>UTX_MOUSE (O70546) Ubiquitously transcribed X chromosome tetratricopeptide|
            repeat protein (Ubiquitously transcribed TPR protein on
            the X chromosome) (Fragment)
          Length = 1333

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 29/98 (29%), Positives = 38/98 (38%), Gaps = 6/98 (6%)
 Frame = +3

Query: 21   SLN*KHSSQISIQHPSNSTVQLPIP---LLDTHTHKTHIT---SCAFRPPCNRPNSRVRR 182
            SLN  HS   +I        Q PI    LL +H     I    S +  P         R 
Sbjct: 775  SLNSPHSGLHTINGEGMEESQSPIKTDLLLVSHRPSPQIIPSMSVSIYPSSAEVLKACRN 834

Query: 183  RGKNEGALAQLTHGESPADRPNSLHAPALPERKINSKT 296
             GKN  + + +   + P  RP S   P LP+ K+N  T
Sbjct: 835  LGKNGLSNSSILLDKCPPPRPPSSPYPPLPKDKLNPPT 872

>YMV6_YEAST (Q04748) Hypothetical 104.7 kDa protein in NCA1-HMS1 intergenic|
           region
          Length = 898

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 140 ISPTLQPSEL*SSSAGQKRGRPCATYSRRIASRP 241
           I+P L+  +  SS +      PC  Y+RRI ++P
Sbjct: 658 INPLLESKQQVSSESSLSTSNPCRFYNRRIITKP 691

>SP110_HUMAN (Q9HB58) Sp110 nuclear body protein (Speckled 110 kDa)|
           (Transcriptional coactivator Sp110) (Interferon-induced
           protein 41/75)
          Length = 689

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 10/103 (9%)
 Frame = +3

Query: 12  NEPSLN*KHSSQISIQHPSNSTVQLPIPLLDTHTHKTHITSCAFRPPCNRPNSRVRR--- 182
           +EP  + + S++I  + PS S   LP+P L      T +T+       N           
Sbjct: 157 SEPGTSSQQSTEILSESPSPSDPVLPLPALIQEGRSTSVTNDKLTSKMNAEEDSEEMPSL 216

Query: 183 -----RGKNEGALAQLTHGESPADRPNSLHAP--ALPERKINS 290
                +  ++  + Q+   E P + P   H+P  ++PE + NS
Sbjct: 217 LTSTVQVASDNLIPQIRDKEDPQEMP---HSPLGSMPEIRDNS 256

>SKEL_DROME (Q9GPJ1) Protein skeletor|
          Length = 743

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +1

Query: 58  NTPPTQLYSSPSLFL--THTHTKHTSPPA 138
           N  PT++ S P + L  TH HT + SP A
Sbjct: 91  NVTPTEISSRPEILLGETHAHTLNASPSA 119

>ADEN_ADEF1 (Q9IIH4) Adenain (EC 3.4.22.39) (Endoprotease) (Late L3 23 kDa|
           protein)
          Length = 204

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 43  VRLASNTPPTQLYSSPSLFLTHTHTK 120
           + L    PPT+L+SS  ++LTH + K
Sbjct: 146 IDLVDGIPPTKLHSSYGIYLTHCNQK 171

>RUVB_LEIXX (Q6AFB4) Holliday junction ATP-dependent DNA helicase ruvB (EC|
           3.6.1.-)
          Length = 347

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 17/26 (65%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +1

Query: 163 RTL-EFVGGAKTRAPLRNLLTANRQQ 237
           RTL EFVG AK R  L+ LLTA R Q
Sbjct: 27  RTLAEFVGQAKVRGQLQLLLTAARMQ 52

>CRTI_STRGR (P54981) Phytoene dehydrogenase (EC 1.14.99.-) (Phytoene|
           desaturase)
          Length = 507

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 2/90 (2%)
 Frame = +1

Query: 37  IQVRLASNTP--PTQLYSSPSLFLTHTHTKHTSPPAHFAHLATVRTLEFVGGAKTRAPLR 210
           +  RL   TP  P  L  SPS  + HT T  T P    AH     T+ F  GA  +    
Sbjct: 286 VSYRLLGRTPHRPLPLRHSPSAVILHTGTDRTWP--DLAH----HTISF--GAAWKNTFH 337

Query: 211 NLLTANRQQTVRTRYMPQPCRREK*IAKPG 300
            L    R  +  +  + +P   +  +A PG
Sbjct: 338 ELTRTGRLMSDPSLLITRPTATDPSLAPPG 367

>GRT1_SCHPO (Q9C469) Zinc finger protein grt1|
          Length = 648

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -3

Query: 152 RWAKCAGGDVCFVC 111
           R  KC+GGDVCF C
Sbjct: 20  RKVKCSGGDVCFEC 33

>Y1257_METJA (Q58654) Hypothetical protein MJ1257|
          Length = 349

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 16/48 (33%), Positives = 19/48 (39%)
 Frame = +1

Query: 31  KSIQVRLASNTPPTQLYSSPSLFLTHTHTKHTSPPAHFAHLATVRTLE 174
           K I   +   T  T LY   SLFLT    KH     +  H    R L+
Sbjct: 260 KDINEEIDLITNDTNLYPDESLFLTLKFAKHLKTNGYIIHTLKARNLK 307


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,390,653
Number of Sequences: 219361
Number of extensions: 1213064
Number of successful extensions: 3220
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3220
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2395157885
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)