ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl29h09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CRI4_MAIZE (O24585) Putative receptor protein kinase CRINKLY4 pr... 42 3e-04
2EXG_KLULA (Q12628) Glucan 1,3-beta-glucosidase precursor (EC 3.2... 29 3.0
3CLC14_MOUSE (Q8VCP9) C-type lectin domain family 14 member A pre... 29 3.0
4UPPS_SULTO (Q976K2) Undecaprenyl pyrophosphate synthetase (EC 2.... 29 3.0
5PEPA4_RABIT (P28713) Pepsin II-4 precursor (EC 3.4.23.1) (Pepsin A) 28 4.0
6PEPA2_RABIT (P27821) Pepsin II-2/3 precursor (EC 3.4.23.1) (Peps... 28 4.0
7SYI_HAEDU (Q7VP34) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isole... 28 4.0
8RTEL1_HUMAN (Q9NZ71) Regulator of telomere elongation helicase 1... 28 4.0
9PEPA1_RABIT (P28712) Pepsin II-1 precursor (EC 3.4.23.1) (Pepsin A) 28 5.2
10NHR41_CAEEL (Q9N4B8) Nuclear hormone receptor family member nhr-41 28 6.8
11GLY1_ASHGO (O74267) Threonine aldolase (EC 4.1.2.5) 27 8.9
12NU153_RAT (P49791) Nuclear pore complex protein Nup153 (Nucleopo... 27 8.9
13BIOA_CORGL (P46395) Adenosylmethionine-8-amino-7-oxononanoate am... 27 8.9

>CRI4_MAIZE (O24585) Putative receptor protein kinase CRINKLY4 precursor (EC|
           2.7.11.1)
          Length = 901

 Score = 42.0 bits (97), Expect = 3e-04
 Identities = 18/19 (94%), Positives = 18/19 (94%)
 Frame = -1

Query: 409 EEEIGPASPQENLYLQHNF 353
           EEEI PASPQENLYLQHNF
Sbjct: 883 EEEIAPASPQENLYLQHNF 901



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>EXG_KLULA (Q12628) Glucan 1,3-beta-glucosidase precursor (EC 3.2.1.58)|
           (Exo-1,3-beta-glucanase)
          Length = 429

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +2

Query: 26  EKMLNTVDENIMLICRETNNRKTTTHLHVSASYRTGLINC 145
           E++  T+DE+I ++C +     T  H +V   +   L +C
Sbjct: 285 EEVGRTIDEHISVVCEQGKETLTEAHWNVVGEWSAALTDC 324



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>CLC14_MOUSE (Q8VCP9) C-type lectin domain family 14 member A precursor|
          Length = 459

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -2

Query: 132 PVL*LADTCKCVVVFLLLVSLQISIIFSSTVLSIFSLC 19
           PV    DT   VV  L+ +++ + ++ + TVL +F LC
Sbjct: 376 PVSLTFDTSSTVVFILVSIAVIVLVVLTITVLGLFKLC 413



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>UPPS_SULTO (Q976K2) Undecaprenyl pyrophosphate synthetase (EC 2.5.1.31) (UPP|
           synthetase) (Di-trans,poly-cis-decaprenylcistransferase)
           (Undecaprenyl diphosphate synthase) (UDS)
          Length = 262

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = -2

Query: 339 RSAENMETVCRF--KFRLCDLLLWPFRREDLAI*STYWKDF*HLEAFLCRLIRS 184
           +  E+++ V R   + R+ + LLW     +L    TYW DF  ++  L R IRS
Sbjct: 201 KELEDIDLVIRSSGEIRISNFLLWHIAYSELFFVDTYWPDFRKID--LWRAIRS 252



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>PEPA4_RABIT (P28713) Pepsin II-4 precursor (EC 3.4.23.1) (Pepsin A)|
          Length = 387

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 11/118 (9%)
 Frame = +2

Query: 14  TPQSEKMLNT--VDENIMLICRETNNRKTTTHLH--VSASYRTGLINCGHSTYKYKWQL* 181
           TP  + M N   V +++  +   +++ K +  +   + +SY TG +N    +Y+  WQ+ 
Sbjct: 195 TPVFDNMWNEGLVSQDLFSVYLSSDDEKGSLVMFGGIDSSYYTGSLNWVPVSYEGYWQIT 254

Query: 182 DDRINLQRNASRC*KSFQYV-------LYIARSSLRNGQSNRSQSLNLKRQTVSMFSA 334
            D +++      C  S Q +       L    S++ N QS    S NL  + V   SA
Sbjct: 255 MDSVSINGETIACADSCQAIVDTGTSLLTGPTSAISNIQSYIGASKNLLGENVISCSA 312



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>PEPA2_RABIT (P27821) Pepsin II-2/3 precursor (EC 3.4.23.1) (Pepsin A)|
          Length = 387

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 11/118 (9%)
 Frame = +2

Query: 14  TPQSEKMLNT--VDENIMLICRETNNRKTTTHLH--VSASYRTGLINCGHSTYKYKWQL* 181
           TP  + M N   V +++  +   +++ K +  +   + +SY TG +N    +Y+  WQ+ 
Sbjct: 195 TPVFDNMWNEGLVSQDLFSVYLSSDDEKGSLVMFGGIDSSYYTGSLNWVPVSYEGYWQIT 254

Query: 182 DDRINLQRNASRC*KSFQYV-------LYIARSSLRNGQSNRSQSLNLKRQTVSMFSA 334
            D +++      C  S Q +       L    S++ N QS    S NL  + V   SA
Sbjct: 255 MDSVSINGETIACADSCQAIVDTGTSLLTGPTSAISNIQSYIGASKNLLGENVISCSA 312



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>SYI_HAEDU (Q7VP34) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 935

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 38  NTVDENIMLICRETNNRKTTTHLHVSASYRTGLINCGHSTYK 163
           N  D+N+    R+T+  K T  LH    Y  G ++ GH+  K
Sbjct: 31  NWYDKNLYQQIRQTSKGKKTFILHDGPPYANGNLHLGHAVNK 72



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>RTEL1_HUMAN (Q9NZ71) Regulator of telomere elongation helicase 1 (EC 3.6.1.-)|
           (Helicase-like protein NHL)
          Length = 1400

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = -2

Query: 219 HLEAFLCRLIRSSYNCHLYL*VE----WPQLMSPVL*LADTCK 103
           HL+  LCR   +S +CH Y  VE      +L SP+L + D  K
Sbjct: 157 HLQIHLCRKKVASRSCHFYNNVEEKSLEQELASPILDIEDLVK 199



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>PEPA1_RABIT (P28712) Pepsin II-1 precursor (EC 3.4.23.1) (Pepsin A)|
          Length = 387

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
 Frame = +2

Query: 14  TPQSEKMLNT--VDENIMLICRETNNRKTTTHLH--VSASYRTGLINCGHSTYKYKWQL* 181
           TP  + M N   V E++  +   +N  K +  +   + +SY TG +N    +++  WQ+ 
Sbjct: 195 TPVFDNMWNEGLVSEDLFSVYLSSNGEKGSMVMFGGIDSSYYTGSLNWVPVSHEGYWQIT 254

Query: 182 DDRINLQRNASRC*KSFQYVLYIARSSL 265
            D I +      C  S Q V+    S L
Sbjct: 255 MDSITINGETIACADSCQAVVDTGTSLL 282



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>NHR41_CAEEL (Q9N4B8) Nuclear hormone receptor family member nhr-41|
          Length = 615

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 53  NIMLICRETNNRKTTTHLHVSASYRTGLINCGHST 157
           N  ++C   NN++ TT  H+S +    L+   H T
Sbjct: 231 NSSMLCNNDNNQQNTTPEHLSPNLLLSLVKLEHET 265



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>GLY1_ASHGO (O74267) Threonine aldolase (EC 4.1.2.5)|
          Length = 382

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 99  HTYTYLRATEQD-SSTVAIPLINTSGNYRTTESIYKEMPPD 218
           H YT+  A     S  +  P+I ++GNY T E I K   PD
Sbjct: 98  HVYTHEAAGLAILSQAMVTPVIPSNGNYLTLEDIKKHYIPD 138



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>NU153_RAT (P49791) Nuclear pore complex protein Nup153 (Nucleoporin Nup153)|
           (153 kDa nucleoporin)
          Length = 1468

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 372 CTCSTTSDEMPRSAENME 319
           C+CS  +DE+PR  EN E
Sbjct: 67  CSCSVNADEVPRWPENRE 84



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>BIOA_CORGL (P46395) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase|
           (EC 2.6.1.62) (7,8-diamino-pelargonic acid
           aminotransferase) (DAPA aminotransferase)
          Length = 423

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
 Frame = +1

Query: 91  DNYTLTRICELQNRTHQLWPFHL*IQV-----AIIGRPNQSTKKCLQMLKILPVRTLYS* 255
           D +T   +C+ +N  H LW   L  Q+      + G   Q+  + L+ +++L   T+ + 
Sbjct: 147 DTFTAMSVCDPENGMHSLWKGTLPEQIFAPAPPVRGSSPQAISEYLRSMELLIDETVSAI 206

Query: 256 ILSP 267
           I+ P
Sbjct: 207 IIEP 210


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,021,284
Number of Sequences: 219361
Number of extensions: 1207711
Number of successful extensions: 3064
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3064
length of database: 80,573,946
effective HSP length: 111
effective length of database: 56,224,875
effective search space used: 1349397000
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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