ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl30a06 |
|---|---|
| Clone Library Name | barley_pub |
>PMA1_LYCES (P22180) Plasma membrane ATPase 1 (EC 3.6.3.6) (Proton pump 1)| Length = 956 Score = 58.2 bits (139), Expect = 1e-08 Identities = 28/28 (100%), Positives = 28/28 (100%) Frame = -2 Query: 460 LHTLKGHVESVVKLKGLDIETIQQSYTV 377 LHTLKGHVESVVKLKGLDIETIQQSYTV Sbjct: 929 LHTLKGHVESVVKLKGLDIETIQQSYTV 956
>PMA2_LYCES (P23980) Plasma membrane ATPase 2 (EC 3.6.3.6) (Proton pump 2)| (Fragment) Length = 704 Score = 58.2 bits (139), Expect = 1e-08 Identities = 28/28 (100%), Positives = 28/28 (100%) Frame = -2 Query: 460 LHTLKGHVESVVKLKGLDIETIQQSYTV 377 LHTLKGHVESVVKLKGLDIETIQQSYTV Sbjct: 677 LHTLKGHVESVVKLKGLDIETIQQSYTV 704
>PMA3_NICPL (Q08436) Plasma membrane ATPase 3 (EC 3.6.3.6) (Proton pump 3)| Length = 956 Score = 57.0 bits (136), Expect = 2e-08 Identities = 27/28 (96%), Positives = 28/28 (100%) Frame = -2 Query: 460 LHTLKGHVESVVKLKGLDIETIQQSYTV 377 LHTLKGHVESVVKLKGLDIETIQQ+YTV Sbjct: 929 LHTLKGHVESVVKLKGLDIETIQQAYTV 956
>PMA1_NICPL (Q08435) Plasma membrane ATPase 1 (EC 3.6.3.6) (Proton pump 1)| Length = 957 Score = 57.0 bits (136), Expect = 2e-08 Identities = 27/28 (96%), Positives = 28/28 (100%) Frame = -2 Query: 460 LHTLKGHVESVVKLKGLDIETIQQSYTV 377 LHTLKGHVESVVKLKGLDIETIQQ+YTV Sbjct: 930 LHTLKGHVESVVKLKGLDIETIQQAYTV 957
>PMA4_NICPL (Q03194) Plasma membrane ATPase 4 (EC 3.6.3.6) (Proton pump 4)| Length = 952 Score = 56.2 bits (134), Expect = 4e-08 Identities = 27/28 (96%), Positives = 27/28 (96%) Frame = -2 Query: 460 LHTLKGHVESVVKLKGLDIETIQQSYTV 377 LHTLKGHVESVVKLKGLDIETIQQ YTV Sbjct: 925 LHTLKGHVESVVKLKGLDIETIQQHYTV 952
>PMA4_ARATH (Q9SU58) ATPase 4, plasma membrane-type (EC 3.6.3.6) (Proton pump 4)| Length = 960 Score = 55.8 bits (133), Expect = 5e-08 Identities = 26/28 (92%), Positives = 28/28 (100%) Frame = -2 Query: 460 LHTLKGHVESVVKLKGLDIETIQQSYTV 377 LHTLKGHVESVV+LKGLDIETIQQ+YTV Sbjct: 933 LHTLKGHVESVVRLKGLDIETIQQAYTV 960
>PMA11_ARATH (Q9LV11) ATPase 11, plasma membrane-type (EC 3.6.3.6) (Proton pump| 11) Length = 956 Score = 55.8 bits (133), Expect = 5e-08 Identities = 26/28 (92%), Positives = 28/28 (100%) Frame = -2 Query: 460 LHTLKGHVESVVKLKGLDIETIQQSYTV 377 LHTLKGHVESVV+LKGLDIETIQQ+YTV Sbjct: 929 LHTLKGHVESVVRLKGLDIETIQQAYTV 956
>PMA8_ARATH (Q9M2A0) ATPase 8, plasma membrane-type (EC 3.6.3.6) (Proton pump 8)| Length = 948 Score = 55.1 bits (131), Expect = 9e-08 Identities = 26/28 (92%), Positives = 27/28 (96%) Frame = -2 Query: 460 LHTLKGHVESVVKLKGLDIETIQQSYTV 377 LHTLKGHVESVVKLKGLDI+TIQQ YTV Sbjct: 921 LHTLKGHVESVVKLKGLDIDTIQQHYTV 948
>PMA5_ARATH (Q9SJB3) ATPase 5, plasma membrane-type (EC 3.6.3.6) (Proton pump 5)| Length = 948 Score = 51.6 bits (122), Expect = 1e-06 Identities = 24/28 (85%), Positives = 27/28 (96%) Frame = -2 Query: 460 LHTLKGHVESVVKLKGLDIETIQQSYTV 377 ++TLKGHVESVVKLKGLDI+TIQQ YTV Sbjct: 921 INTLKGHVESVVKLKGLDIDTIQQHYTV 948
>PMA1_WHEAT (P83970) Plasma membrane ATPase (EC 3.6.3.6) (Proton pump)| Length = 951 Score = 51.2 bits (121), Expect = 1e-06 Identities = 24/28 (85%), Positives = 27/28 (96%) Frame = -2 Query: 460 LHTLKGHVESVVKLKGLDIETIQQSYTV 377 L+TLKGHVESVVKLKGLDI+TI Q+YTV Sbjct: 924 LNTLKGHVESVVKLKGLDIDTINQNYTV 951
>PMA9_ARATH (Q42556) ATPase 9, plasma membrane-type (EC 3.6.3.6) (Proton pump 9)| Length = 954 Score = 49.3 bits (116), Expect = 5e-06 Identities = 23/27 (85%), Positives = 24/27 (88%) Frame = -2 Query: 457 HTLKGHVESVVKLKGLDIETIQQSYTV 377 HTLKGHVESVVK KGLDIE IQQ YT+ Sbjct: 928 HTLKGHVESVVKQKGLDIEAIQQHYTL 954
>PMA6_ARATH (Q9SH76) ATPase 6, plasma membrane-type (EC 3.6.3.6) (Proton pump 6)| Length = 949 Score = 49.3 bits (116), Expect = 5e-06 Identities = 22/28 (78%), Positives = 25/28 (89%) Frame = -2 Query: 460 LHTLKGHVESVVKLKGLDIETIQQSYTV 377 +HTLKGHVESVVKLKGLDI+ + Q YTV Sbjct: 922 VHTLKGHVESVVKLKGLDIDNLNQHYTV 949
>PMA1_ARATH (P20649) ATPase 1, plasma membrane-type (EC 3.6.3.6) (Proton pump 1)| Length = 948 Score = 47.0 bits (110), Expect = 2e-05 Identities = 22/28 (78%), Positives = 23/28 (82%) Frame = -2 Query: 460 LHTLKGHVESVVKLKGLDIETIQQSYTV 377 LHTLKGHVESV KLKGLDI+T YTV Sbjct: 921 LHTLKGHVESVAKLKGLDIDTAGHHYTV 948
>PMA2_ARATH (P19456) ATPase 2, plasma membrane-type (EC 3.6.3.6) (Proton pump 2)| Length = 947 Score = 45.8 bits (107), Expect = 5e-05 Identities = 24/28 (85%), Positives = 24/28 (85%) Frame = -2 Query: 460 LHTLKGHVESVVKLKGLDIETIQQSYTV 377 LHTLKGHVESVVKLKGLDIET YTV Sbjct: 921 LHTLKGHVESVVKLKGLDIET-PSHYTV 947
>PMA3_ARATH (P20431) ATPase 3, plasma membrane-type (EC 3.6.3.6) (Proton pump 3)| Length = 948 Score = 45.4 bits (106), Expect = 7e-05 Identities = 24/28 (85%), Positives = 24/28 (85%) Frame = -2 Query: 460 LHTLKGHVESVVKLKGLDIETIQQSYTV 377 LHTLKGHVESVVKLKGLDIET YTV Sbjct: 922 LHTLKGHVESVVKLKGLDIETAGH-YTV 948
>NU1M_ASCSU (P24875) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) Length = 290 Score = 30.8 bits (68), Expect = 1.8 Identities = 10/29 (34%), Positives = 21/29 (72%) Frame = -2 Query: 172 FCLFFMFSASMYIMFPPFIFSLLPHVDKS 86 FC F F+ S++I++ PF+F +L ++++ Sbjct: 162 FCFFSFFNLSLFIVYLPFLFMVLAELNRA 190
>PMA7_ARATH (Q9LY32) ATPase 7, plasma membrane-type (EC 3.6.3.6) (Proton pump| 7) Length = 961 Score = 30.8 bits (68), Expect = 1.8 Identities = 14/20 (70%), Positives = 15/20 (75%) Frame = -2 Query: 460 LHTLKGHVESVVKLKGLDIE 401 L TLKG VES KLKG D+E Sbjct: 933 LQTLKGKVESAAKLKGYDLE 952
>PMA10_ARATH (Q43128) ATPase 10, plasma membrane-type (EC 3.6.3.6) (Proton pump| 10) Length = 947 Score = 30.0 bits (66), Expect = 3.0 Identities = 12/28 (42%), Positives = 21/28 (75%) Frame = -2 Query: 460 LHTLKGHVESVVKLKGLDIETIQQSYTV 377 +H++ H+ESV+KLK +D I+ ++TV Sbjct: 920 VHSVSRHLESVIKLKQIDQRMIRAAHTV 947
>Y917_AQUAE (O67062) Hypothetical protein aq_917| Length = 408 Score = 29.6 bits (65), Expect = 3.9 Identities = 23/70 (32%), Positives = 34/70 (48%) Frame = -2 Query: 214 MQFGTT*VIAQPIFFCLFFMFSASMYIMFPPFIFSLLPHVDKSSMVMKCFLPGACLLSDV 35 M FG T + + F + MF + +P FI S LP + +V+K FLP L+ Sbjct: 185 MLFGWTATLVASVSFQVIEMFFVTP--PYPKFISSYLPKTVFTLLVLKVFLPNFSLID-- 240 Query: 34 *LLFGSNMFT 5 +F S +FT Sbjct: 241 --VFISLIFT 248
>IBP4_HUMAN (P22692) Insulin-like growth factor-binding protein 4 precursor| (IGFBP-4) (IBP-4) (IGF-binding protein 4) Length = 258 Score = 29.3 bits (64), Expect = 5.1 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%) Frame = +3 Query: 21 PNNSYT--SESRQAPGRKHFMTILDLSTCGSKLKMKG 125 PNNS++ S + +KHF I D ST G K+K+ G Sbjct: 124 PNNSFSPCSAHDRRCLQKHFAKIRDRSTSGGKMKVNG 160
>NUIM_TRYBB (P30826) NADH-ubiquinone oxidoreductase subunit 8 (EC 1.6.5.3)| (Maxicircle iron-sulfur protein 1) Length = 145 Score = 29.3 bits (64), Expect = 5.1 Identities = 11/16 (68%), Positives = 11/16 (68%) Frame = -3 Query: 51 VCFQMCSCCLVQICLP 4 VCF MC C V ICLP Sbjct: 12 VCFYMCFVCCVTICLP 27
>MTL5_MOUSE (Q9WTJ6) Tesmin (Metallothionein-like 5, testis-specific)| (Testis-specific metallothionein-like protein) Length = 295 Score = 29.3 bits (64), Expect = 5.1 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 8/72 (11%) Frame = +2 Query: 185 RDNLGGAKLHHQRATF*LQ*SCLEHYADDYSSRVHRSTLHSC-------R*PTIKLGIS- 340 + LG AKL H + + CL++Y + Y +++ S++ C P K+ +S Sbjct: 143 KGRLGAAKLRHSKGCNCKRSGCLKNYCECYEAKIMCSSICKCIACKNYEESPERKMLMST 202 Query: 341 PFFFLPGQRRSS 376 P + PG SS Sbjct: 203 PHYMEPGDFESS 214 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,214,386 Number of Sequences: 219361 Number of extensions: 1251030 Number of successful extensions: 2907 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 2851 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2907 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2968155324 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
