>ZN646_HUMAN (O15015) Zinc finger protein 646|
          Length = 1829

 Score = 31.2 bits (69), Expect = 0.71
 Identities = 18/72 (25%), Positives = 35/72 (48%)
 Frame = +2

Query: 62  PALIPSPTVLTTSTNRKRKQPATTNNTRPMIERARPRYYIFGMSFHPPSSFRTCRXHYRR 241
           P++ P+P +L  +T+++ + P TT + RP       +    G ++    S    R  +R 
Sbjct: 436 PSVPPAPLLLAETTHKEEEDPTTTLDHRPY------KCSECGRAYRHRGSLVNHRHSHRT 489

Query: 242 GXHRPFPCPRPW 277
           G ++   CPR +
Sbjct: 490 GEYQCSLCPRKY 501

>EDG3_MOUSE (Q9Z0U9) Sphingosine 1-phosphate receptor Edg-3 (S1P receptor|
           Edg-3) (Endothelial differentiation G-protein coupled
           receptor 3) (Sphingosine 1-phosphate receptor 3) (S1P3)
           (Lysophospholipid receptor B3)
          Length = 378

 Score = 30.8 bits (68), Expect = 0.93
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
 Frame = -1

Query: 277 PRTWAREWAMLPPPIMAPTCSERRRWMERHAKDVVSRPCSLNHGSCV---VGCCWLFSFS 107
           P  W      +   + A TCS     +ERH   +  RP   N    V   +G CWL +FS
Sbjct: 109 PTVWFLREGSMFVALGASTCSLLAIAIERHLTMIKMRPYDANKKHRVFLLIGMCWLIAFS 168

Query: 106 V 104
           +
Sbjct: 169 L 169

>RFNG_HUMAN (Q9Y644) Beta-1,3-N-acetylglucosaminyltransferase radical fringe|
           (EC 2.4.1.222) (O-fucosylpeptide
           3-beta-N-acetylglucosaminyltransferase)
          Length = 331

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = +2

Query: 44  PLRSTTPALIPSPTVLTTSTNRKRKQPATTNNTRPMIERARPRYYIF 184
           P R   P+L P    +   T RK   P      R  I RAR + +IF
Sbjct: 47  PSRPAAPSLRPDDVFIAVKTTRKNHGPRLRLLLRTWISRARQQTFIF 93

>KI18A_HUMAN (Q8NI77) Kinesin family member 18A|
          Length = 898

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = +2

Query: 62  PALIPSPTVLTTSTNRKRKQPATTNNT 142
           P+++PS   +TT+  RKRK  ++T+N+
Sbjct: 814 PSMVPSYMAMTTAAKRKRKLTSSTSNS 840

>EDG3_HUMAN (Q99500) Sphingosine 1-phosphate receptor Edg-3 (S1P receptor|
           Edg-3) (Endothelial differentiation G-protein coupled
           receptor 3) (Sphingosine 1-phosphate receptor 3) (S1P3)
          Length = 378

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
 Frame = -1

Query: 277 PRTWAREWAMLPPPIMAPTCSERRRWMERHAKDVVSRPCSLNHGSCV---VGCCWLFSFS 107
           P  W      +   + A TCS     +ERH   +  RP   N    V   +G CWL +F+
Sbjct: 108 PTVWFLREGSMFVALGASTCSLLAIAIERHLTMIKMRPYDANKRHRVFLLIGMCWLIAFT 167

Query: 106 V 104
           +
Sbjct: 168 L 168

>IL21R_HUMAN (Q9HBE5) Interleukin-21 receptor precursor (IL-21R) (Novel|
           interleukin receptor)
          Length = 538

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = -1

Query: 277 PRTWAREWAMLPPPIMAP 224
           PR++ R+W ++PPP+ +P
Sbjct: 516 PRSYLRQWVVIPPPLSSP 533

>CYAA_SACKL (P23466) Adenylate cyclase (EC 4.6.1.1) (ATP pyrophosphate-lyase)|
           (Adenylyl cyclase)
          Length = 1839

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
 Frame = +2

Query: 77  SPTVLTTSTNRKRKQPATTNNTRPMIERARPRY---YIFGMSFHPPSSFRTCRXHYRRGX 247
           SPT       R+ K P         +  A P++   Y  G++ H        R H +RG 
Sbjct: 3   SPTDAERVNMRREKHPQIEETFEEHVHNAMPKFKKHYALGITTHTNDEDDDPRDHRQRGI 62

Query: 248 HRP 256
           H P
Sbjct: 63  HNP 65

>GLMS_SYNEL (Q8DJI6) Glucosamine--fructose-6-phosphate aminotransferase|
           [isomerizing] (EC 2.6.1.16) (Hexosephosphate
           aminotransferase) (D-fructose-6-phosphate
           amidotransferase) (GFAT)
           (L-glutamine-D-fructose-6-phosphate amidotransferase)
           (Glucosamine-6-ph
          Length = 625

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 19/82 (23%)
 Frame = +2

Query: 53  STTPALIP----------------SPT---VLTTSTNRKRKQPATTNNTRPMIERARPRY 175
           S TPA+IP                +PT   V     +R RK P T N    M+E+   ++
Sbjct: 195 SDTPAIIPYTRAVLPLENGELARLTPTGVEVYDFEGHRLRKTPRTLNWNPVMVEKQGFKH 254

Query: 176 YIFGMSFHPPSSFRTCRXHYRR 241
           Y+    +  P   R C  +Y R
Sbjct: 255 YMLKEIYEQPGVVRACLENYLR 276

>POLN_EEVVT (P27282) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)|
           [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC
           2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1);
           Protease/triphosphatase/NTPase/helicase nsP2 (EC
           3.4.22.-) (EC 3.1.3.33) (EC
          Length = 2492

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -1

Query: 205 RWMERHAKDVVS-RPCSLNHGSCVVGCCWLF 116
           RW + + +D    RP  L     V+GCCW F
Sbjct: 393 RWAKEYKEDQEDERPLGLRDRQLVMGCCWAF 423

>POLN_EEVVP (P36328) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)|
           [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC
           2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1);
           Protease/triphosphatase/NTPase/helicase nsP2 (EC
           3.4.22.-) (EC 3.1.3.33) (EC
          Length = 2492

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -1

Query: 205 RWMERHAKDVVS-RPCSLNHGSCVVGCCWLF 116
           RW + + +D    RP  L     V+GCCW F
Sbjct: 393 RWAKEYKEDQEDERPLGLRDRQLVMGCCWAF 423

>FA53B_HUMAN (Q14153) Protein FAM53B|
          Length = 422

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 44  PLRSTTPALIPSPTVLTTSTNRKRKQPATTNNTRPMIERARP 169
           P  ++TPA  P     ++  +R R QP   N+ +  ++R RP
Sbjct: 244 PSANSTPASTPELARRSSGLSRSRSQPCVLNDKKVGVKRRRP 285

>POLN_EEVVC (Q8V294) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)|
           [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC
           2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1);
           Protease/triphosphatase/NTPase/helicase nsP2 (EC
           3.4.22.-) (EC 3.1.3.33) (EC
          Length = 2496

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -1

Query: 205 RWMERHAKDVVS-RPCSLNHGSCVVGCCWLF 116
           RW + + +D    RP  L     V+GCCW F
Sbjct: 393 RWAKEYKEDQEDERPLGLRDRQLVMGCCWAF 423

>POLN_EEVV3 (P36327) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)|
           [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC
           2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1);
           Protease/triphosphatase/NTPase/helicase nsP2 (EC
           3.4.22.-) (EC 3.1.3.33) (EC
          Length = 2485

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -1

Query: 205 RWMERHAKDVVS-RPCSLNHGSCVVGCCWLF 116
           RW + + +D    RP  L     V+GCCW F
Sbjct: 393 RWAKEYKEDQEDERPLGLRDRQLVMGCCWAF 423

>POLN_EEVVM (Q9WJC7) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)|
           [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC
           2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1);
           Protease/triphosphatase/NTPase/helicase nsP2 (EC
           3.4.22.-) (EC 3.1.3.33) (EC
          Length = 2498

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -1

Query: 205 RWMERHAKDVVS-RPCSLNHGSCVVGCCWLF 116
           RW + + +D    RP  L     V+GCCW F
Sbjct: 393 RWAKEYKEDQEDERPLGLRDRQLVMGCCWAF 423

>TT1_ARATH (Q8VWG3) TRANSPARENT TESTA 1 protein (Zinc finger protein TT1)|
           (TTL1)
          Length = 303

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 9/60 (15%)
 Frame = +2

Query: 113 RKQPATTNNTRPMIERARPRYY-IFGMSFH-------PPSSFRTCRXHY-RRGXHRPFPC 265
           RK P +   T+P      P Y  + G   H       P   FRT + HY R+  H+PF C
Sbjct: 172 RKGPESLKGTQPRAMLGIPCYCCVEGCRNHIDHPRSKPLKDFRTLQTHYKRKHGHKPFSC 231

>DOCK8_HUMAN (Q8NF50) Dedicator of cytokinesis protein 8|
          Length = 2031

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 14/66 (21%)
 Frame = +2

Query: 89   LTTSTNRKRKQPATTN------NTRPMIERARPRYY--IFGM------SFHPPSSFRTCR 226
            L T+  R+ +Q    N      N RPMIER  P  Y  IF +      SFH  SSFR C 
Sbjct: 1966 LITADQREYQQELKKNYNKLKENLRPMIERKIPELYKPIFRVESQKRDSFH-RSSFRKCE 2024

Query: 227  XHYRRG 244
                +G
Sbjct: 2025 TQLSQG 2030

>AT7L1_HUMAN (Q9ULK2) Ataxin-7-like protein 1 (Fragment)|
          Length = 864

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
 Frame = +2

Query: 26  SRYKITPLRSTTPALIPS----PTVLTTSTNRKRKQPATTNNTRPMIERARPRYYIFGMS 193
           S +K     S  PA+IPS    P+   TS + K K  +T ++  P  ++ +P+      S
Sbjct: 599 STFKAPSAVSPIPAVIPSPSHKPSKTKTSKSSKVKDLSTRSDESPSNKKRKPQSSTSSSS 658

Query: 194 FHPPSSFRTCRXHYRRGXHR 253
               SS +T       G H+
Sbjct: 659 SSSSSSLQTSLSSPLSGPHK 678

>POLN_EEEVF (Q4QXJ8) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)|
           [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC
           2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1);
           Protease/triphosphatase/NTPase/helicase nsP2 (EC
           3.4.22.-) (EC 3.1.3.33) (EC
          Length = 2493

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -1

Query: 238 PIMAPTCSERRRWMERHAKDVVS-RPCSLNHGSCVVGCCWLF 116
           P++A   S   RW   H  D+   +   +   S V+GCCW F
Sbjct: 383 PVVAQAFS---RWAREHRADLEDEKGLGVRERSLVMGCCWAF 421

>LSP2_DROME (Q24388) Larval serum protein 2 precursor (LSP-2) (Hexamerin 2)|
          Length = 701

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 16/60 (26%), Positives = 23/60 (38%)
 Frame = +2

Query: 80  PTVLTTSTNRKRKQPATTNNTRPMIERARPRYYIFGMSFHPPSSFRTCRXHYRRGXHRPF 259
           P  LTT         +   N  P +E +    Y FG + H   S    +   +R  H+PF
Sbjct: 448 PESLTTYFEHFDSDISNAVNVEPAVEGSADPLYTFGRNSHYKGSSYVIKARQQRLNHKPF 507

>MAP4_HUMAN (P27816) Microtubule-associated protein 4 (MAP 4)|
          Length = 1152

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = +2

Query: 11   AYLI*SRYKITPLRS---TTPALIPSPTVLTTSTNRKRKQPATTNNTRPMIERARPR 172
            A ++ SR K TP+ S   TTP +   PT    S+   R     TN + P ++  R +
Sbjct: 882  AGVVPSRVKATPMPSRPSTTPFIDKKPTSAKPSSTTPRLSRLATNTSAPDLKNVRSK 938

>FKS26_MOUSE (Q8R3L2) Protein FKSG26|
          Length = 676

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
 Frame = +2

Query: 38  ITPLRSTTPALIPSPTVLTTSTNRKRKQPATTNNTRPMIERARPRYYIFGMSFHPPSSFR 217
           I  L  T+P  + S   L+ +   +  Q       R +IERA    Y    +FHP  S  
Sbjct: 275 IVVLLQTSPYHVDSLLQLSDACRFQEDQEMA----RDLIERA---LYSMECAFHPLFSLT 327

Query: 218 --TCRXHYRRGXHRPF 259
             TCR  YRR  +R F
Sbjct: 328 SGTCRLDYRRPENRSF 343

>R1AB_CVMJH (P19751) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like
            proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44);
            3C-like proteinase
          Length = 7180

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 140  CCWLLLAVFFFCS 102
            CCW+L + F FCS
Sbjct: 3650 CCWILASTFLFCS 3662

>FA53B_MOUSE (Q8BGR5) Protein FAM53B|
          Length = 422

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 44  PLRSTTPALIPSPTVLTTSTNRKRKQPATTNNTRPMIERARP 169
           P  ++TPA  P     ++   R R QP   N+ +  ++R RP
Sbjct: 245 PSANSTPASTPELARRSSGLARSRSQPCVLNDKKIGVKRRRP 286

>R1AB_CVMA5 (P16342) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like
            proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44);
            3C-like proteinase
          Length = 7176

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 140  CCWLLLAVFFFCS 102
            CCW+L + F FCS
Sbjct: 3646 CCWILASTFLFCS 3658

>PET_ECOLI (O68900) Serine protease pet precursor (EC 3.4.21.-)|
           (Plasmid-encoded toxin pet)
          Length = 1295

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +1

Query: 16  FNMIPIQDYSTALNNSSAYSI--SYRPNYEYEQKKKTASNNQQH 141
           F  +P+ D+S+A  N +A SI  +Y     +  K K+++N Q +
Sbjct: 94  FPALPVPDFSSATANGAATSIGGAYAVTVAHNAKNKSSANYQTY 137

>MTR1L_HUMAN (Q13585) Melatonin-related receptor (G protein-coupled receptor 50)|
           (H9)
          Length = 613

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = +2

Query: 47  LRSTTPALIPSPTVLTTSTN 106
           L S T A +P PTV+TTSTN
Sbjct: 575 LESDTIADLPDPTVVTTSTN 594

>GCSP_CHRVO (Q7NSJ5) Glycine dehydrogenase [decarboxylating] (EC 1.4.4.2)|
           (Glycine decarboxylase) (Glycine cleavage system
           P-protein)
          Length = 950

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -1

Query: 289 LPCFPRTWAREWAMLPPPIMAPTCSERRRWMERHAKDVVSRPCSLNHGSCVVGCC 125
           L   P    RE A+L  P+     SE    M R+ K + +R  ++NH    +G C
Sbjct: 451 LDAIPAALKRESAILTHPVFNTHHSEHE--MLRYMKKLENRDLAMNHSMISLGSC 503

>DAN4_YEAST (P47179) Cell wall protein DAN4 precursor|
          Length = 1161

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +2

Query: 41  TPLRSTTPALIPSPTVLTTSTNRKRKQPATTNNT 142
           T   STTP    +PT  TTST  +    +TT  T
Sbjct: 218 TSTTSTTPTTSTTPTTSTTSTTSQTSTKSTTPTT 251


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,464,535
Number of Sequences: 219361
Number of extensions: 861158
Number of successful extensions: 3080
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 2765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3045
length of database: 80,573,946
effective HSP length: 71
effective length of database: 64,999,315
effective search space used: 1559983560
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)