ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl30b01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 80 7e-12
2gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 80 7e-12
3emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa... 80 7e-12
4dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
5dbj|AK058226.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 3e-11
6dbj|AK058259.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 3e-11
7gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 78 3e-11
8emb|BX000491.1|CNS08CDH Oryza sativa chromosome 12, . BAC OSJNBb... 78 3e-11
9gb|BT018302.1| Zea mays clone EL01T0206E01.c mRNA sequence 46 0.099
10gb|BT016858.1| Zea mays clone Contig691 mRNA sequence 46 0.099
11emb|BX601644.6| Zebrafish DNA sequence from clone DKEY-21O13 in ... 46 0.099
12gb|AY103752.1| Zea mays PCO092520 mRNA sequence 46 0.099
13gb|AC006058.1| Homo sapiens 3p22-7 PAC RPCI4-555D20 (Roswell Par... 42 1.5
14gb|AC092624.2| Homo sapiens BAC clone RP11-261J9 from 2, complet... 42 1.5
15gb|DQ396371.1| HIV-1 isolate 03ZAPS155MB1 from South Africa, com... 40 6.1
16gb|AC115073.9| Mus musculus chromosome 8, clone RP24-417J18, com... 40 6.1
17emb|CR855994.1| Wallaby DNA sequence from clone MEKBa-69G12, com... 40 6.1
18emb|CR457441.5| Zebrafish DNA sequence from clone CH211-181D7 in... 40 6.1
19emb|BX649546.11| Zebrafish DNA sequence from clone DKEY-27C18 in... 40 6.1
20gb|AC182810.1| Gasterosteus aculeatus clone VMRC28-119K03, compl... 40 6.1
21gb|AC097475.2| Homo sapiens BAC clone RP11-95J1 from 4, complete... 40 6.1
22gb|AC092169.4| Homo sapiens BAC clone RP11-791I11 from 2, comple... 40 6.1
23gb|AC013440.7| Homo sapiens BAC clone RP11-292A20 from 2, comple... 40 6.1 
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
              complete sequence
          Length = 28386948

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 49/52 (94%)
 Strand = Plus / Minus

                                                                  
Query: 401    actcagtagcttcccattggaggcatcccgtatgctggcattggaccgggac 452
              ||||||||||||||||||||||||||||| ||||||||||| || |||||||
Sbjct: 243006 actcagtagcttcccattggaggcatcccatatgctggcataggtccgggac 242955



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 43/45 (95%)
 Strand = Plus / Minus

                                                           
Query: 211    ggctagagatttcgcttgccaaaattgtcctggtaccaaaagaat 255
              ||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 243157 ggctagagatttcactcgccaaaattgtcctggtaccaaaagaat 243113



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 72     aagtgtacatgcagaatgtctacaaacttt 101
              ||||||||||||| ||||||||||| ||||
Sbjct: 243309 aagtgtacatgcaaaatgtctacaagcttt 243280
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 49/52 (94%)
 Strand = Plus / Minus

                                                                  
Query: 401    actcagtagcttcccattggaggcatcccgtatgctggcattggaccgggac 452
              ||||||||||||||||||||||||||||| ||||||||||| || |||||||
Sbjct: 243006 actcagtagcttcccattggaggcatcccatatgctggcataggtccgggac 242955



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 43/45 (95%)
 Strand = Plus / Minus

                                                           
Query: 211    ggctagagatttcgcttgccaaaattgtcctggtaccaaaagaat 255
              ||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 243157 ggctagagatttcactcgccaaaattgtcctggtaccaaaagaat 243113



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 72     aagtgtacatgcagaatgtctacaaacttt 101
              ||||||||||||| ||||||||||| ||||
Sbjct: 243309 aagtgtacatgcaaaatgtctacaagcttt 243280
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>emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa0032J07 of library OSJNBa from
             chromosome 11 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 160673

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 49/52 (94%)
 Strand = Plus / Plus

                                                                 
Query: 401   actcagtagcttcccattggaggcatcccgtatgctggcattggaccgggac 452
             ||||||||||||||||||||||||||||| ||||||||||| || |||||||
Sbjct: 61987 actcagtagcttcccattggaggcatcccatatgctggcataggtccgggac 62038



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 43/45 (95%)
 Strand = Plus / Plus

                                                          
Query: 211   ggctagagatttcgcttgccaaaattgtcctggtaccaaaagaat 255
             ||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 61836 ggctagagatttcactcgccaaaattgtcctggtaccaaaagaat 61880



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 72    aagtgtacatgcagaatgtctacaaacttt 101
             ||||||||||||| ||||||||||| ||||
Sbjct: 61684 aagtgtacatgcaaaatgtctacaagcttt 61713
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12,
              complete sequence
          Length = 27566993

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 90/103 (87%), Gaps = 3/103 (2%)
 Strand = Plus / Minus

                                                                          
Query: 154    ctcatcctatccgaccgtaatatatata-atatagcatcctgtaattaactcaaactcgg 212
              |||||||||||| | ||||| ||| ||| |||||||| || | ||||||||| | || ||
Sbjct: 258602 ctcatcctatcccatcgtaacata-atatatatagcaaccagcaattaactcgacct-gg 258545

                                                         
Query: 213    ctagagatttcgcttgccaaaattgtcctggtaccaaaagaat 255
              ||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 258544 ctagagatttcactcgccaaaattgtcctggtaccaaaagaat 258502



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 40/41 (97%)
 Strand = Plus / Minus

                                                       
Query: 401    actcagtagcttcccattggaggcatcccgtatgctggcat 441
              ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 258397 actcagtagcttcccattggaggcatcccatatgctggcat 258357



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 72     aagtgtacatgcagaatgtctacaaacttt 101
              ||||||||||||| ||||||||||| ||||
Sbjct: 258700 aagtgtacatgcaaaatgtctacaagcttt 258671
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>dbj|AK058226.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-H07, full
           insert sequence
          Length = 847

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 90/103 (87%), Gaps = 3/103 (2%)
 Strand = Plus / Minus

                                                                       
Query: 154 ctcatcctatccgaccgtaatatatata-atatagcatcctgtaattaactcaaactcgg 212
           |||||||||||| | ||||| ||| ||| |||||||| || | ||||||||| | || ||
Sbjct: 576 ctcatcctatcccatcgtaacata-atatatatagcaaccagcaattaactcgacct-gg 519

                                                      
Query: 213 ctagagatttcgcttgccaaaattgtcctggtaccaaaagaat 255
           ||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 518 ctagagatttcactcgccaaaattgtcctggtaccaaaagaat 476



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 39/41 (95%)
 Strand = Plus / Minus

                                                    
Query: 401 actcagtagcttcccattggaggcatcccgtatgctggcat 441
           |||||||||||||||||||||||| |||| |||||||||||
Sbjct: 371 actcagtagcttcccattggaggcgtcccatatgctggcat 331



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 72  aagtgtacatgcagaatgtctacaaacttt 101
           ||||||||||||| ||||||||||| ||||
Sbjct: 674 aagtgtacatgcaaaatgtctacaagcttt 645
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>dbj|AK058259.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-012-E12, full
           insert sequence
          Length = 321

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 90/103 (87%), Gaps = 3/103 (2%)
 Strand = Plus / Minus

                                                                       
Query: 154 ctcatcctatccgaccgtaatatatata-atatagcatcctgtaattaactcaaactcgg 212
           |||||||||||| | ||||| ||| ||| |||||||| || | ||||||||| | || ||
Sbjct: 129 ctcatcctatcccatcgtaacata-atatatatagcaaccagcaattaactcgacct-gg 72

                                                      
Query: 213 ctagagatttcgcttgccaaaattgtcctggtaccaaaagaat 255
           ||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 71  ctagagatttcactcgccaaaattgtcctggtaccaaaagaat 29



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 72  aagtgtacatgcagaatgtctacaaacttt 101
           ||||||||||||| ||||||||||| ||||
Sbjct: 227 aagtgtacatgcaaaatgtctacaagcttt 198
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 90/103 (87%), Gaps = 3/103 (2%)
 Strand = Plus / Minus

                                                                          
Query: 154    ctcatcctatccgaccgtaatatatata-atatagcatcctgtaattaactcaaactcgg 212
              |||||||||||| | ||||| ||| ||| |||||||| || | ||||||||| | || ||
Sbjct: 258602 ctcatcctatcccatcgtaacata-atatatatagcaaccagcaattaactcgacct-gg 258545

                                                         
Query: 213    ctagagatttcgcttgccaaaattgtcctggtaccaaaagaat 255
              ||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 258544 ctagagatttcactcgccaaaattgtcctggtaccaaaagaat 258502



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 40/41 (97%)
 Strand = Plus / Minus

                                                       
Query: 401    actcagtagcttcccattggaggcatcccgtatgctggcat 441
              ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 258397 actcagtagcttcccattggaggcatcccatatgctggcat 258357



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 72     aagtgtacatgcagaatgtctacaaacttt 101
              ||||||||||||| ||||||||||| ||||
Sbjct: 258700 aagtgtacatgcaaaatgtctacaagcttt 258671
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>emb|BX000491.1|CNS08CDH Oryza sativa chromosome 12, . BAC OSJNBb0068K19 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 96667

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 90/103 (87%), Gaps = 3/103 (2%)
 Strand = Plus / Plus

                                                                         
Query: 154   ctcatcctatccgaccgtaatatatata-atatagcatcctgtaattaactcaaactcgg 212
             |||||||||||| | ||||| ||| ||| |||||||| || | ||||||||| | || ||
Sbjct: 16654 ctcatcctatcccatcgtaacata-atatatatagcaaccagcaattaactcgacct-gg 16711

                                                        
Query: 213   ctagagatttcgcttgccaaaattgtcctggtaccaaaagaat 255
             ||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 16712 ctagagatttcactcgccaaaattgtcctggtaccaaaagaat 16754



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 40/41 (97%)
 Strand = Plus / Plus

                                                      
Query: 401   actcagtagcttcccattggaggcatcccgtatgctggcat 441
             ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 16859 actcagtagcttcccattggaggcatcccatatgctggcat 16899



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 72    aagtgtacatgcagaatgtctacaaacttt 101
             ||||||||||||| ||||||||||| ||||
Sbjct: 16556 aagtgtacatgcaaaatgtctacaagcttt 16585
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>gb|BT018302.1| Zea mays clone EL01T0206E01.c mRNA sequence
          Length = 1090

 Score = 46.1 bits (23), Expect = 0.099
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                  
Query: 403 tcagtagcttcccattggaggcatcccgtatgctggcat 441
           ||||||||||||||| || ||||||||  ||||||||||
Sbjct: 821 tcagtagcttcccatcggtggcatcccaaatgctggcat 783
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>gb|BT016858.1| Zea mays clone Contig691 mRNA sequence
          Length = 1598

 Score = 46.1 bits (23), Expect = 0.099
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                   
Query: 403  tcagtagcttcccattggaggcatcccgtatgctggcat 441
            ||||||||||||||| || ||||||||  ||||||||||
Sbjct: 1339 tcagtagcttcccatcggtggcatcccaaatgctggcat 1301
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>emb|BX601644.6| Zebrafish DNA sequence from clone DKEY-21O13 in linkage group 9,
             complete sequence
          Length = 217065

 Score = 46.1 bits (23), Expect = 0.099
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 169   cgtaatatatataatatagcatc 191
             |||||||||||||||||||||||
Sbjct: 50545 cgtaatatatataatatagcatc 50523
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>gb|AY103752.1| Zea mays PCO092520 mRNA sequence
          Length = 1767

 Score = 46.1 bits (23), Expect = 0.099
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                   
Query: 403  tcagtagcttcccattggaggcatcccgtatgctggcat 441
            ||||||||||||||| || ||||||||  ||||||||||
Sbjct: 1433 tcagtagcttcccatcggtggcatcccaaatgctggcat 1395
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>gb|AC006058.1| Homo sapiens 3p22-7 PAC RPCI4-555D20 (Roswell Park Cancer Institute Human
              PAC Library) complete sequence
          Length = 147146

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 318    ttctcatgatttcctccctcc 338
              |||||||||||||||||||||
Sbjct: 104363 ttctcatgatttcctccctcc 104343
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>gb|AC092624.2| Homo sapiens BAC clone RP11-261J9 from 2, complete sequence
          Length = 101158

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 170   gtaatatatataatatagcat 190
             |||||||||||||||||||||
Sbjct: 92775 gtaatatatataatatagcat 92795
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>gb|DQ396371.1| HIV-1 isolate 03ZAPS155MB1 from South Africa, complete genome
          Length = 9008

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 265  aacacaaccaatgacgcaga 284
            ||||||||||||||||||||
Sbjct: 6810 aacacaaccaatgacgcaga 6829
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>gb|AC115073.9| Mus musculus chromosome 8, clone RP24-417J18, complete sequence
          Length = 161625

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 171    taatatatataatatagcat 190
              ||||||||||||||||||||
Sbjct: 118061 taatatatataatatagcat 118042
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>emb|CR855994.1| Wallaby DNA sequence from clone MEKBa-69G12, complete sequence
          Length = 174698

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 347    tgagatatttcacatcatct 366
              ||||||||||||||||||||
Sbjct: 163435 tgagatatttcacatcatct 163454
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>emb|CR457441.5| Zebrafish DNA sequence from clone CH211-181D7 in linkage group 15,
              complete sequence
          Length = 135398

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 249    aaagaatattaactggaaca 268
              ||||||||||||||||||||
Sbjct: 101522 aaagaatattaactggaaca 101503
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>emb|BX649546.11| Zebrafish DNA sequence from clone DKEY-27C18 in linkage group 3,
             complete sequence
          Length = 124731

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 305   tctctgggatacattctcat 324
             ||||||||||||||||||||
Sbjct: 11920 tctctgggatacattctcat 11901
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>gb|AC182810.1| Gasterosteus aculeatus clone VMRC28-119K03, complete sequence
          Length = 131913

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 102  caatataacacctatacaaa 121
            ||||||||||||||||||||
Sbjct: 1186 caatataacacctatacaaa 1167
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>gb|AC097475.2| Homo sapiens BAC clone RP11-95J1 from 4, complete sequence
          Length = 136159

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 85     gaatgtctacaaactttcaa 104
              ||||||||||||||||||||
Sbjct: 100323 gaatgtctacaaactttcaa 100304
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>gb|AC092169.4| Homo sapiens BAC clone RP11-791I11 from 2, complete sequence
          Length = 192927

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 238    tcctggtaccaaaagaatat 257
              ||||||||||||||||||||
Sbjct: 117476 tcctggtaccaaaagaatat 117457
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>gb|AC013440.7| Homo sapiens BAC clone RP11-292A20 from 2, complete sequence
          Length = 158548

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 238   tcctggtaccaaaagaatat 257
             ||||||||||||||||||||
Sbjct: 93315 tcctggtaccaaaagaatat 93296


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,645,426
Number of Sequences: 3902068
Number of extensions: 4645426
Number of successful extensions: 126558
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 126368
Number of HSP's gapped (non-prelim): 190
length of query: 452
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 430
effective length of database: 17,147,199,772
effective search space: 7373295901960
effective search space used: 7373295901960
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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