Clone Name | rbastl29h09 |
---|---|
Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 87.7 bits (44), Expect = 3e-14 Identities = 74/84 (88%) Strand = Plus / Minus Query: 326 ttttcagctgatcttggcatttcatcagaagttgtgctgcaagtacaggttctcctgtgg 385 |||||| ||| ||||| |||||||||||||||||||||||||||||||||| ||||| || Sbjct: 24307141 ttttcaactgttcttgacatttcatcagaagttgtgctgcaagtacaggttttcctgcgg 24307082 Query: 386 agacgccggcccaatctcttcctc 409 || ||||| | ||| |||||||| Sbjct: 24307081 tgaggccgggctaatttcttcctc 24307058 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 194 aatctacaaagaaatgcctccagatgctaaaaatccttccagt 236 ||||||||||||||||||||| | |||||||| | |||||||| Sbjct: 24307331 aatctacaaagaaatgcctccggctgctaaaatttcttccagt 24307289
>gb|AC120505.7| Oryza sativa chromosome 3 BAC OSJNBa0066H15 genomic sequence, complete sequence Length = 171664 Score = 87.7 bits (44), Expect = 3e-14 Identities = 74/84 (88%) Strand = Plus / Plus Query: 326 ttttcagctgatcttggcatttcatcagaagttgtgctgcaagtacaggttctcctgtgg 385 |||||| ||| ||||| |||||||||||||||||||||||||||||||||| ||||| || Sbjct: 73483 ttttcaactgttcttgacatttcatcagaagttgtgctgcaagtacaggttttcctgcgg 73542 Query: 386 agacgccggcccaatctcttcctc 409 || ||||| | ||| |||||||| Sbjct: 73543 tgaggccgggctaatttcttcctc 73566 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 194 aatctacaaagaaatgcctccagatgctaaaaatccttccagt 236 ||||||||||||||||||||| | |||||||| | |||||||| Sbjct: 73293 aatctacaaagaaatgcctccggctgctaaaatttcttccagt 73335
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 87.7 bits (44), Expect = 3e-14 Identities = 74/84 (88%) Strand = Plus / Minus Query: 326 ttttcagctgatcttggcatttcatcagaagttgtgctgcaagtacaggttctcctgtgg 385 |||||| ||| ||||| |||||||||||||||||||||||||||||||||| ||||| || Sbjct: 24224610 ttttcaactgttcttgacatttcatcagaagttgtgctgcaagtacaggttttcctgcgg 24224551 Query: 386 agacgccggcccaatctcttcctc 409 || ||||| | ||| |||||||| Sbjct: 24224550 tgaggccgggctaatttcttcctc 24224527 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 194 aatctacaaagaaatgcctccagatgctaaaaatccttccagt 236 ||||||||||||||||||||| | |||||||| | |||||||| Sbjct: 24224800 aatctacaaagaaatgcctccggctgctaaaatttcttccagt 24224758
>dbj|AK101339.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033034J17, full insert sequence Length = 3772 Score = 87.7 bits (44), Expect = 3e-14 Identities = 74/84 (88%) Strand = Plus / Minus Query: 326 ttttcagctgatcttggcatttcatcagaagttgtgctgcaagtacaggttctcctgtgg 385 |||||| ||| ||||| |||||||||||||||||||||||||||||||||| ||||| || Sbjct: 3406 ttttcaactgttcttgacatttcatcagaagttgtgctgcaagtacaggttttcctgcgg 3347 Query: 386 agacgccggcccaatctcttcctc 409 || ||||| | ||| |||||||| Sbjct: 3346 tgaggccgggctaatttcttcctc 3323 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 194 aatctacaaagaaatgcctccagatgctaaaaatccttccagt 236 ||||||||||||||||||||| | |||||||| | |||||||| Sbjct: 3596 aatctacaaagaaatgcctccggctgctaaaatttcttccagt 3554
>dbj|AB057787.1| Oryza sativa OsCR4 gene, complete cds Length = 3859 Score = 87.7 bits (44), Expect = 3e-14 Identities = 74/84 (88%) Strand = Plus / Minus Query: 326 ttttcagctgatcttggcatttcatcagaagttgtgctgcaagtacaggttctcctgtgg 385 |||||| ||| ||||| |||||||||||||||||||||||||||||||||| ||||| || Sbjct: 3534 ttttcaactgttcttgacatttcatcagaagttgtgctgcaagtacaggttttcctgcgg 3475 Query: 386 agacgccggcccaatctcttcctc 409 || ||||| | ||| |||||||| Sbjct: 3474 tgaggccgggctaatttcttcctc 3451 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 194 aatctacaaagaaatgcctccagatgctaaaaatccttccagt 236 ||||||||||||||||||||| | |||||||| | |||||||| Sbjct: 3724 aatctacaaagaaatgcctccggctgctaaaatttcttccagt 3682
>gb|AY110360.1| Zea mays CL2011_1 mRNA sequence Length = 3324 Score = 67.9 bits (34), Expect = 2e-08 Identities = 40/42 (95%) Strand = Plus / Minus Query: 344 atttcatcagaagttgtgctgcaagtacaggttctcctgtgg 385 ||||| |||||||||||||||||||||||||||||| ||||| Sbjct: 2868 atttcttcagaagttgtgctgcaagtacaggttctcttgtgg 2827
>gb|U67422.1|ZMU67422 Zea mays CRINKLY4 precursor (cr4) mRNA, complete cds Length = 3346 Score = 67.9 bits (34), Expect = 2e-08 Identities = 40/42 (95%) Strand = Plus / Minus Query: 344 atttcatcagaagttgtgctgcaagtacaggttctcctgtgg 385 ||||| |||||||||||||||||||||||||||||| ||||| Sbjct: 2868 atttcttcagaagttgtgctgcaagtacaggttctcttgtgg 2827
>ref|XM_468998.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2706 Score = 63.9 bits (32), Expect = 4e-07 Identities = 53/60 (88%) Strand = Plus / Minus Query: 350 tcagaagttgtgctgcaagtacaggttctcctgtggagacgccggcccaatctcttcctc 409 ||||||||||||||||||||||||||| ||||| || || ||||| | ||| |||||||| Sbjct: 2706 tcagaagttgtgctgcaagtacaggttttcctgcggtgaggccgggctaatttcttcctc 2647
>gb|AY484589.1| Musa acuminata clone MuH9, genomic sequence Length = 82723 Score = 56.0 bits (28), Expect = 9e-05 Identities = 52/60 (86%) Strand = Plus / Plus Query: 350 tcagaagttgtgctgcaagtacaggttctcctgtggagacgccggcccaatctcttcctc 409 |||||||||||| |||||| |||| ||||||||||| || || || || ||||||||||| Sbjct: 38972 tcagaagttgtgttgcaagaacagattctcctgtggggatgctggtccgatctcttcctc 39031
>gb|AC010623.10| Homo sapiens chromosome 5 clone CTD-2093G19, complete sequence Length = 122505 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 343 catttcatcagaagttgtgctg 364 |||||||||||||||||||||| Sbjct: 43055 catttcatcagaagttgtgctg 43076
>gb|AC009393.5| Drosophila melanogaster clone BACR17F05, complete sequence Length = 198037 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 67 ttgcagggaaaccaacaacagaaag 91 |||||||| |||||||||||||||| Sbjct: 22317 ttgcagggcaaccaacaacagaaag 22341
>gb|AC018479.2|AC018479 Drosophila melanogaster, chromosome 3R, region 87D-87D, BAC clone BACR09O13, complete sequence Length = 174677 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 67 ttgcagggaaaccaacaacagaaag 91 |||||||| |||||||||||||||| Sbjct: 151921 ttgcagggcaaccaacaacagaaag 151945
>gb|AE003697.4| Drosophila melanogaster chromosome 3R, section 35 of 118 of the complete sequence Length = 221239 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 67 ttgcagggaaaccaacaacagaaag 91 |||||||| |||||||||||||||| Sbjct: 163610 ttgcagggcaaccaacaacagaaag 163634
>ref|NM_112562.3| Arabidopsis thaliana unknown protein AT3G16860 mRNA, complete cds Length = 2361 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 352 agaagttgtgctgcaagtac 371 |||||||||||||||||||| Sbjct: 1475 agaagttgtgctgcaagtac 1456
>emb|AJ781197.1| Influenza B virus (B/Hong Kong/330/01) partial PB2 gene for polymerase 2, genomic RNA, isolate B/Hong Kong/330/01 Length = 2319 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 caaagaaatgcctccagatg 219 |||||||||||||||||||| Sbjct: 468 caaagaaatgcctccagatg 487
>emb|AJ781196.1| Influenza B virus (B/Trieste/28/02) partial PB2 gene for polymerase 2, genomic RNA, isolate B/Trieste/28/02 Length = 2298 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 caaagaaatgcctccagatg 219 |||||||||||||||||||| Sbjct: 447 caaagaaatgcctccagatg 466
>emb|AJ781192.1| Influenza B virus (B/Sichuan/379/99) partial PB2 gene for polymerase 2, genomic RNA, isolate B/Sichuan/379/99 Length = 2319 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 caaagaaatgcctccagatg 219 |||||||||||||||||||| Sbjct: 468 caaagaaatgcctccagatg 487
>emb|Z75889.1|HS267P19 Human DNA sequence from clone RP1-267P19 on chromosome 13 Contains part of the gene for androgen-induced prostate proliferative shutoff associated protein (AS3) (CG008, FLJ23236, KIAA0979) and two CpG islands, complete sequence Length = 113704 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 caacaacagaaagacaacta 98 |||||||||||||||||||| Sbjct: 91568 caacaacagaaagacaacta 91549
>emb|AL049861.18|HSBK21C21 Human DNA sequence from clone CTA-21C21 on chromosome 1p22.2-31.1 Contains STSs and GSSs, complete sequence Length = 143163 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 attccacttataaatacaag 169 |||||||||||||||||||| Sbjct: 65126 attccacttataaatacaag 65107
>gb|AC161258.2| Mus musculus BAC clone RP23-457H24 from chromosome 17, complete sequence Length = 201842 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 tacaaagaaatgcctccaga 217 |||||||||||||||||||| Sbjct: 100627 tacaaagaaatgcctccaga 100608
>gb|AC104819.4| Homo sapiens BAC clone RP11-731D1 from 4, complete sequence Length = 129203 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 274 ccaaagcaacaggtcacaaa 293 |||||||||||||||||||| Sbjct: 93753 ccaaagcaacaggtcacaaa 93772
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 atcaatctacaaagaaatgc 210 |||||||||||||||||||| Sbjct: 26177782 atcaatctacaaagaaatgc 26177763
>emb|BX823830.1|CNS0A7F9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS80ZD01 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2270 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 352 agaagttgtgctgcaagtac 371 |||||||||||||||||||| Sbjct: 1474 agaagttgtgctgcaagtac 1455
>gb|AC068196.4| Homo sapiens BAC clone RP11-685J19 from 2, complete sequence Length = 162566 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 201 aaagaaatgcctccagatgctaaaaatc 228 |||||||||||||| |||| |||||||| Sbjct: 115825 aaagaaatgcctcctgatgttaaaaatc 115852
>dbj|AP004868.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0048B08 Length = 146874 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 atcaatctacaaagaaatgc 210 |||||||||||||||||||| Sbjct: 74609 atcaatctacaaagaaatgc 74590
>dbj|AP007203.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0012J10 Length = 132375 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 atcaatctacaaagaaatgc 210 |||||||||||||||||||| Sbjct: 623 atcaatctacaaagaaatgc 604
>gb|AY504607.1| Influenza B virus (B/Hong Kong/330/2001) basic polymerase subunit 2 (PB2) gene, complete cds Length = 2396 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 caaagaaatgcctccagatg 219 |||||||||||||||||||| Sbjct: 482 caaagaaatgcctccagatg 501
>gb|AY377788.1| Leishmania donovani promastigote IFN-gamma release-inducing antigen, complete sequence Length = 1953 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 71 agggaaaccaacaacagaaagaca 94 ||||||| |||||||||||||||| Sbjct: 1295 agggaaaacaacaacagaaagaca 1318
>gb|AY504615.1| Influenza B virus (B/Hong Kong/330/2001 egg adapted) basic polymerase subunit 2 (PB2) gene, complete cds Length = 2396 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 caaagaaatgcctccagatg 219 |||||||||||||||||||| Sbjct: 482 caaagaaatgcctccagatg 501
>dbj|AP001308.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MUH15 Length = 11291 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 352 agaagttgtgctgcaagtac 371 |||||||||||||||||||| Sbjct: 3352 agaagttgtgctgcaagtac 3371
>emb|Y14424.1|ATSEB2 Arabidopsis thaliana mRNA for hypothetical protein SEB2, partial Length = 1244 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 352 agaagttgtgctgcaagtac 371 |||||||||||||||||||| Sbjct: 382 agaagttgtgctgcaagtac 363
>emb|AL353724.11| Human DNA sequence from clone RP11-448I13 on chromosome 13, complete sequence Length = 120652 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 caacaacagaaagacaacta 98 |||||||||||||||||||| Sbjct: 110707 caacaacagaaagacaacta 110688
>emb|AL731706.14| Mouse DNA sequence from clone RP23-199B10 on chromosome 2, complete sequence Length = 195301 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 atcaactgtggccattccac 156 |||||||||||||||||||| Sbjct: 146227 atcaactgtggccattccac 146208
>gb|AC102860.13| Mus musculus chromosome 3, clone RP24-511H12, complete sequence Length = 202315 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 352 agaagttgtgctgcaagtacaggt 375 ||||||||||||| |||||||||| Sbjct: 72030 agaagttgtgctgaaagtacaggt 72053 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,643,545 Number of Sequences: 3902068 Number of extensions: 3643545 Number of successful extensions: 68193 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68076 Number of HSP's gapped (non-prelim): 117 length of query: 409 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 387 effective length of database: 17,147,199,772 effective search space: 6635966311764 effective search space used: 6635966311764 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)