ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl29h07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK042325.1| Mus musculus 3 days neonate thymus cDNA, RIKEN f... 42 1.5
2emb|AL831735.10| Mouse DNA sequence from clone RP23-452D3 on chr... 42 1.5
3ref|NM_184576.1| Oryza sativa (japonica cultivar-group), predic... 40 6.1
4gb|AC022419.7| Homo sapiens chromosome 5 clone CTD-2026L11, comp... 40 6.1
5gb|AC090489.8| Genomic sequence for Mus musculus, clone RP23-104... 40 6.1
6dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
7dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
8dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
9gb|AC026797.3|AC026797 Homo sapiens chromosome 5 clone CTD-2299N... 40 6.1
10dbj|AP005185.4| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
11dbj|AP005709.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
12dbj|AP006237.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
13dbj|AP005860.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
14gb|AC135859.4| Mus musculus BAC clone RP24-151D9 from 10, comple... 40 6.1

>dbj|AK042325.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched
           library, clone:A630082H19 product:ubiquitin conjugating
           enzyme 7 interacting protein 3, full insert sequence
          Length = 1536

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 159 caggtccagggacaggcacct 179
           |||||||||||||||||||||
Sbjct: 217 caggtccagggacaggcacct 237



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>emb|AL831735.10| Mouse DNA sequence from clone RP23-452D3 on chromosome 2, complete
              sequence
          Length = 193718

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 159    caggtccagggacaggcacct 179
              |||||||||||||||||||||
Sbjct: 190055 caggtccagggacaggcacct 190035



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>ref|NM_184576.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 270

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 365 ctgctcggctgcaggctgct 384
           ||||||||||||||||||||
Sbjct: 100 ctgctcggctgcaggctgct 119



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>gb|AC022419.7| Homo sapiens chromosome 5 clone CTD-2026L11, complete sequence
          Length = 104351

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 384   tcccaggcacctccctcactggcc 407
             |||||||| |||||||||||||||
Sbjct: 23551 tcccaggctcctccctcactggcc 23574



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>gb|AC090489.8| Genomic sequence for Mus musculus, clone RP23-104O10, complete
           sequence
          Length = 207424

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 373 ctgcaggctgctcccaggca 392
           ||||||||||||||||||||
Sbjct: 413 ctgcaggctgctcccaggca 432



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9,
              complete sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 365    ctgctcggctgcaggctgct 384
              ||||||||||||||||||||
Sbjct: 990635 ctgctcggctgcaggctgct 990616



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 268      ccaccgacaccgcgaaaaac 287
                ||||||||||||||||||||
Sbjct: 19440316 ccaccgacaccgcgaaaaac 19440297



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 365      ctgctcggctgcaggctgct 384
                ||||||||||||||||||||
Sbjct: 16297083 ctgctcggctgcaggctgct 16297102



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>gb|AC026797.3|AC026797 Homo sapiens chromosome 5 clone CTD-2299N12, complete sequence
          Length = 172043

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 384    tcccaggcacctccctcactggcc 407
              |||||||| |||||||||||||||
Sbjct: 131154 tcccaggctcctccctcactggcc 131131



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>dbj|AP005185.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0409B11
          Length = 168354

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 268    ccaccgacaccgcgaaaaac 287
              ||||||||||||||||||||
Sbjct: 129854 ccaccgacaccgcgaaaaac 129835



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>dbj|AP005709.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0646B04
          Length = 178896

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 365    ctgctcggctgcaggctgct 384
              ||||||||||||||||||||
Sbjct: 154762 ctgctcggctgcaggctgct 154743



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>dbj|AP006237.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBb0008D07
          Length = 156874

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 365   ctgctcggctgcaggctgct 384
             ||||||||||||||||||||
Sbjct: 59160 ctgctcggctgcaggctgct 59179



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>dbj|AP005860.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1134_E08
          Length = 153002

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 365   ctgctcggctgcaggctgct 384
             ||||||||||||||||||||
Sbjct: 28328 ctgctcggctgcaggctgct 28309



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>gb|AC135859.4| Mus musculus BAC clone RP24-151D9 from 10, complete sequence
          Length = 182809

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 373   ctgcaggctgctcccaggca 392
             ||||||||||||||||||||
Sbjct: 56788 ctgcaggctgctcccaggca 56769


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,773,474
Number of Sequences: 3902068
Number of extensions: 3773474
Number of successful extensions: 81982
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81916
Number of HSP's gapped (non-prelim): 66
length of query: 453
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 431
effective length of database: 17,147,199,772
effective search space: 7390443101732
effective search space used: 7390443101732
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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