ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl29g06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_471133.1| Oryza sativa (japonica cultivar-group), predic... 54 4e-04
2emb|BX842608.1|OSJN00298 Oryza sativa genomic DNA, chromosome 4,... 54 4e-04
3emb|AL662964.3|OSJN00161 Oryza sativa genomic DNA, chromosome 4,... 54 4e-04
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
5dbj|AK105313.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 4e-04
6gb|AC150425.2| Branchiostoma floridae clone CH302-81E17, complet... 44 0.40
7gb|AC018665.9| Homo sapiens chromosome 17, clone RP11-449J21, co... 44 0.40
8gb|AC015801.25|AC015801 Homo sapiens chromosome 17, clone RP11-8... 44 0.40
9gb|DQ372897.1| Lycopersicon esculentum green ripe gene, complete... 42 1.6
10gb|AC084773.5| Homo sapiens chromosome 15, clone RP11-137H12, co... 42 1.6
11gb|AC171135.2| Helobdella robusta clone CH306-1A6, complete sequ... 42 1.6
12gb|AC112976.8| Mus musculus chromosome 7, clone RP24-475E2, comp... 42 1.6
13gb|AC145785.2| Xenopus tropicalis clone CH216-102H4, complete se... 40 6.2
14gb|AC125125.4| Mus musculus BAC clone RP24-274E6 from chromosome... 40 6.2
15ref|XM_673875.1| Plasmodium berghei strain ANKA hypothetical pro... 40 6.2
16gb|AF026208.1| Caenorhabditis elegans cosmid F52D1, complete seq... 40 6.2
17gb|AC092963.4| Homo sapiens 3q BAC RP11-396A13 (Roswell Park Can... 40 6.2
18gb|AC156546.7| Mus musculus chromosome 18, clone RP23-131O22, co... 40 6.2
19gb|AC055874.8| Homo sapiens chromosome 15, clone RP11-489D6, com... 40 6.2
20gb|AC105314.5| Homo sapiens BAC clone RP11-312H15 from 4, comple... 40 6.2
21gb|AC105753.2| Homo sapiens chromosome 3 clone RP11-189A1, compl... 40 6.2
22gb|AC009520.16| Homo sapiens 3 BAC RP11-392H18 (Roswell Park Can... 40 6.2
23gb|AC099775.2| Homo sapiens chromosome 3 clone RP11-169G24, comp... 40 6.2
24emb|BX537350.25| Zebrafish DNA sequence from clone CH211-257F16 ... 40 6.2
25ref|NM_074661.2| Caenorhabditis elegans F44G3.7 (F44G3.7) mRNA, ... 40 6.2
26gb|AC148667.1| Macaca mulatta Major Histocompatibility Complex B... 40 6.2
27dbj|AB128049.1| Macaca mulatta genes, MHC class I region, partia... 40 6.2
28gb|AC103726.5| Homo sapiens chromosome 8, clone RP11-737F9, comp... 40 6.2
29gb|AF043704.1| Caenorhabditis elegans cosmid W01B11, complete se... 40 6.2
30dbj|AB005231.2| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 6.2
31ref|XM_312179.2| Anopheles gambiae str. PEST ENSANGP00000002662 ... 40 6.2
32ref|XM_563394.1| Anopheles gambiae str. PEST ENSANGP00000028094 ... 40 6.2
33emb|AL110490.1|CEY48B6A Caenorhabditis elegans YAC Y48B6A, compl... 40 6.2
34emb|CR392343.29| Zebrafish DNA sequence from clone CH211-195G6 i... 40 6.2
35gb|AC154135.3| Tribolium castaneum BAC T.cast_C40D19 (Clemson U... 40 6.2
36dbj|AP005887.2| Homo sapiens genomic DNA, chromosome 8q24, clone... 40 6.2
37emb|Z83109.1|CEF44G3 Caenorhabditis elegans Cosmid F44G3, comple... 40 6.2 
>ref|XM_471133.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 4179

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                       
Query: 361  ccgcacgcaggcatcccatgccctggccatcgcctcaatcgac 403
            |||||||||| ||||||| ||| ||||||||||||| ||||||
Sbjct: 2865 ccgcacgcagccatcccacgccatggccatcgcctcgatcgac 2823
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>emb|BX842608.1|OSJN00298 Oryza sativa genomic DNA, chromosome 4, BAC clone: B1340F09, complete
             sequence
          Length = 149449

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                        
Query: 361   ccgcacgcaggcatcccatgccctggccatcgcctcaatcgac 403
             |||||||||| ||||||| ||| ||||||||||||| ||||||
Sbjct: 89535 ccgcacgcagccatcccacgccatggccatcgcctcgatcgac 89493
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>emb|AL662964.3|OSJN00161 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027H09,
             complete sequence
          Length = 155672

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                        
Query: 361   ccgcacgcaggcatcccatgccctggccatcgcctcaatcgac 403
             |||||||||| ||||||| ||| ||||||||||||| ||||||
Sbjct: 41845 ccgcacgcagccatcccacgccatggccatcgcctcgatcgac 41803
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                          
Query: 361     ccgcacgcaggcatcccatgccctggccatcgcctcaatcgac 403
               |||||||||| ||||||| ||| ||||||||||||| ||||||
Sbjct: 1746583 ccgcacgcagccatcccacgccatggccatcgcctcgatcgac 1746541
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>dbj|AK105313.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-117-D07, full
            insert sequence
          Length = 3214

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                       
Query: 361  ccgcacgcaggcatcccatgccctggccatcgcctcaatcgac 403
            |||||||||| ||||||| ||| ||||||||||||| ||||||
Sbjct: 2930 ccgcacgcagccatcccacgccatggccatcgcctcgatcgac 2888
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>gb|AC150425.2| Branchiostoma floridae clone CH302-81E17, complete sequence
          Length = 124426

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 10    aaattttcaattttcaaacaca 31
             ||||||||||||||||||||||
Sbjct: 27903 aaattttcaattttcaaacaca 27924
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>gb|AC018665.9| Homo sapiens chromosome 17, clone RP11-449J21, complete sequence
          Length = 184393

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 47    ttttcttgttcctcatttcaga 68
             ||||||||||||||||||||||
Sbjct: 24641 ttttcttgttcctcatttcaga 24662
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>gb|AC015801.25|AC015801 Homo sapiens chromosome 17, clone RP11-854A13, complete sequence
          Length = 185351

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 47     ttttcttgttcctcatttcaga 68
              ||||||||||||||||||||||
Sbjct: 142218 ttttcttgttcctcatttcaga 142239
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>gb|DQ372897.1| Lycopersicon esculentum green ripe gene, complete cds
          Length = 16234

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 9    aaaattttcaattttcaaaca 29
            |||||||||||||||||||||
Sbjct: 3363 aaaattttcaattttcaaaca 3343
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>gb|AC084773.5| Homo sapiens chromosome 15, clone RP11-137H12, complete sequence
          Length = 167421

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 13     ttttcaattttcaaacacatgtcta 37
              ||||||||||||||||| |||||||
Sbjct: 118572 ttttcaattttcaaacatatgtcta 118596
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>gb|AC171135.2| Helobdella robusta clone CH306-1A6, complete sequence
          Length = 84513

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 9     aaaattttcaattttcaaaca 29
             |||||||||||||||||||||
Sbjct: 42098 aaaattttcaattttcaaaca 42078
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>gb|AC112976.8| Mus musculus chromosome 7, clone RP24-475E2, complete sequence
          Length = 167823

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 12    attttcaattttcaaacacatgtct 36
             |||||||||||| ||||||||||||
Sbjct: 99197 attttcaattttaaaacacatgtct 99221
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>gb|AC145785.2| Xenopus tropicalis clone CH216-102H4, complete sequence
          Length = 151691

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 154    tttacatctacaaatatgccccag 177
              ||||||| ||||||||||||||||
Sbjct: 132063 tttacatttacaaatatgccccag 132086
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>gb|AC125125.4| Mus musculus BAC clone RP24-274E6 from chromosome 8, complete sequence
          Length = 180801

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 8      gaaaattttcaattttcaaa 27
              ||||||||||||||||||||
Sbjct: 130551 gaaaattttcaattttcaaa 130532
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>ref|XM_673875.1| Plasmodium berghei strain ANKA hypothetical protein (PB000372.02.0)
           partial mRNA
          Length = 2295

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 244 taatttctttcctataatct 263
           ||||||||||||||||||||
Sbjct: 784 taatttctttcctataatct 765
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>gb|AF026208.1| Caenorhabditis elegans cosmid F52D1, complete sequence
          Length = 29138

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 4    ctcggaaaattttcaattttcaaa 27
            |||||||||||||||| |||||||
Sbjct: 7360 ctcggaaaattttcaaatttcaaa 7337
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>gb|AC092963.4| Homo sapiens 3q BAC RP11-396A13 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 145390

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 20    ttttcaaacacatgtctaca 39
             ||||||||||||||||||||
Sbjct: 43351 ttttcaaacacatgtctaca 43332
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>gb|AC156546.7| Mus musculus chromosome 18, clone RP23-131O22, complete sequence
          Length = 209678

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 77     ttgcacaacaaatttcacat 96
              ||||||||||||||||||||
Sbjct: 129456 ttgcacaacaaatttcacat 129475
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>gb|AC055874.8| Homo sapiens chromosome 15, clone RP11-489D6, complete sequence
          Length = 180647

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 17    caattttcaaacacatgtct 36
             ||||||||||||||||||||
Sbjct: 69044 caattttcaaacacatgtct 69025
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>gb|AC105314.5| Homo sapiens BAC clone RP11-312H15 from 4, complete sequence
          Length = 193665

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 62    tttcagagtctacaattgca 81
             ||||||||||||||||||||
Sbjct: 22574 tttcagagtctacaattgca 22593
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>gb|AC105753.2| Homo sapiens chromosome 3 clone RP11-189A1, complete sequence
          Length = 146753

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 8     gaaaattttcaattttcaaa 27
             ||||||||||||||||||||
Sbjct: 19599 gaaaattttcaattttcaaa 19580
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>gb|AC009520.16| Homo sapiens 3 BAC RP11-392H18 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 161517

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 244    taatttctttcctataatct 263
              ||||||||||||||||||||
Sbjct: 131722 taatttctttcctataatct 131741
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>gb|AC099775.2| Homo sapiens chromosome 3 clone RP11-169G24, complete sequence
          Length = 181443

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 8     gaaaattttcaattttcaaa 27
             ||||||||||||||||||||
Sbjct: 58688 gaaaattttcaattttcaaa 58669
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>emb|BX537350.25| Zebrafish DNA sequence from clone CH211-257F16 in linkage group 1,
             complete sequence
          Length = 186493

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 135   atcgcttccaaaacaacactttac 158
             |||| |||||||||||||||||||
Sbjct: 17734 atcgtttccaaaacaacactttac 17711



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 135   atcgcttccaaaacaacactttac 158
             |||| |||||||||||||||||||
Sbjct: 15364 atcgtttccaaaacaacactttac 15341
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>ref|NM_074661.2| Caenorhabditis elegans F44G3.7 (F44G3.7) mRNA, complete cds
          Length = 2121

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 4    ctcggaaaattttcaatttt 23
            ||||||||||||||||||||
Sbjct: 1179 ctcggaaaattttcaatttt 1198
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>gb|AC148667.1| Macaca mulatta Major Histocompatibility Complex BAC MMU025A04, complete
             sequence
          Length = 218267

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 154   tttacatctacaaatatgcc 173
             ||||||||||||||||||||
Sbjct: 85628 tttacatctacaaatatgcc 85647
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>dbj|AB128049.1| Macaca mulatta genes, MHC class I region, partial and complete cds
          Length = 3284914

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 154     tttacatctacaaatatgcc 173
               ||||||||||||||||||||
Sbjct: 2348283 tttacatctacaaatatgcc 2348264
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>gb|AC103726.5| Homo sapiens chromosome 8, clone RP11-737F9, complete sequence
          Length = 143480

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 291   tctcccacccaccaaatatc 310
             ||||||||||||||||||||
Sbjct: 48983 tctcccacccaccaaatatc 49002
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>gb|AF043704.1| Caenorhabditis elegans cosmid W01B11, complete sequence
          Length = 36999

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 2     aactcggaaaattttcaattttca 25
             ||||| ||||||||||||||||||
Sbjct: 29381 aactccgaaaattttcaattttca 29404
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>dbj|AB005231.2| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MBB18
          Length = 79537

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 8     gaaaattttcaattttcaaa 27
             ||||||||||||||||||||
Sbjct: 72052 gaaaattttcaattttcaaa 72071
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>ref|XM_312179.2| Anopheles gambiae str. PEST ENSANGP00000002662 (ENSANGG00000002208),
            partial mRNA
          Length = 8892

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 329  ccgtgccggtgcgcaaattg 348
            ||||||||||||||||||||
Sbjct: 1669 ccgtgccggtgcgcaaattg 1650
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>ref|XM_563394.1| Anopheles gambiae str. PEST ENSANGP00000028094 (ENSANGG00000002208),
            partial mRNA
          Length = 9180

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 329  ccgtgccggtgcgcaaattg 348
            ||||||||||||||||||||
Sbjct: 1696 ccgtgccggtgcgcaaattg 1677
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>emb|AL110490.1|CEY48B6A Caenorhabditis elegans YAC Y48B6A, complete sequence
          Length = 101295

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 4     ctcggaaaattttcaattttcaaa 27
             |||||||||||||||| |||||||
Sbjct: 46328 ctcggaaaattttcaactttcaaa 46305
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>emb|CR392343.29| Zebrafish DNA sequence from clone CH211-195G6 in linkage group 22,
             complete sequence
          Length = 194465

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 135   atcgcttccaaaacaacactttac 158
             |||| |||||||||||||||||||
Sbjct: 85366 atcgtttccaaaacaacactttac 85389
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>gb|AC154135.3| Tribolium castaneum  BAC T.cast_C40D19 (Clemson University Genomics
              Institute Tribolium castaneum BAC Library (Red Flour
              Beetle)) complete sequence
          Length = 130926

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 9      aaaattttcaattttcaaac 28
              ||||||||||||||||||||
Sbjct: 103015 aaaattttcaattttcaaac 102996
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>dbj|AP005887.2| Homo sapiens genomic DNA, chromosome 8q24, clone: KB1252A6, complete
             sequence
          Length = 149431

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 291   tctcccacccaccaaatatc 310
             ||||||||||||||||||||
Sbjct: 37819 tctcccacccaccaaatatc 37800
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>emb|Z83109.1|CEF44G3 Caenorhabditis elegans Cosmid F44G3, complete sequence
          Length = 37176

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 4     ctcggaaaattttcaatttt 23
             ||||||||||||||||||||
Sbjct: 32621 ctcggaaaattttcaatttt 32602


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,306,174
Number of Sequences: 3902068
Number of extensions: 4306174
Number of successful extensions: 87579
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87441
Number of HSP's gapped (non-prelim): 138
length of query: 462
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 440
effective length of database: 17,147,199,772
effective search space: 7544767899680
effective search space used: 7544767899680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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