ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl29g09 |
|---|---|
| Clone Library Name | barley_pub |
>COPA_HUMAN (P53621) Coatomer subunit alpha (Alpha-coat protein) (Alpha-COP)| (HEPCOP) (HEP-COP) [Contains: Xenin (Xenopsin-related peptide); Proxenin] Length = 1224 Score = 70.9 bits (172), Expect = 1e-12 Identities = 30/71 (42%), Positives = 44/71 (61%) Frame = -2 Query: 362 DSHELNYDYRNPFVVCGSTYVPIYRGQKDISCPYCGSRFVPATEGQLCTICELAVVGADA 183 D+++LNYD NPF +C ++Y PIYRG+ CP G+ + P +GQ+C + + +G D Sbjct: 1154 DAYQLNYDMHNPFDICAASYRPIYRGKPVEKCPLSGACYSPEFKGQICRVTTVTEIGKDV 1213 Query: 182 SGLLCSPTQTR 150 GL SP Q R Sbjct: 1214 IGLRISPLQFR 1224
>COPA_BOVIN (Q27954) Coatomer subunit alpha (Alpha-coat protein) (Alpha-COP)| (HEPCOP) (HEP-COP) [Contains: Xenin (Xenopsin-related peptide); Proxenin] Length = 1224 Score = 70.9 bits (172), Expect = 1e-12 Identities = 30/71 (42%), Positives = 44/71 (61%) Frame = -2 Query: 362 DSHELNYDYRNPFVVCGSTYVPIYRGQKDISCPYCGSRFVPATEGQLCTICELAVVGADA 183 D+++LNYD NPF +C ++Y PIYRG+ CP G+ + P +GQ+C + + +G D Sbjct: 1154 DAYQLNYDMHNPFDICAASYRPIYRGKPVEKCPLSGACYSPEFKGQICKVTTVTEIGKDV 1213 Query: 182 SGLLCSPTQTR 150 GL SP Q R Sbjct: 1214 IGLRISPLQFR 1224
>COPA_YEAST (P53622) Coatomer subunit alpha (Alpha-coat protein) (Alpha-COP)| Length = 1201 Score = 44.7 bits (104), Expect = 1e-04 Identities = 21/63 (33%), Positives = 36/63 (57%) Frame = -2 Query: 362 DSHELNYDYRNPFVVCGSTYVPIYRGQKDISCPYCGSRFVPATEGQLCTICELAVVGADA 183 D+ +++D F +C +TY PIY +S P GS++V + ++ I ++ +GA A Sbjct: 1135 DAIPIDFDPYAKFDICAATYKPIYEDTPSVSDPLTGSKYVITEKDKIDRIAMISKIGAPA 1194 Query: 182 SGL 174 SGL Sbjct: 1195 SGL 1197
>ZG58_XENLA (P18730) Gastrula zinc finger protein XLCGF58.1 (Fragment)| Length = 420 Score = 31.2 bits (69), Expect = 1.1 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 11/53 (20%) Frame = -2 Query: 371 GKQDSHELNYDYRNPFVV--CGSTYVP---------IYRGQKDISCPYCGSRF 246 G + H L + + PF+ CG T++ I+ G+K +CP CG F Sbjct: 47 GHLNVHSLVHSTKKPFICTECGKTFIVKQLLHEHFLIHTGEKPYACPECGKLF 99
>ZN425_MACFA (Q9N003) Zinc finger protein 425 (Fragment)| Length = 741 Score = 29.3 bits (64), Expect = 4.3 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 11/53 (20%) Frame = -2 Query: 371 GKQDSHELNYDYRNPF--VVCGSTYVPIYR---------GQKDISCPYCGSRF 246 G SH L + + PF V+CG ++ YR G+K CP C + Sbjct: 612 GNLKSHLLQHSGQKPFSCVMCGKSFTQQYRLTEHIRVHSGEKPFQCPECDKSY 664
>ZN425_HUMAN (Q6IV72) Zinc finger protein 425| Length = 752 Score = 29.3 bits (64), Expect = 4.3 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 11/53 (20%) Frame = -2 Query: 371 GKQDSHELNYDYRNPF--VVCGSTYVPIYR---------GQKDISCPYCGSRF 246 G SH L + + PF V+CG ++ YR G+K CP C + Sbjct: 623 GNLKSHLLQHSGQKPFSCVMCGKSFTQQYRLTEHIRVHSGEKPFQCPECDKSY 675
>JAK3_HUMAN (P52333) Tyrosine-protein kinase JAK3 (EC 2.7.10.2) (Janus kinase 3)| (JAK-3) (Leukocyte janus kinase) (L-JAK) Length = 1124 Score = 29.3 bits (64), Expect = 4.3 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 3/56 (5%) Frame = +3 Query: 54 QSVNLLVKYKTRQALRD*-KEYRGALTTS--LFRSSRLCRGAQEARGVRADHRQLA 212 QS+ L+++Y LRD + +R L S L SS++C+G + R HR LA Sbjct: 896 QSLRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLGSRRCVHRDLA 951
>ZN500_HUMAN (O60304) Zinc finger protein 500| Length = 480 Score = 29.3 bits (64), Expect = 4.3 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 11/48 (22%) Frame = -2 Query: 356 HELNYDYRNPF--VVCG---------STYVPIYRGQKDISCPYCGSRF 246 H+ + P+ +VCG ST+ ++ G+K CP CG RF Sbjct: 343 HQRTHTGERPYKCLVCGKGFSDRSNFSTHQRVHTGEKPYPCPECGKRF 390
>EGR2_XENLA (Q08427) Early growth response protein 2 (EGR-2) (Krox-20 protein)| Length = 421 Score = 28.5 bits (62), Expect = 7.4 Identities = 9/27 (33%), Positives = 17/27 (62%) Frame = -2 Query: 311 STYVPIYRGQKDISCPYCGSRFVPATE 231 +T++ + G+K +C YCG +F + E Sbjct: 334 TTHIRTHTGEKPFACDYCGRKFARSDE 360
>YQZ1_CAEEL (Q09319) Hypothetical protein F40B5.1| Length = 174 Score = 28.5 bits (62), Expect = 7.4 Identities = 10/17 (58%), Positives = 14/17 (82%) Frame = -3 Query: 79 YFTRRFTDCVRNKYNST 29 YF+ + DCV+N+YNST Sbjct: 29 YFSAKVIDCVQNQYNST 45
>EGR2_RAT (P51774) Early growth response protein 2 (EGR-2) (Krox-20 protein)| Length = 470 Score = 28.5 bits (62), Expect = 7.4 Identities = 9/27 (33%), Positives = 17/27 (62%) Frame = -2 Query: 311 STYVPIYRGQKDISCPYCGSRFVPATE 231 +T++ + G+K +C YCG +F + E Sbjct: 383 TTHIRTHTGEKPFACDYCGRKFARSDE 409
>EGR2_MOUSE (P08152) Early growth response protein 2 (EGR-2) (Krox-20 protein)| Length = 470 Score = 28.5 bits (62), Expect = 7.4 Identities = 9/27 (33%), Positives = 17/27 (62%) Frame = -2 Query: 311 STYVPIYRGQKDISCPYCGSRFVPATE 231 +T++ + G+K +C YCG +F + E Sbjct: 383 TTHIRTHTGEKPFACDYCGRKFARSDE 409
>RGYR1_SULTO (Q971T7) Reverse gyrase 1 [Includes: Helicase (EC 3.6.1.-);| Topoisomerase (EC 5.99.1.3)] Length = 1156 Score = 28.5 bits (62), Expect = 7.4 Identities = 13/39 (33%), Positives = 22/39 (56%) Frame = -2 Query: 317 CGSTYVPIYRGQKDISCPYCGSRFVPATEGQLCTICELA 201 CG T+ K +CPYCGS F+ ++E + + +L+ Sbjct: 661 CGKTFTI-----KSNTCPYCGSVFISSSEKVVSALRKLS 694
>SYFB_RALSO (Q8XZ24) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 809 Score = 28.5 bits (62), Expect = 7.4 Identities = 18/62 (29%), Positives = 32/62 (51%) Frame = -2 Query: 323 VVCGSTYVPIYRGQKDISCPYCGSRFVPATEGQLCTICELAVVGADASGLLCSPTQTR*A 144 +VCG+ V + G K + C G+ P +G+ I + G ++ G+LCS + + + Sbjct: 77 IVCGAPNVSV--GIK-VPCALVGAELPPGDDGKPFKIKIGKLRGVESYGMLCSARELKLS 133 Query: 143 EE 138 EE Sbjct: 134 EE 135
>EGR2_HUMAN (P11161) Early growth response protein 2 (EGR-2) (Krox-20 protein)| (AT591) Length = 476 Score = 28.5 bits (62), Expect = 7.4 Identities = 9/27 (33%), Positives = 17/27 (62%) Frame = -2 Query: 311 STYVPIYRGQKDISCPYCGSRFVPATE 231 +T++ + G+K +C YCG +F + E Sbjct: 386 TTHIRTHTGEKPFACDYCGRKFARSDE 412
>LNX1_MOUSE (O70263) Ubiquitin ligase LNX (EC 6.3.2.-) (Numb-binding protein 1)| (Ligand of Numb-binding protein 1) (Ligand of Numb-protein X 1) Length = 728 Score = 28.5 bits (62), Expect = 7.4 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 4/64 (6%) Frame = -3 Query: 316 VARRMSPSTAAKRTSRALTADPGLFLPRKGSFV----PYASWRWSARTPRASCAPLHRRD 149 +A +SP +A T +T +PGL P S V P A+ S R+ R P R Sbjct: 160 MATTLSPEVSAAATISLMTDEPGLDNPAYVSSVEDGEPVANSSDSGRSNRTRARPFERST 219 Query: 148 ERKR 137 R R Sbjct: 220 MRSR 223
>HYPA_METKA (Q8TV53) Probable hydrogenase nickel incorporation protein hypA| Length = 142 Score = 28.5 bits (62), Expect = 7.4 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = -2 Query: 278 DISCPYCGSRFVPATEGQLCTI 213 D+ CP CGSR V G C+I Sbjct: 106 DLKCPKCGSRAVKLDGGDACSI 127
>HIS7_PHYPR (P28624) Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)| (IGPD) Length = 452 Score = 28.1 bits (61), Expect = 9.7 Identities = 11/29 (37%), Positives = 18/29 (62%) Frame = -1 Query: 321 RLWLDVCPHLPRPKGHLVPLLRIPVCSCH 235 ++WL+ CP P P+ L+ L + V +CH Sbjct: 147 QIWLEDCPPKPSPEPILLALKALGVEACH 175
>YOW1_CAEEL (P30647) Hypothetical protein ZK643.1| Length = 292 Score = 28.1 bits (61), Expect = 9.7 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%) Frame = +1 Query: 64 TSW*NIRQDRLYETRKN-IGEL*RLASSAHLVCVGEHRRP 180 T W NI D+++ET K I +L S + VG+H+ P Sbjct: 49 TGWVNIHTDKIFETEKTYIDTQVQLCDSGTCLPVGKHQFP 88
>ZN324_HUMAN (O75467) Zinc finger protein 324 (Zinc finger protein ZF5128)| Length = 553 Score = 28.1 bits (61), Expect = 9.7 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 11/48 (22%) Frame = -2 Query: 356 HELNYDYRNPFV--VCGSTYVP---------IYRGQKDISCPYCGSRF 246 HE + PFV +CG+ + ++ G+K +CP CG F Sbjct: 387 HERTHTGEKPFVCALCGAAFSQGSSLFKHQRVHTGEKPFACPQCGRAF 434
>GAGXE_DROME (Q9NBX5) Nucleic-acid-binding protein from transposon X-element| Length = 501 Score = 28.1 bits (61), Expect = 9.7 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = +1 Query: 115 IGEL*RLASSAHLVCVGEHRRPEASAPTTASSHMVQSCP 231 IG+L S++H + +R ASA TT+S+ QS P Sbjct: 89 IGDLYDQPSTSHQAAIAAAKRDAASAGTTSSAKRAQSKP 127
>BCL6B_HUMAN (Q8N143) B-cell CLL/lymphoma 6 member B protein (Bcl6-associated| zinc finger protein) (Zinc finger protein 62) Length = 480 Score = 28.1 bits (61), Expect = 9.7 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 11/54 (20%) Frame = -2 Query: 371 GKQDSHELNYDYRNPF--VVCGS---------TYVPIYRGQKDISCPYCGSRFV 243 G SH + P+ +CG+ T+ I+ G+K C CGSRFV Sbjct: 342 GNLASHRTVHTGEKPYHCSICGARFNRPANLKTHSRIHSGEKPYKCETCGSRFV 395
>ZN206_HUMAN (Q96SZ4) Zinc finger protein 206 (Zinc finger and SCAN| domain-containing protein 10) Length = 725 Score = 28.1 bits (61), Expect = 9.7 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = -2 Query: 296 IYRGQKDISCPYCGSRFV 243 ++ G+K +CP CG RFV Sbjct: 516 VHTGEKPYACPQCGKRFV 533
>BCL6B_MOUSE (O88282) B-cell CLL/lymphoma 6 member B protein (Bcl6-associated| zinc finger protein) Length = 474 Score = 28.1 bits (61), Expect = 9.7 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 11/54 (20%) Frame = -2 Query: 371 GKQDSHELNYDYRNPF--VVCGS---------TYVPIYRGQKDISCPYCGSRFV 243 G SH + P+ +CG+ T+ I+ G+K C CGSRFV Sbjct: 336 GNLASHRTVHTGEKPYRCSICGARFNRPANLKTHSRIHSGEKPYKCETCGSRFV 389 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,095,893 Number of Sequences: 219361 Number of extensions: 1026761 Number of successful extensions: 4813 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 3438 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4789 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
