Clone Name | rbastl30a10 |
---|---|
Clone Library Name | barley_pub |
>gb|AC144538.23| Medicago truncatula clone mth2-31l21, complete sequence Length = 135050 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Plus Query: 62 aacaatacacgtgacagaaaacaaca 87 ||||||||| |||||||||||||||| Sbjct: 61572 aacaatacaagtgacagaaaacaaca 61597
>gb|U55182.1|HSGOLF03 Homo sapiens Golf alpha gene, exons 6, 7, 8, 9, and 10 Length = 13452 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Minus Query: 79 aaaacaacaacaccaagaaatcttaa 104 |||||||||||| ||||||||||||| Sbjct: 11441 aaaacaacaacaacaagaaatcttaa 11416
>gb|AC108120.3| Homo sapiens chromosome 5 clone RP11-524L6, complete sequence Length = 212755 Score = 44.1 bits (22), Expect = 0.36 Identities = 28/30 (93%) Strand = Plus / Minus Query: 68 acacgtgacagaaaacaacaacaccaagaa 97 |||| ||||||||| ||||||||||||||| Sbjct: 192225 acacatgacagaaaccaacaacaccaagaa 192196
>gb|AY083540.1| Macaca mulatta collagen-like tail subunit of asymmetric acetylcholinesterase (COLQ) gene, 3' UTR Length = 401 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 306 tcaggctcatcaaatagctttg 327 |||||||||||||||||||||| Sbjct: 255 tcaggctcatcaaatagctttg 234
>gb|AC120113.2| Homo sapiens chromosome 5 clone CTD-2324F19, complete sequence Length = 129346 Score = 44.1 bits (22), Expect = 0.36 Identities = 28/30 (93%) Strand = Plus / Minus Query: 68 acacgtgacagaaaacaacaacaccaagaa 97 |||| ||||||||| ||||||||||||||| Sbjct: 52427 acacatgacagaaaccaacaacaccaagaa 52398
>dbj|AP001269.4| Homo sapiens genomic DNA, chromosome 18 clone:RP11-820I16, complete sequences Length = 146181 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Minus Query: 79 aaaacaacaacaccaagaaatcttaa 104 |||||||||||| ||||||||||||| Sbjct: 7214 aaaacaacaacaacaagaaatcttaa 7189
>gb|AF158748.3| Homo sapiens map 2q37.3, genomic sequence Length = 65674 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 77 agaaaacaacaacaccaagaa 97 ||||||||||||||||||||| Sbjct: 40286 agaaaacaacaacaccaagaa 40266
>gb|AC156020.2| Mus musculus BAC clone RP23-343A9 from chromosome 16, complete sequence Length = 215559 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 236 acaacagaaactccacataca 256 ||||||||||||||||||||| Sbjct: 124435 acaacagaaactccacataca 124455
>gb|AY714221.1| Homo sapiens peptidylprolyl isomerase D (cyclophilin D) (PPID) gene, complete cds Length = 17435 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 158 gtacacaagggtcttcagaga 178 ||||||||||||||||||||| Sbjct: 8355 gtacacaagggtcttcagaga 8335
>gb|AC155823.8| Mus musculus BAC clone RP23-348C5 from chromosome 8, complete sequence Length = 219597 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 236 acaacagaaactccacataca 256 ||||||||||||||||||||| Sbjct: 128646 acaacagaaactccacataca 128666
>gb|AC111007.4| Mus musculus BAC clone RP23-226I10 from 3, complete sequence Length = 176259 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 357 aatataaacatctacttcagt 377 ||||||||||||||||||||| Sbjct: 14410 aatataaacatctacttcagt 14430
>dbj|D63861.1| Homo sapiens DNA for cyclophilin 40, complete cds Length = 17133 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 158 gtacacaagggtcttcagaga 178 ||||||||||||||||||||| Sbjct: 8937 gtacacaagggtcttcagaga 8917
>gb|AC107219.5| Homo sapiens BAC clone RP11-575B4 from 4, complete sequence Length = 187431 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 158 gtacacaagggtcttcagaga 178 ||||||||||||||||||||| Sbjct: 80966 gtacacaagggtcttcagaga 80986
>emb|BX510306.17| Zebrafish DNA sequence from clone CH211-195F19 in linkage group 13, complete sequence Length = 194184 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 197 cgatttatgacatggcatgtt 217 ||||||||||||||||||||| Sbjct: 179702 cgatttatgacatggcatgtt 179682
>gb|AC124862.4| Homo sapiens BAC clone RP11-27M15 from 2, complete sequence Length = 160111 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 77 agaaaacaacaacaccaagaa 97 ||||||||||||||||||||| Sbjct: 26128 agaaaacaacaacaccaagaa 26148
>emb|BX000536.7| Zebrafish DNA sequence from clone CH211-10C6 in linkage group 7, complete sequence Length = 199752 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 199 atttatgacatggcatgttct 219 ||||||||||||||||||||| Sbjct: 16908 atttatgacatggcatgttct 16928
>emb|BX005450.9| Zebrafish DNA sequence from clone CH211-150O23, complete sequence Length = 164218 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 197 cgatttatgacatggcatgtt 217 ||||||||||||||||||||| Sbjct: 18600 cgatttatgacatggcatgtt 18580
>gb|AC131979.10| Mus musculus chromosome 16, clone RP24-156L5, complete sequence Length = 156267 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 236 acaacagaaactccacataca 256 ||||||||||||||||||||| Sbjct: 139125 acaacagaaactccacataca 139145
>gb|AC147237.3| Mus musculus BAC clone RP23-370E6 from 3, complete sequence Length = 175691 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 357 aatataaacatctacttcagt 377 ||||||||||||||||||||| Sbjct: 19358 aatataaacatctacttcagt 19338
>gb|AC136741.24| Mus musculus chromosome 7, clone RP23-172P1, complete sequence Length = 211802 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 62 aacaatacacgtgacagaaaa 82 ||||||||||||||||||||| Sbjct: 100207 aacaatacacgtgacagaaaa 100227
>gb|AC116778.9| Mus musculus chromosome 1, clone RP24-481H3, complete sequence Length = 132180 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 cacaacagaaactccacata 254 |||||||||||||||||||| Sbjct: 67783 cacaacagaaactccacata 67802
>emb|CR792425.6| Zebrafish DNA sequence from clone DKEY-81N9 in linkage group 2, complete sequence Length = 168311 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 gatttatgacatggcatgtt 217 |||||||||||||||||||| Sbjct: 15423 gatttatgacatggcatgtt 15442
>gb|AC122010.3| Mus musculus BAC clone RP24-349I15 from chromosome 8, complete sequence Length = 198118 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 gtgacagaaaacaacaacac 91 |||||||||||||||||||| Sbjct: 53953 gtgacagaaaacaacaacac 53972
>emb|AL590006.4| Human DNA sequence from clone RP11-103C16 on chromosome 6 Contains part of the PTPRK gene for protein tyrosine phosphatase receptor type K (R-PTP-KAPPA) and the 3' end of a novel gene, complete sequence Length = 42689 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 tcaaatagctttggatgact 334 |||||||||||||||||||| Sbjct: 36429 tcaaatagctttggatgact 36448
>emb|AL354823.7| Human DNA sequence from clone RP11-452L13 on chromosome 13, complete sequence Length = 101091 Score = 40.1 bits (20), Expect = 5.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 68 acacgtgacagaaaacaacaacaccaagaaat 99 |||||||| |||||||||||||| ||||||| Sbjct: 71013 acacgtgagagaaaacaacaacaaaaagaaat 70982
>gb|AC091617.2| Rattus norvegicus strain Brown Norway clone RP31-371K3, complete sequence Length = 150494 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 aaaacaacaacaccaagaaa 98 |||||||||||||||||||| Sbjct: 39068 aaaacaacaacaccaagaaa 39049
>emb|BX571869.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment 11/17 Length = 349284 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 gacatggcatgttcttcaga 224 |||||||||||||||||||| Sbjct: 309614 gacatggcatgttcttcaga 309633
>emb|AJ130881.1|HBI130881 Helicobacter bizzozeronii ureB gene, partial, isolate CCUG 35545 Length = 692 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 207 catggcatgttcttcagaggcacg 230 |||||||| ||||||||||||||| Sbjct: 529 catggcatattcttcagaggcacg 506
>gb|AF330621.1| Helicobacter bizzozeronii tRNA ribosyltransferase gene, partial cds; GidB, complete cds; urease gene cluster, complete sequence and unknown gene Length = 8406 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 207 catggcatgttcttcagaggcacg 230 |||||||| ||||||||||||||| Sbjct: 3633 catggcatattcttcagaggcacg 3610
>emb|AL669814.16| Mouse DNA sequence from clone RP23-431J18 on chromosome 11 Contains the 5' end of the Ranbp17 gene for RAN binding protein 17, the Gabrp gene for gamma-aminobutyric acid (GABA-A) receptor, pi, the 3' end of the Kcnip1 gene for Kv channel-interacting protein 1 and a CpG island, complete sequence Length = 198320 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 73 tgacagaaaacaacaacaccaaga 96 |||||||||||||||||| ||||| Sbjct: 26099 tgacagaaaacaacaacaacaaga 26122
>gb|AC087358.9| Homo sapiens chromosome 8, clone RP11-442A17, complete sequence Length = 183097 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 75 acagaaaacaacaacaccaagaaa 98 |||||||||||||||| ||||||| Sbjct: 21952 acagaaaacaacaacaacaagaaa 21975
>emb|BX569778.15| Zebrafish DNA sequence from clone DKEY-21J8 in linkage group 1, complete sequence Length = 255895 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 gatttatgacatggcatgtt 217 |||||||||||||||||||| Sbjct: 115804 gatttatgacatggcatgtt 115823
>gb|AC010363.7| Homo sapiens chromosome 5 clone CTD-2039P12, complete sequence Length = 138587 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 aaaacaacaacaccaagaaa 98 |||||||||||||||||||| Sbjct: 69816 aaaacaacaacaccaagaaa 69797
>gb|AC148683.1| Macaca mulatta Major Histocompatibility Complex BAC MMU162B17, complete sequence Length = 181079 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 243 aaactccacatacaaaagaa 262 |||||||||||||||||||| Sbjct: 179840 aaactccacatacaaaagaa 179859
>dbj|AB128049.1| Macaca mulatta genes, MHC class I region, partial and complete cds Length = 3284914 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 aaactccacatacaaaagaa 262 |||||||||||||||||||| Sbjct: 2042297 aaactccacatacaaaagaa 2042278
>emb|AL929023.3| Zebrafish DNA sequence from clone DKEY-98G12 in linkage group 17, complete sequence Length = 198736 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 tgacagaaaacaacaacacc 92 |||||||||||||||||||| Sbjct: 195588 tgacagaaaacaacaacacc 195569
>emb|BX957241.13| Zebrafish DNA sequence from clone CH211-197N10 in linkage group 19, complete sequence Length = 199001 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 tttgtaatggcatgacagaa 62 |||||||||||||||||||| Sbjct: 67779 tttgtaatggcatgacagaa 67798
>emb|CR855880.13| Zebrafish DNA sequence from clone DKEY-215C14 in linkage group 17, complete sequence Length = 115843 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 tgacagaaaacaacaacacc 92 |||||||||||||||||||| Sbjct: 48322 tgacagaaaacaacaacacc 48303
>gb|AC005244.1|AC005244 Homo sapiens chromosome 17, clone hRPK.471_L_13, complete sequence Length = 127506 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 75 acagaaaacaacaacaccaagaaa 98 |||||||||||||||| ||||||| Sbjct: 70382 acagaaaacaacaacatcaagaaa 70359
>gb|AF508003.1| Helicobacter bizzozeronii strain Storkis urease UreA (ureA) and urease UreB (ureB) genes, partial cds Length = 1665 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 207 catggcatgttcttcagaggcacg 230 |||||||| ||||||||||||||| Sbjct: 1080 catggcatattcttcagaggcacg 1057
>emb|AL672303.5| Mouse DNA sequence from clone RP23-461A6 on chromosome X, complete sequence Length = 200875 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 acaacagaaactccacatac 255 |||||||||||||||||||| Sbjct: 798 acaacagaaactccacatac 779
>emb|AL928730.7| Mouse DNA sequence from clone RP23-186A19 on chromosome X, complete sequence Length = 188862 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 acaacagaaactccacatac 255 |||||||||||||||||||| Sbjct: 187660 acaacagaaactccacatac 187641 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,933,748 Number of Sequences: 3902068 Number of extensions: 3933748 Number of successful extensions: 78224 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 78137 Number of HSP's gapped (non-prelim): 87 length of query: 420 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 398 effective length of database: 17,147,199,772 effective search space: 6824585509256 effective search space used: 6824585509256 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)