>CD48D_ARATH (Q9SCN8) Putative cell division control protein 48 homolog D|
           (AtCDC48d) (Transitional endoplasmic reticulum ATPase D)
          Length = 815

 Score = 36.2 bits (82), Expect = 0.022
 Identities = 15/16 (93%), Positives = 15/16 (93%)
 Frame = -3

Query: 285 QQSRGFGSEFRFPDQP 238
           QQSRGFGSEFRFPD P
Sbjct: 766 QQSRGFGSEFRFPDAP 781

>CDC48_SOYBN (P54774) Cell division cycle protein 48 homolog (Valosin-containing|
           protein homolog) (VCP)
          Length = 807

 Score = 32.3 bits (72), Expect = 0.32
 Identities = 13/14 (92%), Positives = 14/14 (100%)
 Frame = -3

Query: 285 QQSRGFGSEFRFPD 244
           QQSRGFGSEFRFP+
Sbjct: 768 QQSRGFGSEFRFPE 781

>CDC48_CAPAN (Q96372) Cell division cycle protein 48 homolog|
          Length = 805

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = -3

Query: 285 QQSRGFGSEFRFPD 244
           QQSRGFG+EFRF D
Sbjct: 766 QQSRGFGTEFRFAD 779

>CD48E_ARATH (Q9LZF6) Cell division control protein 48 homolog E (AtCDC48e)|
           (Transitional endoplasmic reticulum ATPase E)
          Length = 810

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = -3

Query: 285 QQSRGFGSEFRF 250
           QQSRGFGSEFRF
Sbjct: 767 QQSRGFGSEFRF 778

>CD48A_ARATH (P54609) Cell division control protein 48 homolog A (AtCDC48a)|
          Length = 809

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = -3

Query: 285 QQSRGFGSEFRF 250
           QQSRGFGSEFRF
Sbjct: 767 QQSRGFGSEFRF 778

>TERA2_CAEEL (P54812) Transitional endoplasmic reticulum ATPase homolog 2|
           (p97/CDC48 homolog 2)
          Length = 810

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -3

Query: 285 QQSRGFGSEFRFPDQ 241
           QQSRGFG+ F+FP +
Sbjct: 772 QQSRGFGNNFKFPGE 786

>NU5H_NYCOV (Q5DUY0) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 5)
          Length = 1849

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 9/44 (20%), Positives = 26/44 (59%)
 Frame = -2

Query: 133 LNLPVISFVYCYVLWYARHGQTMYLKLLLGCTDIRYLPVICSCI 2
           ++  ++ ++ CY++    + ++ Y+ LLL   +I YL ++ + +
Sbjct: 327 ISCSLLIYILCYIMTELLYSRSFYIDLLLRLLEIIYLDILVNSL 370

>TERA1_CAEEL (P54811) Transitional endoplasmic reticulum ATPase homolog 1|
           (p97/CDC48 homolog 1)
          Length = 809

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -3

Query: 285 QQSRGFGSEFRFPDQ 241
           QQSRGFG+ F+FP +
Sbjct: 774 QQSRGFGNNFKFPGE 788


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,444,614
Number of Sequences: 219361
Number of extensions: 446681
Number of successful extensions: 641
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 80,573,946
effective HSP length: 71
effective length of database: 64,999,315
effective search space used: 1559983560
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)