ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl29g04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_186147.1| Oryza sativa (japonica cultivar-group), mRNA 72 1e-09
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 72 1e-09
3dbj|AP004342.5| Oryza sativa (japonica cultivar-group) genomic D... 72 1e-09
4dbj|AK121984.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 1e-09
5dbj|AK103166.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 1e-09
6dbj|AK064359.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 1e-09
7gb|AC008747.5|AC008747 Homo sapiens chromosome 19 clone CTD-2588... 44 0.30
8gb|AC117221.3| Mus musculus BAC clone RP23-347F2 from 1, complet... 40 4.6
9emb|CR524821.5| Zebrafish DNA sequence from clone CH211-192F15 i... 40 4.6
10gb|AC092832.7| Homo sapiens X BAC RP11-494I9 (Roswell Park Cance... 40 4.6
11gb|AC016450.10| Homo sapiens chromosome 11, clone RP11-361K15, c... 40 4.6
12gb|AC068107.6| Homo sapiens chromosome 11, clone RP11-807F21, co... 40 4.6
13dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.6
14emb|AL662960.3|OSJN00162 Oryza sativa genomic DNA, chromosome 4,... 40 4.6 
>ref|NM_186147.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3033

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 60/68 (88%)
 Strand = Plus / Minus

                                                                        
Query: 262  acgctgtcgagccaaacaacgacttgctctatggatggacgctggcgagggtcagtgctg 321
            |||||||| |||||| |||| ||||| || || ||||| ||||| |||||||||||||||
Sbjct: 3029 acgctgtcaagccaagcaacaacttgttcgatcgatgggcgctgccgagggtcagtgctg 2970

                    
Query: 322  atgcacct 329
            ||||||||
Sbjct: 2969 atgcacct 2962
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
              complete sequence
          Length = 29644043

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 60/68 (88%)
 Strand = Plus / Minus

                                                                          
Query: 262    acgctgtcgagccaaacaacgacttgctctatggatggacgctggcgagggtcagtgctg 321
              |||||||| |||||| |||| ||||| || || ||||| ||||| |||||||||||||||
Sbjct: 427125 acgctgtcaagccaagcaacaacttgttcgatcgatgggcgctgccgagggtcagtgctg 427066

                      
Query: 322    atgcacct 329
              ||||||||
Sbjct: 427065 atgcacct 427058
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>dbj|AP004342.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0585H11
          Length = 149371

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 60/68 (88%)
 Strand = Plus / Minus

                                                                         
Query: 262   acgctgtcgagccaaacaacgacttgctctatggatggacgctggcgagggtcagtgctg 321
             |||||||| |||||| |||| ||||| || || ||||| ||||| |||||||||||||||
Sbjct: 29289 acgctgtcaagccaagcaacaacttgttcgatcgatgggcgctgccgagggtcagtgctg 29230

                     
Query: 322   atgcacct 329
             ||||||||
Sbjct: 29229 atgcacct 29222
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>dbj|AK121984.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033108O10, full
            insert sequence
          Length = 3392

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 60/68 (88%)
 Strand = Plus / Minus

                                                                        
Query: 262  acgctgtcgagccaaacaacgacttgctctatggatggacgctggcgagggtcagtgctg 321
            |||||||| |||||| |||| ||||| || || ||||| ||||| |||||||||||||||
Sbjct: 3155 acgctgtcaagccaagcaacaacttgttcgatcgatgggcgctgccgagggtcagtgctg 3096

                    
Query: 322  atgcacct 329
            ||||||||
Sbjct: 3095 atgcacct 3088
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>dbj|AK103166.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033121E13, full
            insert sequence
          Length = 2958

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 60/68 (88%)
 Strand = Plus / Minus

                                                                        
Query: 262  acgctgtcgagccaaacaacgacttgctctatggatggacgctggcgagggtcagtgctg 321
            |||||||| |||||| |||| ||||| || || ||||| ||||| |||||||||||||||
Sbjct: 2693 acgctgtcaagccaagcaacaacttgttcgatcgatgggcgctgccgagggtcagtgctg 2634

                    
Query: 322  atgcacct 329
            ||||||||
Sbjct: 2633 atgcacct 2626
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>dbj|AK064359.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-108-B08, full
            insert sequence
          Length = 2238

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 60/68 (88%)
 Strand = Plus / Minus

                                                                        
Query: 262  acgctgtcgagccaaacaacgacttgctctatggatggacgctggcgagggtcagtgctg 321
            |||||||| |||||| |||| ||||| || || ||||| ||||| |||||||||||||||
Sbjct: 1840 acgctgtcaagccaagcaacaacttgttcgatcgatgggcgctgccgagggtcagtgctg 1781

                    
Query: 322  atgcacct 329
            ||||||||
Sbjct: 1780 atgcacct 1773
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>gb|AC008747.5|AC008747 Homo sapiens chromosome 19 clone CTD-2588C8, complete sequence
          Length = 159597

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 230   actgggaaagcaacacagggta 251
             ||||||||||||||||||||||
Sbjct: 31391 actgggaaagcaacacagggta 31370
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>gb|AC117221.3| Mus musculus BAC clone RP23-347F2 from 1, complete sequence
          Length = 194077

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 154   ttgatagttctcagatagtttctc 177
             |||||||||||||||| |||||||
Sbjct: 98498 ttgatagttctcagattgtttctc 98475
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>emb|CR524821.5| Zebrafish DNA sequence from clone CH211-192F15 in linkage group 16,
             complete sequence
          Length = 152728

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 215   attgaccaaaagagaactgg 234
             ||||||||||||||||||||
Sbjct: 17880 attgaccaaaagagaactgg 17899



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 215   attgaccaaaagagaactgg 234
             ||||||||||||||||||||
Sbjct: 17632 attgaccaaaagagaactgg 17651
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>gb|AC092832.7| Homo sapiens X BAC RP11-494I9 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 196491

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 89     cagcatctataaaaaagaaa 108
              ||||||||||||||||||||
Sbjct: 156952 cagcatctataaaaaagaaa 156971
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>gb|AC016450.10| Homo sapiens chromosome 11, clone RP11-361K15, complete sequence
          Length = 187449

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 81     tgccggttcagcatctataaaaaa 104
              |||| |||||||||||||||||||
Sbjct: 100258 tgccagttcagcatctataaaaaa 100281
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>gb|AC068107.6| Homo sapiens chromosome 11, clone RP11-807F21, complete sequence
          Length = 177969

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 81    tgccggttcagcatctataaaaaa 104
             |||| |||||||||||||||||||
Sbjct: 58768 tgccagttcagcatctataaaaaa 58745
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 188     gtttatcacccatgtcaaga 207
               ||||||||||||||||||||
Sbjct: 7581080 gtttatcacccatgtcaaga 7581099
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>emb|AL662960.3|OSJN00162 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0021F22,
              complete sequence
          Length = 181498

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 188    gtttatcacccatgtcaaga 207
              ||||||||||||||||||||
Sbjct: 103553 gtttatcacccatgtcaaga 103572


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,818,222
Number of Sequences: 3902068
Number of extensions: 3818222
Number of successful extensions: 63918
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63859
Number of HSP's gapped (non-prelim): 59
length of query: 350
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 328
effective length of database: 17,147,199,772
effective search space: 5624281525216
effective search space used: 5624281525216
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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