ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl29h02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK101026.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.007
2dbj|AK058804.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.007
3gb|AC132349.3| Mus musculus BAC clone RP24-82B7 from chromosome ... 42 1.6
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
5dbj|AP003768.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
6dbj|AP003376.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
7gb|AC166836.3| Mus musculus BAC clone RP23-17O23 from chromosome... 40 6.4
8emb|CR619042.1| full-length cDNA clone CS0DF028YK11 of Fetal bra... 40 6.4
9emb|AL121750.22|HSJ323A24 Human DNA sequence from clone RP3-323A... 40 6.4
10gb|AC009260.13| Homo sapiens 12 BAC RP11-435A10 (Roswell Park Ca... 40 6.4
11gb|AC135862.4| Mus musculus BAC clone RP23-323B2 from chromosome... 40 6.4
12ref|XM_315682.2| Anopheles gambiae str. PEST ENSANGP00000021730 ... 40 6.4
13gb|AY104486.1| Zea mays PCO109435 mRNA sequence 40 6.4
14emb|Z68279.1|HSL247F6 Human DNA sequence from clone LA04NC01-247... 40 6.4
15ref|NM_003023.2| Homo sapiens SH3-domain binding protein 2 (SH3B... 40 6.4
16dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 40 6.4
17dbj|AB000462.1| Homo sapiens mRNA for SH3 binding protein, compl... 40 6.4 
>dbj|AK101026.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023150E15, full
            insert sequence
          Length = 3313

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 67/81 (82%)
 Strand = Plus / Minus

                                                                        
Query: 389  tggctgcccgttcttcgtcaggaaaaacctggtcagtcttgatggacccttctgcgttcg 448
            |||||||||||||||||| || || || ||||| | |||||||||  | || |||| |||
Sbjct: 3010 tggctgcccgttcttcgtgagaaagaatctggttattcttgatggcgctttatgcgctcg 2951

                                 
Query: 449  atctgctgctggttctgaagc 469
             ||||||| || |||||||||
Sbjct: 2950 ttctgctgatgtttctgaagc 2930
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>dbj|AK058804.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-003-B07, full
           insert sequence
          Length = 1284

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 67/81 (82%)
 Strand = Plus / Minus

                                                                       
Query: 389 tggctgcccgttcttcgtcaggaaaaacctggtcagtcttgatggacccttctgcgttcg 448
           |||||||||||||||||| || || || ||||| | |||||||||  | || |||| |||
Sbjct: 981 tggctgcccgttcttcgtgagaaagaatctggttattcttgatggcgctttatgcgctcg 922

                                
Query: 449 atctgctgctggttctgaagc 469
            ||||||| || |||||||||
Sbjct: 921 ttctgctgatgtttctgaagc 901
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>gb|AC132349.3| Mus musculus BAC clone RP24-82B7 from chromosome 16, complete sequence
          Length = 216783

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 375    ggcctggaagcagctggctgc 395
              |||||||||||||||||||||
Sbjct: 102456 ggcctggaagcagctggctgc 102476
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                             
Query: 389      tggctgcccgttcttcgtcaggaaaaacctggtcagtcttgatgg 433
                |||||||||||||||||| || || || ||||| | |||||||||
Sbjct: 31099615 tggctgcccgttcttcgtgagaaagaatctggttattcttgatgg 31099571
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>dbj|AP003768.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0439E07
          Length = 176486

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                           
Query: 389    tggctgcccgttcttcgtcaggaaaaacctggtcagtcttgatgg 433
              |||||||||||||||||| || || || ||||| | |||||||||
Sbjct: 156594 tggctgcccgttcttcgtgagaaagaatctggttattcttgatgg 156550
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>dbj|AP003376.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0014K08
          Length = 177263

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                          
Query: 389   tggctgcccgttcttcgtcaggaaaaacctggtcagtcttgatgg 433
             |||||||||||||||||| || || || ||||| | |||||||||
Sbjct: 25960 tggctgcccgttcttcgtgagaaagaatctggttattcttgatgg 25916
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>gb|AC166836.3| Mus musculus BAC clone RP23-17O23 from chromosome 10, complete sequence
          Length = 202804

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 190   caagacaaaaactatccaagcctc 213
             ||||||||||||| ||||||||||
Sbjct: 31013 caagacaaaaactctccaagcctc 31036
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>emb|CR619042.1| full-length cDNA clone CS0DF028YK11 of Fetal brain of Homo sapiens
           (human)
          Length = 1844

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 377 cctggaagcagctggctgcc 396
           ||||||||||||||||||||
Sbjct: 224 cctggaagcagctggctgcc 205
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>emb|AL121750.22|HSJ323A24 Human DNA sequence from clone RP3-323A24 on chromosome 4, complete
             sequence
          Length = 149969

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 377   cctggaagcagctggctgcc 396
             ||||||||||||||||||||
Sbjct: 61621 cctggaagcagctggctgcc 61640
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>gb|AC009260.13| Homo sapiens 12 BAC RP11-435A10 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 99727

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 301   cggtcggggcctggctggct 320
             ||||||||||||||||||||
Sbjct: 96424 cggtcggggcctggctggct 96405
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>gb|AC135862.4| Mus musculus BAC clone RP23-323B2 from chromosome 10, complete sequence
          Length = 203324

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 190    caagacaaaaactatccaagcctc 213
              ||||||||||||| ||||||||||
Sbjct: 203093 caagacaaaaactctccaagcctc 203116
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>ref|XM_315682.2| Anopheles gambiae str. PEST ENSANGP00000021730
           (ENSANGG00000019241), partial mRNA
          Length = 585

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 236 gcagcagcccctcgtcgtcc 255
           ||||||||||||||||||||
Sbjct: 314 gcagcagcccctcgtcgtcc 333
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>gb|AY104486.1| Zea mays PCO109435 mRNA sequence
          Length = 992

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 278 cgggggcttgatcgaagatg 297
           ||||||||||||||||||||
Sbjct: 62  cgggggcttgatcgaagatg 81
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>emb|Z68279.1|HSL247F6 Human DNA sequence from clone LA04NC01-247F6 on chromosome 4,
            complete sequence
          Length = 22970

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 377  cctggaagcagctggctgcc 396
            ||||||||||||||||||||
Sbjct: 3540 cctggaagcagctggctgcc 3559
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>ref|NM_003023.2| Homo sapiens SH3-domain binding protein 2 (SH3BP2), mRNA
          Length = 7300

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 377  cctggaagcagctggctgcc 396
            ||||||||||||||||||||
Sbjct: 3493 cctggaagcagctggctgcc 3474
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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 453     gctgctggttctgaagcgct 472
               ||||||||||||||||||||
Sbjct: 3375313 gctgctggttctgaagcgct 3375294
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>dbj|AB000462.1| Homo sapiens mRNA for SH3 binding protein, complete cds,
            clone:RES4-23A
          Length = 7300

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 377  cctggaagcagctggctgcc 396
            ||||||||||||||||||||
Sbjct: 3493 cctggaagcagctggctgcc 3474


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,951,688
Number of Sequences: 3902068
Number of extensions: 2951688
Number of successful extensions: 52762
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52708
Number of HSP's gapped (non-prelim): 54
length of query: 474
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 452
effective length of database: 17,147,199,772
effective search space: 7750534296944
effective search space used: 7750534296944
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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