ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl30a03 |
|---|---|
| Clone Library Name | barley_pub |
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 96.7 bits (239), Expect = 2e-20 Identities = 46/61 (75%), Positives = 50/61 (81%) Frame = -3 Query: 450 RFGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSIS 271 RF +L IE +VV MN DP+LKNR GPAKFPYMLLYPNTSDH G A GLTA+GIPNSIS Sbjct: 802 RFSDRLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSIS 861 Query: 270 I 268 I Sbjct: 862 I 862
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 90.5 bits (223), Expect = 2e-18 Identities = 44/61 (72%), Positives = 47/61 (77%) Frame = -3 Query: 450 RFGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSIS 271 RFGA+L IE +VVAMN DP KNR GP FPY LLYPNTSD G A GL+ARGIPNSIS Sbjct: 810 RFGARLTEIESRVVAMNKDPHRKNRVGPTNFPYTLLYPNTSDLKGDAAGLSARGIPNSIS 869 Query: 270 I 268 I Sbjct: 870 I 870
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 87.4 bits (215), Expect = 1e-17 Identities = 43/61 (70%), Positives = 48/61 (78%) Frame = -3 Query: 450 RFGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSIS 271 RF +L IE +VV MN D LKNR GPA+FPYMLLYPNTSD TG A G+TA+GIPNSIS Sbjct: 806 RFSDRLVEIEGKVVGMNGDAGLKNRNGPAEFPYMLLYPNTSDVTGAAAGITAKGIPNSIS 865 Query: 270 I 268 I Sbjct: 866 I 866
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 87.0 bits (214), Expect = 2e-17 Identities = 41/61 (67%), Positives = 48/61 (78%) Frame = -3 Query: 450 RFGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSIS 271 RF +L IE +V+ MN DP LKNR GPA FPY L++PNTSD+ G AEG+TARGIPNSIS Sbjct: 803 RFSRQLVEIESKVLNMNKDPLLKNRVGPANFPYTLMFPNTSDNKGAAEGITARGIPNSIS 862 Query: 270 I 268 I Sbjct: 863 I 863
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 77.4 bits (189), Expect = 2e-14 Identities = 39/62 (62%), Positives = 46/62 (74%), Gaps = 1/62 (1%) Frame = -3 Query: 450 RFGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQ-AEGLTARGIPNSI 274 RFG++L IE ++ MN + LKNR GP K PYMLLYPNTSD T + +GLTA GIPNSI Sbjct: 816 RFGSRLVDIENRIKDMNGNSALKNRNGPVKMPYMLLYPNTSDVTKEKGQGLTAMGIPNSI 875 Query: 273 SI 268 SI Sbjct: 876 SI 877
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 71.6 bits (174), Expect = 8e-13 Identities = 37/61 (60%), Positives = 43/61 (70%) Frame = -3 Query: 450 RFGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSIS 271 RFG KLE IEK+++ N D L+NR GPAK PY LLYP++ EGLT RGIPNSIS Sbjct: 799 RFGKKLEEIEKKLIEKNKDETLRNRYGPAKMPYTLLYPSSE------EGLTFRGIPNSIS 852 Query: 270 I 268 I Sbjct: 853 I 853
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 70.5 bits (171), Expect = 2e-12 Identities = 36/61 (59%), Positives = 42/61 (68%) Frame = -3 Query: 450 RFGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSIS 271 RFG+KL GIE ++ A NSDP L+NRTGP + PY LL H EGLT +GIPNSIS Sbjct: 810 RFGSKLTGIEGKINARNSDPSLRNRTGPVQLPYTLL------HRSSEEGLTFKGIPNSIS 863 Query: 270 I 268 I Sbjct: 864 I 864
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 66.6 bits (161), Expect = 3e-11 Identities = 34/61 (55%), Positives = 41/61 (67%) Frame = -3 Query: 450 RFGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSIS 271 RFG KL IE+++ N+D L+NR GP K PY LLYP++ EGLT RGIPNSIS Sbjct: 812 RFGKKLAEIEEKLTQRNNDESLRNRYGPVKMPYTLLYPSSE------EGLTCRGIPNSIS 865 Query: 270 I 268 I Sbjct: 866 I 866
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 65.9 bits (159), Expect = 5e-11 Identities = 33/61 (54%), Positives = 40/61 (65%) Frame = -3 Query: 450 RFGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSIS 271 RFG KL+ IE++++ N D L+NR GP K PY +L P D EGLT RGIPNSIS Sbjct: 807 RFGQKLKEIEEKIMGRNKDSSLRNRNGPVKMPYTVLLPTCED-----EGLTFRGIPNSIS 861 Query: 270 I 268 I Sbjct: 862 I 862
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 64.7 bits (156), Expect = 1e-10 Identities = 33/61 (54%), Positives = 42/61 (68%) Frame = -3 Query: 450 RFGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSIS 271 +FG KL IEK++ N+D +L+NR GP + PY LLYP++ EGLT RGIPNSIS Sbjct: 807 KFGNKLAEIEKKLTQRNNDEKLRNRHGPVEMPYTLLYPSSK------EGLTFRGIPNSIS 860 Query: 270 I 268 I Sbjct: 861 I 861
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 63.5 bits (153), Expect = 2e-10 Identities = 32/61 (52%), Positives = 41/61 (67%) Frame = -3 Query: 450 RFGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSIS 271 +FG KL+ IE+++ N+D L NR GP + PY LL+PN +EGLT RGIPNSIS Sbjct: 812 KFGNKLKEIEEKLARKNNDQSLSNRLGPVQLPYTLLHPN-------SEGLTCRGIPNSIS 864 Query: 270 I 268 I Sbjct: 865 I 865
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 63.5 bits (153), Expect = 2e-10 Identities = 34/62 (54%), Positives = 44/62 (70%), Gaps = 1/62 (1%) Frame = -3 Query: 450 RFGAKLEGIEKQVVAMNSDPQLK-NRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSI 274 +FG KL+ IE+++V N+DP L+ NR GP + PY LLYP++ EGLT RGIPNSI Sbjct: 784 KFGNKLKEIEEKLVRRNNDPSLQGNRLGPVQLPYTLLYPSSE------EGLTFRGIPNSI 837 Query: 273 SI 268 SI Sbjct: 838 SI 839
>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)| Length = 861 Score = 61.6 bits (148), Expect = 9e-10 Identities = 31/61 (50%), Positives = 38/61 (62%) Frame = -3 Query: 450 RFGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSIS 271 RFG KL IEKQ++ N D L NR+GP PY LL+P + GLT +GIPNS+S Sbjct: 807 RFGKKLTDIEKQIIQRNGDNILTNRSGPVNAPYTLLFPTSEG------GLTGKGIPNSVS 860 Query: 270 I 268 I Sbjct: 861 I 861
>LOXB_PHAVU (P27481) Lipoxygenase (EC 1.13.11.12) (Fragment)| Length = 741 Score = 61.6 bits (148), Expect = 9e-10 Identities = 32/55 (58%), Positives = 38/55 (69%) Frame = -3 Query: 450 RFGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGI 286 RFG KL IEK++V N+D L+NRTGPAK PY LLYP++ EGLT RGI Sbjct: 693 RFGKKLAEIEKKLVQKNNDETLRNRTGPAKMPYTLLYPSSE------EGLTFRGI 741
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 60.8 bits (146), Expect = 1e-09 Identities = 30/61 (49%), Positives = 38/61 (62%) Frame = -3 Query: 450 RFGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSIS 271 RFG L IE +++ MNS KNR+GP PY LL+P + EGLT +GIPNS+S Sbjct: 805 RFGKMLSDIENRIMIMNSHKSWKNRSGPVNVPYTLLFPTSE------EGLTGKGIPNSVS 858 Query: 270 I 268 I Sbjct: 859 I 859
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 60.5 bits (145), Expect = 2e-09 Identities = 32/61 (52%), Positives = 40/61 (65%) Frame = -3 Query: 450 RFGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSIS 271 RFG KL IE ++ N+D +L+NR GP + PY LL P++ EGLT RGIPNSIS Sbjct: 803 RFGNKLAQIENKLSERNNDEKLRNRCGPVQMPYTLLLPSSK------EGLTFRGIPNSIS 856 Query: 270 I 268 I Sbjct: 857 I 857
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 60.1 bits (144), Expect = 3e-09 Identities = 31/61 (50%), Positives = 40/61 (65%) Frame = -3 Query: 450 RFGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSIS 271 +FG KL IE ++ N+DP L +R GP + PY LL+P++ EGLT RGIPNSIS Sbjct: 810 KFGNKLAEIEAKLTNKNNDPSLYHRVGPVQLPYTLLHPSSK------EGLTFRGIPNSIS 863 Query: 270 I 268 I Sbjct: 864 I 864
>LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12)| Length = 860 Score = 60.1 bits (144), Expect = 3e-09 Identities = 31/61 (50%), Positives = 38/61 (62%) Frame = -3 Query: 450 RFGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSIS 271 RFG KL IEKQ++ N + L NRTGP PY LL+P + GLT +GIPNS+S Sbjct: 806 RFGNKLTDIEKQIMQRNGNNILTNRTGPVNAPYTLLFPTSEG------GLTGKGIPNSVS 859 Query: 270 I 268 I Sbjct: 860 I 860
>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)| Length = 859 Score = 59.7 bits (143), Expect = 3e-09 Identities = 30/61 (49%), Positives = 39/61 (63%) Frame = -3 Query: 450 RFGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSIS 271 +FG K++ IEK + N D LKNRTG K PY LL+P++ G+T RGIPNS+S Sbjct: 805 KFGEKVKEIEKNIDERNDDETLKNRTGLVKMPYTLLFPSSEG------GVTGRGIPNSVS 858 Query: 270 I 268 I Sbjct: 859 I 859
>LOX5_ORYSA (Q7XV13) Putative lipoxygenase 5 (EC 1.13.11.12)| Length = 899 Score = 45.4 bits (106), Expect = 7e-05 Identities = 21/60 (35%), Positives = 34/60 (56%) Frame = -3 Query: 447 FGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 268 F A + E+++ N+DP +NR G PY L+ P++ G+T RG+PNS++I Sbjct: 846 FAADVRRAEEEIERRNADPSRRNRCGAGVLPYELMAPSS------GPGITCRGVPNSVTI 899
>LOX23_HORVU (Q8GSM2) Lipoxygenase 2.3, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:3) Length = 896 Score = 44.3 bits (103), Expect = 1e-04 Identities = 25/61 (40%), Positives = 34/61 (55%) Frame = -3 Query: 450 RFGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSIS 271 +F +L+ E + N++P+ KNR G PY LL P + G+T RGIPNSIS Sbjct: 842 KFSGRLKEAEGTIDMRNNNPENKNRCGAGIVPYELLKPFSE------PGVTGRGIPNSIS 895 Query: 270 I 268 I Sbjct: 896 I 896
>LOXC1_ORYSA (P38419) Lipoxygenase 7, chloroplast precursor (EC 1.13.11.12)| Length = 924 Score = 43.9 bits (102), Expect = 2e-04 Identities = 25/60 (41%), Positives = 32/60 (53%) Frame = -3 Query: 447 FGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 268 F A+L+ IE + N D +LKNR G PY L+ P + G+T GIPNS SI Sbjct: 871 FAARLKEIEGVIDGRNKDRKLKNRCGAGILPYQLMKPFSD------SGVTGMGIPNSTSI 924
>LOXC2_ORYSA (Q84YK8) Probable lipoxygenase 8, chloroplast precursor (EC| 1.13.11.12) Length = 941 Score = 42.7 bits (99), Expect = 4e-04 Identities = 25/60 (41%), Positives = 32/60 (53%) Frame = -3 Query: 447 FGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 268 F A+L+ IE + N D +LKNR G PY L+ P + G+T GIPNS SI Sbjct: 888 FTARLKEIEGVIDGRNKDRKLKNRCGAGILPYQLMKPFSD------AGVTGMGIPNSTSI 941
>LOX6_ORYSA (Q8H016) Probable lipoxygenase 6 (EC 1.13.11.12)| Length = 918 Score = 42.7 bits (99), Expect = 4e-04 Identities = 24/60 (40%), Positives = 32/60 (53%) Frame = -3 Query: 447 FGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 268 F A + E+ + N+D KNR G PY LL P++ G+T RG+PNSISI Sbjct: 865 FAADVRRAEETIERRNADHGRKNRCGAGVLPYELLAPSS------PPGVTCRGVPNSISI 918
>LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC 1.13.11.12)| (LOX-100) (LOX2:Hv:1) Length = 936 Score = 42.0 bits (97), Expect = 7e-04 Identities = 25/57 (43%), Positives = 31/57 (54%), Gaps = 4/57 (7%) Frame = -3 Query: 426 IEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTG----QAEGLTARGIPNSISI 268 I +QV N+DP KNR G PY+LL P+ D T + + GIPNSISI Sbjct: 880 IVEQVDEWNNDPDRKNRHGAGMVPYVLLRPSDGDPTDGDPTDEKMVMEMGIPNSISI 936
>LOX22_HORVU (Q8GSM3) Lipoxygenase 2.2, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:2) Length = 932 Score = 40.0 bits (92), Expect = 0.003 Identities = 24/60 (40%), Positives = 32/60 (53%) Frame = -3 Query: 447 FGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 268 F K+ I +QV N D +NR G PY+LL P + + A+ + GIPNSISI Sbjct: 874 FQKKMRDIAEQVEEWNKDDSRRNRHGAGVVPYVLLRP-LNGNPMDAKTVMEMGIPNSISI 932
>LOXC_ARATH (P38418) Lipoxygenase, chloroplast precursor (EC 1.13.11.12)| Length = 896 Score = 39.3 bits (90), Expect = 0.005 Identities = 26/61 (42%), Positives = 33/61 (54%) Frame = -3 Query: 450 RFGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSIS 271 RF KL+ +E + N + LKNR G Y LL P TS+H G+T G+P SIS Sbjct: 842 RFKGKLQYLEGVIDERNVNITLKNRAGAGVVKYELLKP-TSEH-----GVTGMGVPYSIS 895 Query: 270 I 268 I Sbjct: 896 I 896
>SYP_MYCTU (O05814) Prolyl-tRNA synthetase (EC 6.1.1.15) (Proline--tRNA| ligase) (ProRS) Length = 582 Score = 31.2 bits (69), Expect = 1.3 Identities = 20/40 (50%), Positives = 23/40 (57%) Frame = +1 Query: 247 TTDVLRSDGYAVRDAPGGEPLGLSRVVGGVWVEQHVWELG 366 T DVL DG VR G +G+SR+V V EQH ELG Sbjct: 438 TADVLGEDGKPVRLTMGSYGIGVSRLV-AVVAEQHHDELG 476
>SEPP1_PONPY (Q5R8W9) Selenoprotein P precursor (SeP)| Length = 381 Score = 30.4 bits (67), Expect = 2.2 Identities = 15/30 (50%), Positives = 16/30 (53%) Frame = -2 Query: 370 AGQVPIHAALPKHLRPHGTGRGAHRQGHPE 281 A P H A P L H +G HRQGHPE Sbjct: 231 APDAPTHPA-PPGLHHHHKHKGQHRQGHPE 259
>SEPP1_HUMAN (P49908) Selenoprotein P precursor (SeP)| Length = 381 Score = 30.4 bits (67), Expect = 2.2 Identities = 15/30 (50%), Positives = 16/30 (53%) Frame = -2 Query: 370 AGQVPIHAALPKHLRPHGTGRGAHRQGHPE 281 A P H A P L H +G HRQGHPE Sbjct: 231 APNAPTHPA-PPGLHHHHKHKGQHRQGHPE 259
>FOXJ3_MOUSE (Q8BUR3) Forkhead box protein J3| Length = 623 Score = 29.3 bits (64), Expect = 4.8 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 4/47 (8%) Frame = -2 Query: 394 PAAQEPHRAGQVPIHAALPKHLRPHGTGRG----AHRQGHPEQHIHL 266 P+ PHR +P H P+H PH H Q HP H H+ Sbjct: 380 PSPHTPHRPHGLPQHPQRPQHPAPHPQQHSQLQPPHSQ-HPPPHQHI 425
>FRIZ3_DROME (O77438) Protein frizzled-3 precursor (dFz3)| Length = 581 Score = 28.9 bits (63), Expect = 6.3 Identities = 24/72 (33%), Positives = 30/72 (41%), Gaps = 5/72 (6%) Frame = -3 Query: 351 MLLYPNTSDHTGQ--AEGLTARGIPNSISI*SEHVRR---RDLMLLCYPCLLTPELACVC 187 M PN + HT Q AE A+ +P S S R L LC P + P AC Sbjct: 55 MTALPNLAGHTNQLEAELQIAKLVPLIESGCSRRARFLLCSSLFPLCTPDVPRPVAACKL 114 Query: 186 VCDRELCRCMNN 151 +C+ CM N Sbjct: 115 LCETVRGECMEN 126
>UD12_MOUSE (P70691) UDP-glucuronosyltransferase 1-2 precursor (EC 2.4.1.17)| (UDPGT) (UGT1*0) (UGT1-02) (UGT1.2) (UGT1A2) (Bilirubin specific) Length = 533 Score = 28.9 bits (63), Expect = 6.3 Identities = 14/25 (56%), Positives = 17/25 (68%) Frame = +2 Query: 374 VRFLSCGSEFMATTCFSMPSSFAPN 448 +R LSCG E+ AT C PSS+ PN Sbjct: 172 LRSLSCGIEYEATQC-PNPSSYIPN 195 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,947,392 Number of Sequences: 219361 Number of extensions: 1371525 Number of successful extensions: 3701 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 3551 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3672 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2793557952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
