ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl29g09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF176226.1|AF176226 Triticum aestivum COP alpha homolog mRNA,... 670 0.0
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 174 2e-40
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 174 2e-40
4gb|AC082645.13|AC082645 Oryza sativa chromosome 3 BAC OSJNBb0033... 174 2e-40
5dbj|AK100286.1| Oryza sativa (japonica cultivar-group) cDNA clon... 174 2e-40
6dbj|AK059218.1| Oryza sativa (japonica cultivar-group) cDNA clon... 174 2e-40
7ref|XM_469513.1| Oryza sativa (japonica cultivar-group), mRNA 172 6e-40
8ref|XM_469514.1| Oryza sativa (japonica cultivar-group), mRNA 159 9e-36
9dbj|AK058652.1| Oryza sativa (japonica cultivar-group) cDNA clon... 151 2e-33
10ref|XM_450153.1| Oryza sativa (japonica cultivar-group), mRNA 145 1e-31
11dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 145 1e-31
12dbj|AP005680.3| Oryza sativa (japonica cultivar-group) genomic D... 145 1e-31
13dbj|AK105672.1| Oryza sativa (japonica cultivar-group) cDNA clon... 145 1e-31
14dbj|AK103786.1| Oryza sativa (japonica cultivar-group) cDNA clon... 145 1e-31
15dbj|AK058402.1| Oryza sativa (japonica cultivar-group) cDNA clon... 145 1e-31
16gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complet... 111 2e-21
17gb|AY104039.1| Zea mays PCO096800 mRNA sequence 101 2e-18
18gb|AY765263.1| Pseudomonas aeruginosa strain MSH type II pyoverd... 42 1.5
19ref|XM_752598.1| Ustilago maydis 521 hypothetical protein (UM015... 40 5.8
20gb|AC122926.2| Mus musculus BAC clone RP23-10E15 from 6, complet... 40 5.8
21gb|DQ115816.1| Cyanobacteria phage AS-1 contig_9 genomic sequence 40 5.8
22gb|AF540993.1| Pseudomonas aeruginosa isolate 2-164 pyoverdin bi... 40 5.8
23gb|AF540992.1| Pseudomonas aeruginosa isolate 1-60 pyoverdin bio... 40 5.8
24emb|CR847206.1| Takifugu rubripes DNA, highly conserved vertebra... 40 5.8 
>gb|AF176226.1|AF176226 Triticum aestivum COP alpha homolog mRNA, partial cds
          Length = 1826

 Score =  670 bits (338), Expect = 0.0
 Identities = 410/431 (95%), Gaps = 6/431 (1%)
 Strand = Plus / Minus

                                                                        
Query: 5    atgagaagaactccgacaaaaccatgtactattatacttattccttacacaatcagtaaa 64
            ||||||| ||||| ||||||||||||||||||||| |||||||||||| || ||||||||
Sbjct: 1735 atgagaaaaactctgacaaaaccatgtactattatgcttattccttac-cattcagtaaa 1677

                                                                        
Query: 65   cctcctggtaaaatataagacaagacaggctttacgagactagaaagaatataggggagc 124
            ||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||
Sbjct: 1676 cctcctggtaaaatataagacaagac----tttacgagactagaaagaatataggggagc 1621

                                                                        
Query: 125  tctaacgactagcctcttccgctcatctcgtctgtgtaggggagcacaggaggcccgagg 184
            ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 1620 tctaacgactagcctcttccgctcatctcat-tgtgtaggggagcacaggaggcccgagg 1562

                                                                        
Query: 185  cgtccgcgccgaccaccgccagctcgcatatggtacaaagctgcccttccgtggcaggaa 244
            |||||||||||||||| ||||||||||||||||||||||||||||||||  ||  |||||
Sbjct: 1561 cgtccgcgccgaccacagccagctcgcatatggtacaaagctgcccttcaatgttaggaa 1502

                                                                        
Query: 245  caaaccgggatccgcagtaagggcacgagatgtccttttggccgcggtagatggggacat 304
            ||||||||||||||||||| | ||||||||| ||||||||||||||||||||||| ||||
Sbjct: 1501 caaaccgggatccgcagtatgcgcacgagatatccttttggccgcggtagatgggaacat 1442

                                                                        
Query: 305  acgtcgagccacagacgacgaacggatttctgtagtcgtagttgagctcatggctgtcct 364
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1441 acgtcgagccacagacgacgaacggatttctgtagtcgtagttgagctcatggctgtcct 1382

                                                                        
Query: 365  gcttgccgttgcactgctgctgcacctgccgagccttcttcgcctggacctcgttggggc 424
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1381 gcttgccgttgcactgctgctgcacctgccgagccttcttcgcttggacctcgttggggc 1322

                       
Query: 425  tgttctcgagg 435
            |||||||||||
Sbjct: 1321 tgttctcgagg 1311
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  174 bits (88), Expect = 2e-40
 Identities = 214/256 (83%)
 Strand = Plus / Plus

                                                                            
Query: 144      cgctcatctcgtctgtgtaggggagcacaggaggcccgaggcgtccgcgccgaccaccgc 203
                |||| |||||| ||| ||||||||||| |||||||| || || || || || ||||| ||
Sbjct: 28424883 cgcttatctcgactgcgtaggggagcagaggaggcctgaagcatctgcaccaaccacggc 28424942

                                                                            
Query: 204      cagctcgcatatggtacaaagctgcccttccgtggcaggaacaaaccgggatccgcagta 263
                 ||||| |||||||||||||||||||||||  | | ||||||||||||||| || |||||
Sbjct: 28424943 aagctcacatatggtacaaagctgcccttcgatcgaaggaacaaaccgggagccacagta 28425002

                                                                            
Query: 264      agggcacgagatgtccttttggccgcggtagatggggacatacgtcgagccacagacgac 323
                 ||||| || |  ||||| ||||| |||||||| || |||||||| | ||||||||| ||
Sbjct: 28425003 cgggcaggaaacatccttctggccacggtagattggaacatacgtggcgccacagacaac 28425062

                                                                            
Query: 324      gaacggatttctgtagtcgtagttgagctcatggctgtcctgcttgccgttgcactgctg 383
                 || |||||||||||||| ||||| ||||||  ||| |||| ||||||  ||||||||||
Sbjct: 28425063 aaatggatttctgtagtcatagttcagctcagagctatccttcttgccactgcactgctg 28425122

                                
Query: 384      ctgcacctgccgagcc 399
                ||||||||| ||||||
Sbjct: 28425123 ctgcacctgtcgagcc 28425138



 Score =  159 bits (80), Expect = 9e-36
 Identities = 197/236 (83%)
 Strand = Plus / Plus

                                                                            
Query: 196      accaccgccagctcgcatatggtacaaagctgcccttccgtggcaggaacaaaccgggat 255
                ||||| || ||||| |||||||||||||||||||||||  | | ||||||||||||||||
Sbjct: 28436327 accacggcaagctcacatatggtacaaagctgcccttcgatcgaaggaacaaaccgggat 28436386

                                                                            
Query: 256      ccgcagtaagggcacgagatgtccttttggccgcggtagatggggacatacgtcgagcca 315
                || ||||| ||||| || |  ||||| ||||| |||||||| || ||||| || | ||||
Sbjct: 28436387 ccacagtacgggcaggaaacatccttctggccacggtagattggaacatatgtggcgcca 28436446

                                                                            
Query: 316      cagacgacgaacggatttctgtagtcgtagttgagctcatggctgtcctgcttgccgttg 375
                ||||| || || |||||||||||||| ||||| ||||||  ||| |||| ||||||  ||
Sbjct: 28436447 cagacaacaaatggatttctgtagtcatagttcagctcagagctatccttcttgccactg 28436506

                                                                        
Query: 376      cactgctgctgcacctgccgagccttcttcgcctggacctcgttggggctgttctc 431
                ||||||||||||||||| |||||| || | |||||| |||| || ||| |||||||
Sbjct: 28436507 cactgctgctgcacctgtcgagccctccttgcctgggcctcattagggttgttctc 28436562



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/43 (93%), Gaps = 2/43 (4%)
 Strand = Plus / Plus

                                                           
Query: 39       tacttattccttacacaatcagtaaacctcctggtaaaatata 81
                |||||||||||||||  |||||||||| |||||||||||||||
Sbjct: 28424787 tacttattccttaca--atcagtaaacatcctggtaaaatata 28424827



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 100      gagactagaaagaatataggggagc 124
                |||||||||||||||||| ||||||
Sbjct: 28424847 gagactagaaagaatataagggagc 28424871
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  174 bits (88), Expect = 2e-40
 Identities = 214/256 (83%)
 Strand = Plus / Plus

                                                                            
Query: 144      cgctcatctcgtctgtgtaggggagcacaggaggcccgaggcgtccgcgccgaccaccgc 203
                |||| |||||| ||| ||||||||||| |||||||| || || || || || ||||| ||
Sbjct: 28516207 cgcttatctcgactgcgtaggggagcagaggaggcctgaagcatctgcaccaaccacggc 28516266

                                                                            
Query: 204      cagctcgcatatggtacaaagctgcccttccgtggcaggaacaaaccgggatccgcagta 263
                 ||||| |||||||||||||||||||||||  | | ||||||||||||||| || |||||
Sbjct: 28516267 aagctcacatatggtacaaagctgcccttcgatcgaaggaacaaaccgggagccacagta 28516326

                                                                            
Query: 264      agggcacgagatgtccttttggccgcggtagatggggacatacgtcgagccacagacgac 323
                 ||||| || |  ||||| ||||| |||||||| || |||||||| | ||||||||| ||
Sbjct: 28516327 cgggcaggaaacatccttctggccacggtagattggaacatacgtggcgccacagacaac 28516386

                                                                            
Query: 324      gaacggatttctgtagtcgtagttgagctcatggctgtcctgcttgccgttgcactgctg 383
                 || |||||||||||||| ||||| ||||||  ||| |||| ||||||  ||||||||||
Sbjct: 28516387 aaatggatttctgtagtcatagttcagctcagagctatccttcttgccactgcactgctg 28516446

                                
Query: 384      ctgcacctgccgagcc 399
                ||||||||| ||||||
Sbjct: 28516447 ctgcacctgtcgagcc 28516462



 Score =  159 bits (80), Expect = 9e-36
 Identities = 197/236 (83%)
 Strand = Plus / Plus

                                                                            
Query: 196      accaccgccagctcgcatatggtacaaagctgcccttccgtggcaggaacaaaccgggat 255
                ||||| || ||||| |||||||||||||||||||||||  | | ||||||||||||||||
Sbjct: 28527651 accacggcaagctcacatatggtacaaagctgcccttcgatcgaaggaacaaaccgggat 28527710

                                                                            
Query: 256      ccgcagtaagggcacgagatgtccttttggccgcggtagatggggacatacgtcgagcca 315
                || ||||| ||||| || |  ||||| ||||| |||||||| || ||||| || | ||||
Sbjct: 28527711 ccacagtacgggcaggaaacatccttctggccacggtagattggaacatatgtggcgcca 28527770

                                                                            
Query: 316      cagacgacgaacggatttctgtagtcgtagttgagctcatggctgtcctgcttgccgttg 375
                ||||| || || |||||||||||||| ||||| ||||||  ||| |||| ||||||  ||
Sbjct: 28527771 cagacaacaaatggatttctgtagtcatagttcagctcagagctatccttcttgccactg 28527830

                                                                        
Query: 376      cactgctgctgcacctgccgagccttcttcgcctggacctcgttggggctgttctc 431
                ||||||||||||||||| |||||| || | |||||| |||| || ||| |||||||
Sbjct: 28527831 cactgctgctgcacctgtcgagccctccttgcctgggcctcattagggttgttctc 28527886



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/43 (93%), Gaps = 2/43 (4%)
 Strand = Plus / Plus

                                                           
Query: 39       tacttattccttacacaatcagtaaacctcctggtaaaatata 81
                |||||||||||||||  |||||||||| |||||||||||||||
Sbjct: 28516111 tacttattccttaca--atcagtaaacatcctggtaaaatata 28516151



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 100      gagactagaaagaatataggggagc 124
                |||||||||||||||||| ||||||
Sbjct: 28516171 gagactagaaagaatataagggagc 28516195
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>gb|AC082645.13|AC082645 Oryza sativa chromosome 3 BAC OSJNBb0033N16 genomic sequence, complete
             sequence
          Length = 143681

 Score =  174 bits (88), Expect = 2e-40
 Identities = 214/256 (83%)
 Strand = Plus / Plus

                                                                         
Query: 144   cgctcatctcgtctgtgtaggggagcacaggaggcccgaggcgtccgcgccgaccaccgc 203
             |||| |||||| ||| ||||||||||| |||||||| || || || || || ||||| ||
Sbjct: 19013 cgcttatctcgactgcgtaggggagcagaggaggcctgaagcatctgcaccaaccacggc 19072

                                                                         
Query: 204   cagctcgcatatggtacaaagctgcccttccgtggcaggaacaaaccgggatccgcagta 263
              ||||| |||||||||||||||||||||||  | | ||||||||||||||| || |||||
Sbjct: 19073 aagctcacatatggtacaaagctgcccttcgatcgaaggaacaaaccgggagccacagta 19132

                                                                         
Query: 264   agggcacgagatgtccttttggccgcggtagatggggacatacgtcgagccacagacgac 323
              ||||| || |  ||||| ||||| |||||||| || |||||||| | ||||||||| ||
Sbjct: 19133 cgggcaggaaacatccttctggccacggtagattggaacatacgtggcgccacagacaac 19192

                                                                         
Query: 324   gaacggatttctgtagtcgtagttgagctcatggctgtcctgcttgccgttgcactgctg 383
              || |||||||||||||| ||||| ||||||  ||| |||| ||||||  ||||||||||
Sbjct: 19193 aaatggatttctgtagtcatagttcagctcagagctatccttcttgccactgcactgctg 19252

                             
Query: 384   ctgcacctgccgagcc 399
             ||||||||| ||||||
Sbjct: 19253 ctgcacctgtcgagcc 19268



 Score =  159 bits (80), Expect = 9e-36
 Identities = 197/236 (83%)
 Strand = Plus / Plus

                                                                         
Query: 196   accaccgccagctcgcatatggtacaaagctgcccttccgtggcaggaacaaaccgggat 255
             ||||| || ||||| |||||||||||||||||||||||  | | ||||||||||||||||
Sbjct: 30457 accacggcaagctcacatatggtacaaagctgcccttcgatcgaaggaacaaaccgggat 30516

                                                                         
Query: 256   ccgcagtaagggcacgagatgtccttttggccgcggtagatggggacatacgtcgagcca 315
             || ||||| ||||| || |  ||||| ||||| |||||||| || ||||| || | ||||
Sbjct: 30517 ccacagtacgggcaggaaacatccttctggccacggtagattggaacatatgtggcgcca 30576

                                                                         
Query: 316   cagacgacgaacggatttctgtagtcgtagttgagctcatggctgtcctgcttgccgttg 375
             ||||| || || |||||||||||||| ||||| ||||||  ||| |||| ||||||  ||
Sbjct: 30577 cagacaacaaatggatttctgtagtcatagttcagctcagagctatccttcttgccactg 30636

                                                                     
Query: 376   cactgctgctgcacctgccgagccttcttcgcctggacctcgttggggctgttctc 431
             ||||||||||||||||| |||||| || | |||||| |||| || ||| |||||||
Sbjct: 30637 cactgctgctgcacctgtcgagccctccttgcctgggcctcattagggttgttctc 30692



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/43 (93%), Gaps = 2/43 (4%)
 Strand = Plus / Plus

                                                        
Query: 39    tacttattccttacacaatcagtaaacctcctggtaaaatata 81
             |||||||||||||||  |||||||||| |||||||||||||||
Sbjct: 18917 tacttattccttaca--atcagtaaacatcctggtaaaatata 18957



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 100   gagactagaaagaatataggggagc 124
             |||||||||||||||||| ||||||
Sbjct: 18977 gagactagaaagaatataagggagc 19001
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>dbj|AK100286.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023075G08, full
            insert sequence
          Length = 4221

 Score =  174 bits (88), Expect = 2e-40
 Identities = 214/256 (83%)
 Strand = Plus / Minus

                                                                        
Query: 144  cgctcatctcgtctgtgtaggggagcacaggaggcccgaggcgtccgcgccgaccaccgc 203
            |||| |||||| ||| ||||||||||| |||||||| || || || || || ||||| ||
Sbjct: 3804 cgcttatctcgactgcgtaggggagcagaggaggcctgaagcatctgcaccaaccacggc 3745

                                                                        
Query: 204  cagctcgcatatggtacaaagctgcccttccgtggcaggaacaaaccgggatccgcagta 263
             ||||| |||||||||||||||||||||||  | | ||||||||||||||| || |||||
Sbjct: 3744 aagctcacatatggtacaaagctgcccttcgatcgaaggaacaaaccgggagccacagta 3685

                                                                        
Query: 264  agggcacgagatgtccttttggccgcggtagatggggacatacgtcgagccacagacgac 323
             ||||| || |  ||||| ||||| |||||||| || |||||||| | ||||||||| ||
Sbjct: 3684 cgggcaggaaacatccttctggccacggtagattggaacatacgtggcgccacagacaac 3625

                                                                        
Query: 324  gaacggatttctgtagtcgtagttgagctcatggctgtcctgcttgccgttgcactgctg 383
             || |||||||||||||| ||||| ||||||  ||| |||| ||||||  ||||||||||
Sbjct: 3624 aaatggatttctgtagtcatagttcagctcagagctatccttcttgccactgcactgctg 3565

                            
Query: 384  ctgcacctgccgagcc 399
            ||||||||| ||||||
Sbjct: 3564 ctgcacctgtcgagcc 3549



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/43 (93%), Gaps = 2/43 (4%)
 Strand = Plus / Minus

                                                       
Query: 39   tacttattccttacacaatcagtaaacctcctggtaaaatata 81
            |||||||||||||||  |||||||||| |||||||||||||||
Sbjct: 3900 tacttattccttaca--atcagtaaacatcctggtaaaatata 3860



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 100  gagactagaaagaatataggggagc 124
            |||||||||||||||||| ||||||
Sbjct: 3840 gagactagaaagaatataagggagc 3816
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>dbj|AK059218.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-C10, full
           insert sequence
          Length = 1032

 Score =  174 bits (88), Expect = 2e-40
 Identities = 214/256 (83%)
 Strand = Plus / Minus

                                                                       
Query: 144 cgctcatctcgtctgtgtaggggagcacaggaggcccgaggcgtccgcgccgaccaccgc 203
           |||| |||||| ||| ||||||||||| |||||||| || || || || || ||||| ||
Sbjct: 908 cgcttatctcgactgcgtaggggagcagaggaggcctgaagcatctgcaccaaccacggc 849

                                                                       
Query: 204 cagctcgcatatggtacaaagctgcccttccgtggcaggaacaaaccgggatccgcagta 263
            ||||| |||||||||||||||||||||||  | | ||||||||||||||| || |||||
Sbjct: 848 aagctcacatatggtacaaagctgcccttcgatcgaaggaacaaaccgggagccacagta 789

                                                                       
Query: 264 agggcacgagatgtccttttggccgcggtagatggggacatacgtcgagccacagacgac 323
            ||||| || |  ||||| ||||| |||||||| || |||||||| | ||||||||| ||
Sbjct: 788 cgggcaggaaacatccttctggccacggtagattggaacatacgtggcgccacagacaac 729

                                                                       
Query: 324 gaacggatttctgtagtcgtagttgagctcatggctgtcctgcttgccgttgcactgctg 383
            || |||||||||||||| ||||| ||||||  ||| |||| ||||||  ||||||||||
Sbjct: 728 aaatggatttctgtagtcatagttcagctcagagctatccttcttgccactgcactgctg 669

                           
Query: 384 ctgcacctgccgagcc 399
           ||||||||| ||||||
Sbjct: 668 ctgcacctgtcgagcc 653



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/43 (93%), Gaps = 2/43 (4%)
 Strand = Plus / Minus

                                                       
Query: 39   tacttattccttacacaatcagtaaacctcctggtaaaatata 81
            |||||||||||||||  |||||||||| |||||||||||||||
Sbjct: 1004 tacttattccttaca--atcagtaaacatcctggtaaaatata 964



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 100 gagactagaaagaatataggggagc 124
           |||||||||||||||||| ||||||
Sbjct: 944 gagactagaaagaatataagggagc 920
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>ref|XM_469513.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3657

 Score =  172 bits (87), Expect = 6e-40
 Identities = 210/251 (83%)
 Strand = Plus / Minus

                                                                        
Query: 149  atctcgtctgtgtaggggagcacaggaggcccgaggcgtccgcgccgaccaccgccagct 208
            |||||| ||| ||||||||||| |||||||| || || || || || ||||| || ||||
Sbjct: 3655 atctcgactgcgtaggggagcagaggaggcctgaagcatctgcaccaaccacggcaagct 3596

                                                                        
Query: 209  cgcatatggtacaaagctgcccttccgtggcaggaacaaaccgggatccgcagtaagggc 268
            | |||||||||||||||||||||||  | | ||||||||||||||| || ||||| ||||
Sbjct: 3595 cacatatggtacaaagctgcccttcgatcgaaggaacaaaccgggagccacagtacgggc 3536

                                                                        
Query: 269  acgagatgtccttttggccgcggtagatggggacatacgtcgagccacagacgacgaacg 328
            | || |  ||||| ||||| |||||||| || |||||||| | ||||||||| || || |
Sbjct: 3535 aggaaacatccttctggccacggtagattggaacatacgtggcgccacagacaacaaatg 3476

                                                                        
Query: 329  gatttctgtagtcgtagttgagctcatggctgtcctgcttgccgttgcactgctgctgca 388
            ||||||||||||| ||||| ||||||  ||| |||| ||||||  |||||||||||||||
Sbjct: 3475 gatttctgtagtcatagttcagctcagagctatccttcttgccactgcactgctgctgca 3416

                       
Query: 389  cctgccgagcc 399
            |||| ||||||
Sbjct: 3415 cctgtcgagcc 3405
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>ref|XM_469514.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3657

 Score =  159 bits (80), Expect = 9e-36
 Identities = 197/236 (83%)
 Strand = Plus / Minus

                                                                        
Query: 196  accaccgccagctcgcatatggtacaaagctgcccttccgtggcaggaacaaaccgggat 255
            ||||| || ||||| |||||||||||||||||||||||  | | ||||||||||||||||
Sbjct: 3608 accacggcaagctcacatatggtacaaagctgcccttcgatcgaaggaacaaaccgggat 3549

                                                                        
Query: 256  ccgcagtaagggcacgagatgtccttttggccgcggtagatggggacatacgtcgagcca 315
            || ||||| ||||| || |  ||||| ||||| |||||||| || ||||| || | ||||
Sbjct: 3548 ccacagtacgggcaggaaacatccttctggccacggtagattggaacatatgtggcgcca 3489

                                                                        
Query: 316  cagacgacgaacggatttctgtagtcgtagttgagctcatggctgtcctgcttgccgttg 375
            ||||| || || |||||||||||||| ||||| ||||||  ||| |||| ||||||  ||
Sbjct: 3488 cagacaacaaatggatttctgtagtcatagttcagctcagagctatccttcttgccactg 3429

                                                                    
Query: 376  cactgctgctgcacctgccgagccttcttcgcctggacctcgttggggctgttctc 431
            ||||||||||||||||| |||||| || | |||||| |||| || ||| |||||||
Sbjct: 3428 cactgctgctgcacctgtcgagccctccttgcctgggcctcattagggttgttctc 3373
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>dbj|AK058652.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-F03, full
            insert sequence
          Length = 1974

 Score =  151 bits (76), Expect = 2e-33
 Identities = 196/236 (83%)
 Strand = Plus / Minus

                                                                        
Query: 196  accaccgccagctcgcatatggtacaaagctgcccttccgtggcaggaacaaaccgggat 255
            ||||| || ||||| |||||||||||||||||||||||  | | ||||||||||||||||
Sbjct: 1678 accacggcaagctcacatatggtacaaagctgcccttcgatcgaaggaacaaaccgggat 1619

                                                                        
Query: 256  ccgcagtaagggcacgagatgtccttttggccgcggtagatggggacatacgtcgagcca 315
            || ||||| ||||| || |   |||| ||||| |||||||| || ||||| || | ||||
Sbjct: 1618 ccacagtacgggcaggaaacacccttctggccacggtagattggaacatatgtggcgcca 1559

                                                                        
Query: 316  cagacgacgaacggatttctgtagtcgtagttgagctcatggctgtcctgcttgccgttg 375
            ||||| || || |||||||||||||| ||||| ||||||  ||| |||| ||||||  ||
Sbjct: 1558 cagacaacaaatggatttctgtagtcatagttcagctcagagctatccttcttgccactg 1499

                                                                    
Query: 376  cactgctgctgcacctgccgagccttcttcgcctggacctcgttggggctgttctc 431
            ||||||||||||||||| |||||| || | |||||| |||| || ||| |||||||
Sbjct: 1498 cactgctgctgcacctgtcgagccctccttgcctgggcctcattagggttgttctc 1443
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>ref|XM_450153.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1736

 Score =  145 bits (73), Expect = 1e-31
 Identities = 193/233 (82%)
 Strand = Plus / Minus

                                                                        
Query: 160  gtaggggagcacaggaggcccgaggcgtccgcgccgaccaccgccagctcgcatatggta 219
            ||||||||||| |||||||| || || || || || ||||| || ||||| |||||||||
Sbjct: 1502 gtaggggagcagaggaggcctgaagcatctgcaccaaccacagcaagctcacatatggta 1443

                                                                        
Query: 220  caaagctgcccttccgtggcaggaacaaaccgggatccgcagtaagggcacgagatgtcc 279
            ||||||||||||||  ||| |||||||||||||||||| ||||| ||||| || |  |||
Sbjct: 1442 caaagctgcccttcgatggaaggaacaaaccgggatccacagtacgggcaggaaacatcc 1383

                                                                        
Query: 280  ttttggccgcggtagatggggacatacgtcgagccacagacgacgaacggatttctgtag 339
            || ||||| ||||| || || ||||| || |  ||||||||||| || ||||||||||||
Sbjct: 1382 ttctggccacggtaaattggaacatatgtggcaccacagacgacaaatggatttctgtag 1323

                                                                 
Query: 340  tcgtagttgagctcatggctgtcctgcttgccgttgcactgctgctgcacctg 392
            || ||||| ||||||  ||| |||| ||| ||  ||||||| |||||||||||
Sbjct: 1322 tcatagttcagctcacagctatccttctttccactgcactgttgctgcacctg 1270
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score =  145 bits (73), Expect = 1e-31
 Identities = 193/233 (82%)
 Strand = Plus / Plus

                                                                           
Query: 160     gtaggggagcacaggaggcccgaggcgtccgcgccgaccaccgccagctcgcatatggta 219
               ||||||||||| |||||||| || || || || || ||||| || ||||| |||||||||
Sbjct: 2074206 gtaggggagcagaggaggcctgaagcatctgcaccaaccacagcaagctcacatatggta 2074265

                                                                           
Query: 220     caaagctgcccttccgtggcaggaacaaaccgggatccgcagtaagggcacgagatgtcc 279
               ||||||||||||||  ||| |||||||||||||||||| ||||| ||||| || |  |||
Sbjct: 2074266 caaagctgcccttcgatggaaggaacaaaccgggatccacagtacgggcaggaaacatcc 2074325

                                                                           
Query: 280     ttttggccgcggtagatggggacatacgtcgagccacagacgacgaacggatttctgtag 339
               || ||||| ||||| || || ||||| || |  ||||||||||| || ||||||||||||
Sbjct: 2074326 ttctggccacggtaaattggaacatatgtggcaccacagacgacaaatggatttctgtag 2074385

                                                                    
Query: 340     tcgtagttgagctcatggctgtcctgcttgccgttgcactgctgctgcacctg 392
               || ||||| ||||||  ||| |||| ||| ||  ||||||| |||||||||||
Sbjct: 2074386 tcatagttcagctcacagctatccttctttccactgcactgttgctgcacctg 2074438
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>dbj|AP005680.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1352_A10
          Length = 111655

 Score =  145 bits (73), Expect = 1e-31
 Identities = 193/233 (82%)
 Strand = Plus / Plus

                                                                          
Query: 160    gtaggggagcacaggaggcccgaggcgtccgcgccgaccaccgccagctcgcatatggta 219
              ||||||||||| |||||||| || || || || || ||||| || ||||| |||||||||
Sbjct: 109573 gtaggggagcagaggaggcctgaagcatctgcaccaaccacagcaagctcacatatggta 109632

                                                                          
Query: 220    caaagctgcccttccgtggcaggaacaaaccgggatccgcagtaagggcacgagatgtcc 279
              ||||||||||||||  ||| |||||||||||||||||| ||||| ||||| || |  |||
Sbjct: 109633 caaagctgcccttcgatggaaggaacaaaccgggatccacagtacgggcaggaaacatcc 109692

                                                                          
Query: 280    ttttggccgcggtagatggggacatacgtcgagccacagacgacgaacggatttctgtag 339
              || ||||| ||||| || || ||||| || |  ||||||||||| || ||||||||||||
Sbjct: 109693 ttctggccacggtaaattggaacatatgtggcaccacagacgacaaatggatttctgtag 109752

                                                                   
Query: 340    tcgtagttgagctcatggctgtcctgcttgccgttgcactgctgctgcacctg 392
              || ||||| ||||||  ||| |||| ||| ||  ||||||| |||||||||||
Sbjct: 109753 tcatagttcagctcacagctatccttctttccactgcactgttgctgcacctg 109805
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>dbj|AK105672.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-A08, full
            insert sequence
          Length = 3045

 Score =  145 bits (73), Expect = 1e-31
 Identities = 193/233 (82%)
 Strand = Plus / Minus

                                                                        
Query: 160  gtaggggagcacaggaggcccgaggcgtccgcgccgaccaccgccagctcgcatatggta 219
            ||||||||||| |||||||| || || || || || ||||| || ||||| |||||||||
Sbjct: 2567 gtaggggagcagaggaggcctgaagcatctgcaccaaccacagcaagctcacatatggta 2508

                                                                        
Query: 220  caaagctgcccttccgtggcaggaacaaaccgggatccgcagtaagggcacgagatgtcc 279
            ||||||||||||||  ||| |||||||||||||||||| ||||| ||||| || |  |||
Sbjct: 2507 caaagctgcccttcgatggaaggaacaaaccgggatccacagtacgggcaggaaacatcc 2448

                                                                        
Query: 280  ttttggccgcggtagatggggacatacgtcgagccacagacgacgaacggatttctgtag 339
            || ||||| ||||| || || ||||| || |  ||||||||||| || ||||||||||||
Sbjct: 2447 ttctggccacggtaaattggaacatatgtggcaccacagacgacaaatggatttctgtag 2388

                                                                 
Query: 340  tcgtagttgagctcatggctgtcctgcttgccgttgcactgctgctgcacctg 392
            || ||||| ||||||  ||| |||| ||| ||  ||||||| |||||||||||
Sbjct: 2387 tcatagttcagctcacagctatccttctttccactgcactgttgctgcacctg 2335
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>dbj|AK103786.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033145I16, full
            insert sequence
          Length = 4284

 Score =  145 bits (73), Expect = 1e-31
 Identities = 193/233 (82%)
 Strand = Plus / Minus

                                                                        
Query: 160  gtaggggagcacaggaggcccgaggcgtccgcgccgaccaccgccagctcgcatatggta 219
            ||||||||||| |||||||| || || || || || ||||| || ||||| |||||||||
Sbjct: 3871 gtaggggagcagaggaggcctgaagcatctgcaccaaccacagcaagctcacatatggta 3812

                                                                        
Query: 220  caaagctgcccttccgtggcaggaacaaaccgggatccgcagtaagggcacgagatgtcc 279
            ||||||||||||||  ||| |||||||||||||||||| ||||| ||||| || |  |||
Sbjct: 3811 caaagctgcccttcgatggaaggaacaaaccgggatccacagtacgggcaggaaacatcc 3752

                                                                        
Query: 280  ttttggccgcggtagatggggacatacgtcgagccacagacgacgaacggatttctgtag 339
            || ||||| ||||| || || ||||| || |  ||||||||||| || ||||||||||||
Sbjct: 3751 ttctggccacggtaaattggaacatatgtggcaccacagacgacaaatggatttctgtag 3692

                                                                 
Query: 340  tcgtagttgagctcatggctgtcctgcttgccgttgcactgctgctgcacctg 392
            || ||||| ||||||  ||| |||| ||| ||  ||||||| |||||||||||
Sbjct: 3691 tcatagttcagctcacagctatccttctttccactgcactgttgctgcacctg 3639
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>dbj|AK058402.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-015-B07, full
            insert sequence
          Length = 1736

 Score =  145 bits (73), Expect = 1e-31
 Identities = 193/233 (82%)
 Strand = Plus / Minus

                                                                        
Query: 160  gtaggggagcacaggaggcccgaggcgtccgcgccgaccaccgccagctcgcatatggta 219
            ||||||||||| |||||||| || || || || || ||||| || ||||| |||||||||
Sbjct: 1502 gtaggggagcagaggaggcctgaagcatctgcaccaaccacagcaagctcacatatggta 1443

                                                                        
Query: 220  caaagctgcccttccgtggcaggaacaaaccgggatccgcagtaagggcacgagatgtcc 279
            ||||||||||||||  ||| |||||||||||||||||| ||||| ||||| || |  |||
Sbjct: 1442 caaagctgcccttcgatggaaggaacaaaccgggatccacagtacgggcaggaaacatcc 1383

                                                                        
Query: 280  ttttggccgcggtagatggggacatacgtcgagccacagacgacgaacggatttctgtag 339
            || ||||| ||||| || || ||||| || |  ||||||||||| || ||||||||||||
Sbjct: 1382 ttctggccacggtaaattggaacatatgtggcaccacagacgacaaatggatttctgtag 1323

                                                                 
Query: 340  tcgtagttgagctcatggctgtcctgcttgccgttgcactgctgctgcacctg 392
            || ||||| ||||||  ||| |||| ||| ||  ||||||| |||||||||||
Sbjct: 1322 tcatagttcagctcacagctatccttctttccactgcactgttgctgcacctg 1270
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>gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complete sequence
          Length = 114996

 Score =  111 bits (56), Expect = 2e-21
 Identities = 161/196 (82%)
 Strand = Plus / Plus

                                                                        
Query: 157  tgtgtaggggagcacaggaggcccgaggcgtccgcgccgaccaccgccagctcgcatatg 216
            |||||||||||||| |||||||| ||||||||||| ||||||||||  ||||||||||||
Sbjct: 958  tgtgtaggggagcagaggaggcctgaggcgtccgccccgaccaccgagagctcgcatatg 1017

                                                                        
Query: 217  gtacaaagctgcccttccgtggcaggaacaaaccgggatccgcagtaagggcacgagatg 276
             | || ||||| || ||    |  || || ||||||||  ||||||| ||||| |||| |
Sbjct: 1018 ctgcacagctgaccctcgactgagggcacgaaccgggacgcgcagtaggggcaggagacg 1077

                                                                        
Query: 277  tccttttggccgcggtagatggggacatacgtcgagccacagacgacgaacggatttctg 336
            ||||| || ||||||||||| |||||| | || |  || |||||||||||||| ||||||
Sbjct: 1078 tccttctgcccgcggtagatcgggacaaaggttgccccgcagacgacgaacgggtttctg 1137

                            
Query: 337  tagtcgtagttgagct 352
             |||||||||| ||||
Sbjct: 1138 aagtcgtagttcagct 1153
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>gb|AY104039.1| Zea mays PCO096800 mRNA sequence
          Length = 1207

 Score =  101 bits (51), Expect = 2e-18
 Identities = 126/151 (83%)
 Strand = Plus / Minus

                                                                       
Query: 155 tctgtgtaggggagcacaggaggcccgaggcgtccgcgccgaccaccgccagctcgcata 214
           |||| ||||||||||| |  ||||| |||||||| || || || |  || ||||| ||||
Sbjct: 885 tctgcgtaggggagcagaccaggcctgaggcgtctgccccaactatggcaagctcacata 826

                                                                       
Query: 215 tggtacaaagctgcccttccgtggcaggaacaaaccgggatccgcagtaagggcacgaga 274
           |||||||||||||||||||  ||| |||| ||||||||||||| ||||| ||||| || |
Sbjct: 825 tggtacaaagctgcccttcgatggaaggagcaaaccgggatccacagtatgggcaagaaa 766

                                          
Query: 275 tgtccttttggccgcggtagatggggacata 305
           | ||||||||||| |||||||| || |||||
Sbjct: 765 tatccttttggccacggtagattggaacata 735
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>gb|AY765263.1| Pseudomonas aeruginosa strain MSH type II pyoverdine region, complete
             sequence
          Length = 50406

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 175   aggcccgaggcgtccgcgccg 195
             |||||||||||||||||||||
Sbjct: 21409 aggcccgaggcgtccgcgccg 21429
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>ref|XM_752598.1| Ustilago maydis 521 hypothetical protein (UM01544.1) partial mRNA
          Length = 5808

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 392  gccgagccttcttcgcctgg 411
            ||||||||||||||||||||
Sbjct: 2957 gccgagccttcttcgcctgg 2938
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>gb|AC122926.2| Mus musculus BAC clone RP23-10E15 from 6, complete sequence
          Length = 193055

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 32    actattatacttattcctta 51
             ||||||||||||||||||||
Sbjct: 76555 actattatacttattcctta 76536
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>gb|DQ115816.1| Cyanobacteria phage AS-1 contig_9 genomic sequence
          Length = 1772

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 188  ccgcgccgaccaccgccagc 207
            ||||||||||||||||||||
Sbjct: 1218 ccgcgccgaccaccgccagc 1237
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>gb|AF540993.1| Pseudomonas aeruginosa isolate 2-164 pyoverdin biosynthetic locus,
             partial sequence
          Length = 77740

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 175   aggcccgaggcgtccgcgcc 194
             ||||||||||||||||||||
Sbjct: 44381 aggcccgaggcgtccgcgcc 44400
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>gb|AF540992.1| Pseudomonas aeruginosa isolate 1-60 pyoverdin biosynthetic locus,
            partial sequence
          Length = 38516

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 175  aggcccgaggcgtccgcgcc 194
            ||||||||||||||||||||
Sbjct: 9918 aggcccgaggcgtccgcgcc 9937
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>emb|CR847206.1| Takifugu rubripes DNA, highly conserved vertebrate non-coding
           sequence, element ID CNE1102
          Length = 310

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 185 cgtccgcgccgaccaccgcc 204
           ||||||||||||||||||||
Sbjct: 170 cgtccgcgccgaccaccgcc 189


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,158,876
Number of Sequences: 3902068
Number of extensions: 3158876
Number of successful extensions: 57238
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57125
Number of HSP's gapped (non-prelim): 102
length of query: 435
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 413
effective length of database: 17,147,199,772
effective search space: 7081793505836
effective search space used: 7081793505836
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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