ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl29h08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_187916.1| Oryza sativa (japonica cultivar-group), Ozsa835... 66 1e-07
2dbj|AP000570.1| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
4dbj|AK111789.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 1e-07
5dbj|AK100311.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 1e-07
6gb|AC114786.4| Homo sapiens BAC clone RP11-618I10 from 4, comple... 44 0.41
7ref|XM_980774.1| PREDICTED: Mus musculus protein tyrosine phosph... 42 1.6
8ref|XM_485383.4| PREDICTED: Mus musculus protein tyrosine phosph... 42 1.6
9ref|XM_921203.2| PREDICTED: Mus musculus protein tyrosine phosph... 42 1.6
10gb|AE014075.1| Escherichia coli CFT073, complete genome 42 1.6
11gb|CP000243.1| Escherichia coli UTI89, complete genome 42 1.6
12dbj|AK035295.1| Mus musculus adult male urinary bladder cDNA, RI... 42 1.6
13emb|AL805921.7| Mouse DNA sequence from clone RP23-293N9 on chro... 42 1.6
14emb|AL713854.9| Mouse DNA sequence from clone RP23-477E1 on chro... 42 1.6
15gb|AC121514.14| Mus musculus chromosome 8, clone RP24-394H9, com... 40 6.3
16emb|AL049595.5|HSJ501M23 Human DNA sequence from clone RP3-501M2... 40 6.3
17gb|AC158295.5| Mus musculus chromosome 8, clone RP24-208G23, com... 40 6.3
18gb|U23521.1| Caenorhabditis elegans cosmid F41C3, complete sequence 40 6.3
19emb|AL133279.7|CNS01DUM Human chromosome 14 DNA sequence BAC R-7... 40 6.3
20gb|AC125066.5| Mus musculus BAC clone RP23-430N17 from 16, compl... 40 6.3 
>ref|NM_187916.1| Oryza sativa (japonica cultivar-group), Ozsa8358 predicted mRNA
          Length = 3594

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 33/33 (100%)
 Strand = Plus / Minus

                                             
Query: 436  tcaccaaactgaatgccagtaggaggatgcatg 468
            |||||||||||||||||||||||||||||||||
Sbjct: 3554 tcaccaaactgaatgccagtaggaggatgcatg 3522
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>dbj|AP000570.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              clone:P0711E10
          Length = 157903

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                               
Query: 436    tcaccaaactgaatgccagtaggaggatgcatg 468
              |||||||||||||||||||||||||||||||||
Sbjct: 135201 tcaccaaactgaatgccagtaggaggatgcatg 135233
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                                
Query: 436     tcaccaaactgaatgccagtaggaggatgcatg 468
               |||||||||||||||||||||||||||||||||
Sbjct: 8560048 tcaccaaactgaatgccagtaggaggatgcatg 8560080
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>dbj|AK111789.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023092H03, full
            insert sequence
          Length = 1817

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 33/33 (100%)
 Strand = Plus / Minus

                                             
Query: 436  tcaccaaactgaatgccagtaggaggatgcatg 468
            |||||||||||||||||||||||||||||||||
Sbjct: 1575 tcaccaaactgaatgccagtaggaggatgcatg 1543
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>dbj|AK100311.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023078K23, full
            insert sequence
          Length = 3500

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 33/33 (100%)
 Strand = Plus / Minus

                                             
Query: 436  tcaccaaactgaatgccagtaggaggatgcatg 468
            |||||||||||||||||||||||||||||||||
Sbjct: 3077 tcaccaaactgaatgccagtaggaggatgcatg 3045
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>gb|AC114786.4| Homo sapiens BAC clone RP11-618I10 from 4, complete sequence
          Length = 148977

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 195  aataaagttaaaatcagttaag 216
            ||||||||||||||||||||||
Sbjct: 4813 aataaagttaaaatcagttaag 4792
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>ref|XM_980774.1| PREDICTED: Mus musculus protein tyrosine phosphatase, non-receptor
            type 3 (Ptpn3), mRNA
          Length = 6723

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 394  aactaggctctgcataaggct 414
            |||||||||||||||||||||
Sbjct: 3959 aactaggctctgcataaggct 3979
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>ref|XM_485383.4| PREDICTED: Mus musculus protein tyrosine phosphatase, non-receptor
            type 3, transcript variant 1 (Ptpn3), mRNA
          Length = 6723

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 394  aactaggctctgcataaggct 414
            |||||||||||||||||||||
Sbjct: 3959 aactaggctctgcataaggct 3979
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>ref|XM_921203.2| PREDICTED: Mus musculus protein tyrosine phosphatase, non-receptor
            type 3, transcript variant 6 (Ptpn3), mRNA
          Length = 6284

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 394  aactaggctctgcataaggct 414
            |||||||||||||||||||||
Sbjct: 3520 aactaggctctgcataaggct 3540
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>gb|AE014075.1| Escherichia coli CFT073, complete genome
          Length = 5231428

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 409     aaggctttgcgcagctccgtt 429
               |||||||||||||||||||||
Sbjct: 2034302 aaggctttgcgcagctccgtt 2034282
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>gb|CP000243.1| Escherichia coli UTI89, complete genome
          Length = 5065741

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 409     aaggctttgcgcagctccgtt 429
               |||||||||||||||||||||
Sbjct: 1909320 aaggctttgcgcagctccgtt 1909300
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>dbj|AK035295.1| Mus musculus adult male urinary bladder cDNA, RIKEN full-length
            enriched library, clone:9530011I20
            product:unclassifiable, full insert sequence
          Length = 2414

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 394  aactaggctctgcataaggct 414
            |||||||||||||||||||||
Sbjct: 1781 aactaggctctgcataaggct 1801
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>emb|AL805921.7| Mouse DNA sequence from clone RP23-293N9 on chromosome 4, complete
             sequence
          Length = 162090

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 394   aactaggctctgcataaggct 414
             |||||||||||||||||||||
Sbjct: 53805 aactaggctctgcataaggct 53785
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>emb|AL713854.9| Mouse DNA sequence from clone RP23-477E1 on chromosome 8, complete
             sequence
          Length = 169876

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 96    ccaaaccaacatctgaccttctgaa 120
             |||||||||| ||||||||||||||
Sbjct: 73408 ccaaaccaacttctgaccttctgaa 73432
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>gb|AC121514.14| Mus musculus chromosome 8, clone RP24-394H9, complete sequence
          Length = 168316

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 200   agttaaaatcagttaagctgaaac 223
             ||||||||||| ||||||||||||
Sbjct: 56968 agttaaaatcaattaagctgaaac 56945
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>emb|AL049595.5|HSJ501M23 Human DNA sequence from clone RP3-501M23 on chromosome 6q13-14.3,
             complete sequence
          Length = 76782

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 291   cacttgagatggcactcgta 310
             ||||||||||||||||||||
Sbjct: 70808 cacttgagatggcactcgta 70789
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>gb|AC158295.5| Mus musculus chromosome 8, clone RP24-208G23, complete sequence
          Length = 167209

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 200   agttaaaatcagttaagctgaaac 223
             ||||||||||| ||||||||||||
Sbjct: 84366 agttaaaatcaattaagctgaaac 84389
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>gb|U23521.1| Caenorhabditis elegans cosmid F41C3, complete sequence
          Length = 38897

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 57    gcaagattacttcaattcaa 76
             ||||||||||||||||||||
Sbjct: 34868 gcaagattacttcaattcaa 34849
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>emb|AL133279.7|CNS01DUM Human chromosome 14 DNA sequence BAC R-753D20 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 197224

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 324   ttaccaaaagatcacagcac 343
             ||||||||||||||||||||
Sbjct: 85382 ttaccaaaagatcacagcac 85363
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>gb|AC125066.5| Mus musculus BAC clone RP23-430N17 from 16, complete sequence
          Length = 197813

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 191   tgagaataaagttaaaatca 210
             ||||||||||||||||||||
Sbjct: 15682 tgagaataaagttaaaatca 15701


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,465,716
Number of Sequences: 3902068
Number of extensions: 3465716
Number of successful extensions: 56776
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56712
Number of HSP's gapped (non-prelim): 64
length of query: 469
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 447
effective length of database: 17,147,199,772
effective search space: 7664798298084
effective search space used: 7664798298084
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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