ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl29g08 |
|---|---|
| Clone Library Name | barley_pub |
>R1AB_IBVBC (Q91QT2) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p87; p195 (EC 3.4.22.-) (Papain-like proteinase) (PL-PRO); Peptide HD2 (p41); 3C-like proteinase (EC 3.4.22.-) (3CL- Length = 6629 Score = 30.4 bits (67), Expect = 1.1 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 15/55 (27%) Frame = -2 Query: 151 NPTVVAASFLFNAVKQFLVDLEPP---------------YFFISSLTSIVHAIIL 32 NP + ASFL A Q VDL+PP +FI + SIV ++L Sbjct: 3719 NPNLKVASFLNEAGNQIYVDLDPPCKFGMKVGVKVEVVYLYFIKNTRSIVRGMVL 3773
>R1AB_IBVB (P27920) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p87; p195 (EC 3.4.22.-) (Papain-like proteinase) (PL-PRO); Peptide HD2 (p41); 3C-like proteinase (EC 3.4.22.-) (3CL-P Length = 6629 Score = 30.4 bits (67), Expect = 1.1 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 15/55 (27%) Frame = -2 Query: 151 NPTVVAASFLFNAVKQFLVDLEPP---------------YFFISSLTSIVHAIIL 32 NP + ASFL A Q VDL+PP +FI + SIV ++L Sbjct: 3719 NPNLKVASFLNEAGNQIYVDLDPPCKFGMKVGVKVEVVYLYFIKNTRSIVRGMVL 3773
>FLHB_BUCAI (P57334) Flagellar biosynthetic protein flhB| Length = 383 Score = 29.3 bits (64), Expect = 2.5 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 1/85 (1%) Frame = -2 Query: 256 FLVDLFVVLAFHLVKAQGISINY-SIWLCVSWFSRWNPTVVAASFLFNAVKQFLVDLEPP 80 FL+ L +V+ + GIS+N+ S+ L FS+ NP F+ K+ Sbjct: 96 FLISLLIVIIIPPILFSGISLNFRSLTLN---FSKLNP--------FHGFKRLFSFQIIV 144 Query: 79 YFFISSLTSIVHAIILKWNVQFNFS 5 FF L + +II W +QF+FS Sbjct: 145 EFFKIILKLFIVSIISFWYLQFSFS 169
>SUT1_STYHA (P53391) High affinity sulphate transporter 1| Length = 667 Score = 28.5 bits (62), Expect = 4.3 Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Frame = -2 Query: 214 KAQGISINYSIWLCVSWFSRWNPTVVAASFL-FNAVKQFLVDLEPPYFFISSLTSIVHAI 38 K IS+ S+W V W ++ SFL F + +++ F++S+++ ++ I Sbjct: 249 KTDIISVMRSVWTHVHHGWNWETILIGLSFLIFLLITKYIAKKNKKLFWVSAISPMISVI 308 Query: 37 I 35 + Sbjct: 309 V 309
>SUT2_STYHA (P53392) High affinity sulphate transporter 2| Length = 662 Score = 28.1 bits (61), Expect = 5.6 Identities = 12/57 (21%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Frame = -2 Query: 202 ISINYSIWLCVSWFSRWNPTVVAASFL-FNAVKQFLVDLEPPYFFISSLTSIVHAII 35 +S+ +S+W V W ++ SFL F + +++ F++S+++ ++ I+ Sbjct: 248 VSVMHSVWSNVHHGWNWETILIGLSFLIFLLITKYIAKKNKKLFWVSAISPMICVIV 304
>T2R46_PAPHA (Q646G0) Taste receptor type 2 member 46 (T2R46)| Length = 309 Score = 28.1 bits (61), Expect = 5.6 Identities = 13/37 (35%), Positives = 22/37 (59%) Frame = -2 Query: 232 LAFHLVKAQGISINYSIWLCVSWFSRWNPTVVAASFL 122 LAFH V+ + S Y++W+ + FS W T ++ +L Sbjct: 73 LAFHSVEVR--STAYNVWVVTNHFSNWLSTSLSMFYL 107
>TLR11_MOUSE (Q6R5P0) Toll-like receptor 11 precursor| Length = 926 Score = 27.7 bits (60), Expect = 7.4 Identities = 11/42 (26%), Positives = 22/42 (52%) Frame = -2 Query: 154 WNPTVVAASFLFNAVKQFLVDLEPPYFFISSLTSIVHAIILK 29 W PT+++ + QF++ P+ F+ +LT ++LK Sbjct: 476 WPPTLLSLEIQAESCIQFMIHSGQPFLFLENLTLETSILLLK 517
>CDPK1_PLAYO (Q7RAH3) Calcium-dependent protein kinase 1 (EC 2.7.11.1)| Length = 534 Score = 27.7 bits (60), Expect = 7.4 Identities = 12/31 (38%), Positives = 21/31 (67%) Frame = +2 Query: 209 RFHQMESQNNKKVNQKTLAGSFSHLQQFHGS 301 R+ + + N K +QKTL G+ S++++F GS Sbjct: 321 RWIKKYANNINKSDQKTLCGALSNMRKFEGS 351
>YCF2_PINKO (Q85WV5) Protein ycf2| Length = 1320 Score = 27.3 bits (59), Expect = 9.6 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = -2 Query: 73 FISSLTSIVHAIILKWNVQFNFS 5 F+S L I H I+LKWN+ + S Sbjct: 335 FVSILQDIKHNIMLKWNILWELS 357
>PPS1_YEAST (P38148) Dual specificity protein phosphatase PPS1 (EC 3.1.3.48)| (EC 3.1.3.16) Length = 807 Score = 27.3 bits (59), Expect = 9.6 Identities = 12/48 (25%), Positives = 28/48 (58%) Frame = -2 Query: 202 ISINYSIWLCVSWFSRWNPTVVAASFLFNAVKQFLVDLEPPYFFISSL 59 + ++ S +C++ R+ +A+++LF V++ V ++P FF+ L Sbjct: 727 VGVSRSATVCIAECMRYLQCDLASAYLFVRVRRLNVIIQPNLFFVYEL 774
>TRPM6_MOUSE (Q8CIR4) Transient receptor potential cation channel subfamily M| member 6 (EC 2.7.11.1) (Channel kinase 2) (Melastatin-related TRP cation channel 6) Length = 2028 Score = 27.3 bits (59), Expect = 9.6 Identities = 10/27 (37%), Positives = 16/27 (59%) Frame = +2 Query: 215 HQMESQNNKKVNQKTLAGSFSHLQQFH 295 H E Q +++ Q+T A SH++Q H Sbjct: 1318 HVREEQEEREMEQRTTASGISHVRQAH 1344
>CDPK1_PLAFK (P62343) Calcium-dependent protein kinase 1 (EC 2.7.11.1) (PfCPK)| (PfCDPK1) Length = 523 Score = 27.3 bits (59), Expect = 9.6 Identities = 11/25 (44%), Positives = 18/25 (72%) Frame = +2 Query: 227 SQNNKKVNQKTLAGSFSHLQQFHGS 301 + N K +QKTL G+ S++++F GS Sbjct: 328 ANNINKSDQKTLCGALSNMRKFEGS 352
>CDPK1_PLAF7 (P62344) Calcium-dependent protein kinase 1 (EC 2.7.11.1)| Length = 523 Score = 27.3 bits (59), Expect = 9.6 Identities = 11/25 (44%), Positives = 18/25 (72%) Frame = +2 Query: 227 SQNNKKVNQKTLAGSFSHLQQFHGS 301 + N K +QKTL G+ S++++F GS Sbjct: 328 ANNINKSDQKTLCGALSNMRKFEGS 352 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,715,933 Number of Sequences: 219361 Number of extensions: 695758 Number of successful extensions: 1595 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 1569 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1595 length of database: 80,573,946 effective HSP length: 89 effective length of database: 61,050,817 effective search space used: 1465219608 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
