%), Positives = 39/50 (78%) Frame = -2 Query: 453 LMGKQNRTPTIVIVWSILLASIFSLLWVKIDSFISDTQKAVAMGQCGVNC 304 L+GKQ+R PTI++VWSILLASI +LLWV+++ F++ + + CG++C Sbjct: 1036 LLGKQDRMPTIIVVWSILLASILTLLWVRVNPFVAKGGPILEI--CGLDC 1083
>CESA5_ARATH (Q8L778) Cellulose synthase A catalytic subunit 5 [UDP-forming] (EC| 2.4.1.12) (AtCesA-5) Length = 1069 Score = 57.4 bits (137), Expect = 2e-08 Identities = 25/50 (50%), Positives = 39/50 (78%) Frame = -2 Query: 453 LMGKQNRTPTIVIVWSILLASIFSLLWVKIDSFISDTQKAVAMGQCGVNC 304 L+GKQ+R PTI++VWSILLASI +LLWV+++ F++ + + CG++C Sbjct: 1021 LLGKQDRMPTIILVWSILLASILTLLWVRVNPFVAKGGPILEI--CGLDC 1068
>BPHL_HUMAN (Q86WA6) Valacyclovir hydrolase precursor (EC 3.1.-.-) (VACVase)| (Biphenyl hydrolase-like protein) (Biphenyl hydrolase-related protein) (Bph-rp) (Breast epithelial mucin-associated antigen) (MCNAA) Length = 291 Score = 29.3 bits (64), Expect = 4.8 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 5/43 (11%) Frame = -1 Query: 451 HGEAEP-----HADHRHRLVDPPRLHLLPPLGEDRLFHFRYPE 338 HGE +P HAD H+ V RLHL+P G+ L H R+ + Sbjct: 240 HGEKDPLVPRFHADFIHKHVKGSRLHLMPE-GKHNL-HLRFAD 280
>RD23D_ARATH (Q84L30) Putative DNA repair protein RAD23-4 (RAD23-like protein 4)| (AtRAD23-4) Length = 378 Score = 28.5 bits (62), Expect = 8.2 Identities = 16/49 (32%), Positives = 22/49 (44%) Frame = +2 Query: 191 NNLDKNPSVFIYNQKSRLTPSGIYTRGADAPERR*SDQQLTPHCPMATA 337 NN+ +N + I K++ +PSG T A AP TP TA Sbjct: 61 NNVVENSFIVIMLSKTKASPSGASTASAPAPSATQPQTVATPQVSAPTA 109 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,764,828 Number of Sequences: 219361 Number of extensions: 1351903 Number of successful extensions: 3161 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 3077 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3161 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2793557952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
