Clone Name | rbastl29g01 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_472757.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2502 Score = 305 bits (154), Expect = 7e-80 Identities = 211/230 (91%) Strand = Plus / Minus Query: 224 acctccttgcacacccgctccagcatcccgaggaagtccctgacgatgacgaagatcctg 283 |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| Sbjct: 2444 acctccttgcacaccctctccagcatccccaggaagtccctgacgatgacgaagatcctg 2385 Query: 284 agcgggctcgcctcgtccttgcccacgtcgccgtggtagtactcggtgatgtccctgacg 343 ||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||| Sbjct: 2384 agcgggctcgcctcgtccttgccgacgtcgccatggtagtactcggtgatctccctgacg 2325 Query: 344 tggcccagcacccggcgctcgccgtcctccagctcccggatcacctcctcggcgtggctg 403 || |||||||||| |||||||||||||||||||||||||||||||| |||||||| | Sbjct: 2324 tgcgccagcacccgccgctcgccgtcctccagctcccggatcacctcaccggcgtgggcg 2265 Query: 404 acgaaaggcgccatgaaggcgacgaagcagccgttcctgtcgtcgccgga 453 ||||| ||||||||||| || |||||||| |||||| ||||||||||| Sbjct: 2264 acgaacggcgccatgaacgccacgaagcactggttcctctcgtcgccgga 2215
>emb|BX842605.1|OSJN00299 Oryza sativa genomic DNA, chromosome 4, BAC clone: B1358B12, complete sequence Length = 131246 Score = 305 bits (154), Expect = 7e-80 Identities = 211/230 (91%) Strand = Plus / Plus Query: 224 acctccttgcacacccgctccagcatcccgaggaagtccctgacgatgacgaagatcctg 283 |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| Sbjct: 49536 acctccttgcacaccctctccagcatccccaggaagtccctgacgatgacgaagatcctg 49595 Query: 284 agcgggctcgcctcgtccttgcccacgtcgccgtggtagtactcggtgatgtccctgacg 343 ||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||| Sbjct: 49596 agcgggctcgcctcgtccttgccgacgtcgccatggtagtactcggtgatctccctgacg 49655 Query: 344 tggcccagcacccggcgctcgccgtcctccagctcccggatcacctcctcggcgtggctg 403 || |||||||||| |||||||||||||||||||||||||||||||| |||||||| | Sbjct: 49656 tgcgccagcacccgccgctcgccgtcctccagctcccggatcacctcaccggcgtgggcg 49715 Query: 404 acgaaaggcgccatgaaggcgacgaagcagccgttcctgtcgtcgccgga 453 ||||| ||||||||||| || |||||||| |||||| ||||||||||| Sbjct: 49716 acgaacggcgccatgaacgccacgaagcactggttcctctcgtcgccgga 49765
>emb|AL606460.3|OSJN00003 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072F16, complete sequence Length = 176383 Score = 305 bits (154), Expect = 7e-80 Identities = 211/230 (91%) Strand = Plus / Plus Query: 224 acctccttgcacacccgctccagcatcccgaggaagtccctgacgatgacgaagatcctg 283 |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| Sbjct: 147623 acctccttgcacaccctctccagcatccccaggaagtccctgacgatgacgaagatcctg 147682 Query: 284 agcgggctcgcctcgtccttgcccacgtcgccgtggtagtactcggtgatgtccctgacg 343 ||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||| Sbjct: 147683 agcgggctcgcctcgtccttgccgacgtcgccatggtagtactcggtgatctccctgacg 147742 Query: 344 tggcccagcacccggcgctcgccgtcctccagctcccggatcacctcctcggcgtggctg 403 || |||||||||| |||||||||||||||||||||||||||||||| |||||||| | Sbjct: 147743 tgcgccagcacccgccgctcgccgtcctccagctcccggatcacctcaccggcgtgggcg 147802 Query: 404 acgaaaggcgccatgaaggcgacgaagcagccgttcctgtcgtcgccgga 453 ||||| ||||||||||| || |||||||| |||||| ||||||||||| Sbjct: 147803 acgaacggcgccatgaacgccacgaagcactggttcctctcgtcgccgga 147852
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 305 bits (154), Expect = 7e-80 Identities = 211/230 (91%) Strand = Plus / Plus Query: 224 acctccttgcacacccgctccagcatcccgaggaagtccctgacgatgacgaagatcctg 283 |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| Sbjct: 23053206 acctccttgcacaccctctccagcatccccaggaagtccctgacgatgacgaagatcctg 23053265 Query: 284 agcgggctcgcctcgtccttgcccacgtcgccgtggtagtactcggtgatgtccctgacg 343 ||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||| Sbjct: 23053266 agcgggctcgcctcgtccttgccgacgtcgccatggtagtactcggtgatctccctgacg 23053325 Query: 344 tggcccagcacccggcgctcgccgtcctccagctcccggatcacctcctcggcgtggctg 403 || |||||||||| |||||||||||||||||||||||||||||||| |||||||| | Sbjct: 23053326 tgcgccagcacccgccgctcgccgtcctccagctcccggatcacctcaccggcgtgggcg 23053385 Query: 404 acgaaaggcgccatgaaggcgacgaagcagccgttcctgtcgtcgccgga 453 ||||| ||||||||||| || |||||||| |||||| ||||||||||| Sbjct: 23053386 acgaacggcgccatgaacgccacgaagcactggttcctctcgtcgccgga 23053435
>dbj|AK106770.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-115-F08, full insert sequence Length = 2771 Score = 305 bits (154), Expect = 7e-80 Identities = 211/230 (91%) Strand = Plus / Minus Query: 224 acctccttgcacacccgctccagcatcccgaggaagtccctgacgatgacgaagatcctg 283 |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| Sbjct: 2556 acctccttgcacaccctctccagcatccccaggaagtccctgacgatgacgaagatcctg 2497 Query: 284 agcgggctcgcctcgtccttgcccacgtcgccgtggtagtactcggtgatgtccctgacg 343 ||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||| Sbjct: 2496 agcgggctcgcctcgtccttgccgacgtcgccatggtagtactcggtgatctccctgacg 2437 Query: 344 tggcccagcacccggcgctcgccgtcctccagctcccggatcacctcctcggcgtggctg 403 || |||||||||| |||||||||||||||||||||||||||||||| |||||||| | Sbjct: 2436 tgcgccagcacccgccgctcgccgtcctccagctcccggatcacctcaccggcgtgggcg 2377 Query: 404 acgaaaggcgccatgaaggcgacgaagcagccgttcctgtcgtcgccgga 453 ||||| ||||||||||| || |||||||| |||||| ||||||||||| Sbjct: 2376 acgaacggcgccatgaacgccacgaagcactggttcctctcgtcgccgga 2327
>gb|AY108789.1| Zea mays PCO072847 mRNA sequence Length = 505 Score = 60.0 bits (30), Expect = 7e-06 Identities = 69/82 (84%) Strand = Plus / Minus Query: 252 cgaggaagtccctgacgatgacgaagatcctgagcgggctcgcctcgtccttgcccacgt 311 |||||||||||||||||| | ||||||||||| |||| ||||| |||||| | || Sbjct: 194 cgaggaagtccctgacgaccatgaagatcctgaacgggtgggcctcctccttggcggagt 135 Query: 312 cgccgtggtagtactcggtgat 333 |||||||| ||||||||||||| Sbjct: 134 cgccgtggaagtactcggtgat 113
>emb|X95326.1|CRRNA818 C.reinhardtii mRNA for LI818r-3 protein Length = 1542 Score = 46.1 bits (23), Expect = 0.099 Identities = 32/35 (91%) Strand = Plus / Minus Query: 358 gcgctcgccgtcctccagctcccggatcacctcct 392 ||||||| |||||||||||||| |||| ||||||| Sbjct: 758 gcgctcgacgtcctccagctccaggataacctcct 724
>ref|XM_470823.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1939 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 359 cgctcgccgtcctccagctccc 380 |||||||||||||||||||||| Sbjct: 286 cgctcgccgtcctccagctccc 307
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 359 cgctcgccgtcctccagctccc 380 |||||||||||||||||||||| Sbjct: 15594005 cgctcgccgtcctccagctccc 15593984
>gb|AC099323.6| Oryza sativa chromosome 3 BAC OSJNBa0065F09 genomic sequence, complete sequence Length = 115079 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 359 cgctcgccgtcctccagctccc 380 |||||||||||||||||||||| Sbjct: 93556 cgctcgccgtcctccagctccc 93535
>gb|AC097279.5| Oryza sativa chromosome 3 BAC OSJNBa0093I13 genomic sequence, complete sequence Length = 178748 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 359 cgctcgccgtcctccagctccc 380 |||||||||||||||||||||| Sbjct: 3959 cgctcgccgtcctccagctccc 3938
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 359 cgctcgccgtcctccagctccc 380 |||||||||||||||||||||| Sbjct: 15588539 cgctcgccgtcctccagctccc 15588518
>dbj|AK106027.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-C11, full insert sequence Length = 1667 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 359 cgctcgccgtcctccagctccc 380 |||||||||||||||||||||| Sbjct: 286 cgctcgccgtcctccagctccc 307
>dbj|AK073726.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033058M13, full insert sequence Length = 1802 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 359 cgctcgccgtcctccagctccc 380 |||||||||||||||||||||| Sbjct: 287 cgctcgccgtcctccagctccc 308
>gb|AC146447.3| Pan troglodytes BAC clone RP43-4N6 from 7, complete sequence Length = 200529 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 342 cgtggcccagcacccggcgct 362 ||||||||||||||||||||| Sbjct: 161387 cgtggcccagcacccggcgct 161367
>gb|AF326961.1|AF326961 Bovine herpesvirus 2 ribonucleotide reductase large subunit and ribonucleotide reductase small subunit genes, complete cds Length = 3312 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 280 cctgagcgggctcgcctcgtc 300 ||||||||||||||||||||| Sbjct: 2082 cctgagcgggctcgcctcgtc 2062
>gb|AC154848.2| Mus musculus BAC clone RP23-38J19 from 13, complete sequence Length = 140465 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 41 ccagtgagtgatcaactcatc 61 ||||||||||||||||||||| Sbjct: 114105 ccagtgagtgatcaactcatc 114085
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 356 cggcgctcgccgtcctccagc 376 ||||||||||||||||||||| Sbjct: 3429706 cggcgctcgccgtcctccagc 3429726 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 345 ggcccagcacccggcgctcg 364 |||||||||||||||||||| Sbjct: 4649836 ggcccagcacccggcgctcg 4649855
>emb|CT025639.13| Mouse DNA sequence from clone RP23-233I11 on chromosome 13, complete sequence Length = 219226 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 41 ccagtgagtgatcaactcatc 61 ||||||||||||||||||||| Sbjct: 176299 ccagtgagtgatcaactcatc 176319
>gb|AC147717.1| Gallus gallus BAC clone CH261-5M18 from chromosome unknown, complete sequence Length = 189841 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 224 acctccttgcacacccgctcc 244 ||||||||||||||||||||| Sbjct: 78863 acctccttgcacacccgctcc 78883
>gb|AE010457.1| Methanopyrus kandleri AV19 section 156 of 157 of the complete genome Length = 14586 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 tcccggatcacctcctcggc 396 |||||||||||||||||||| Sbjct: 2899 tcccggatcacctcctcggc 2918
>ref|XM_955955.1| Neurospora crassa OR74A probable PEL1 (phosphatidylglycerophosphate synthase) [MIPS] (NCU01141.1) partial mRNA Length = 1500 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 321 agtactcggtgatgtccctg 340 |||||||||||||||||||| Sbjct: 598 agtactcggtgatgtccctg 579
>ref|XM_326633.1| Neurospora crassa OR74A probable PEL1 (phosphatidylglycerophosphate synthase) [MIPS] (NCU01141.1) partial mRNA Length = 1500 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 321 agtactcggtgatgtccctg 340 |||||||||||||||||||| Sbjct: 598 agtactcggtgatgtccctg 579
>gb|AC015909.14| Homo sapiens chromosome 17, clone RP11-893F2, complete sequence Length = 217746 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 347 cccagcacccggcgctcgccgtcc 370 ||||||||| |||||||||||||| Sbjct: 23749 cccagcaccaggcgctcgccgtcc 23726
>emb|AL139326.15| Human DNA sequence from clone RP11-351K3 on chromosome 13 Contains the 3' end of the COG3 gene for component of oligomeric golgi complex 3, a novel gene (FLJ32682),a translocase of inner mitochondrial membrane 9 homolog (yeast) (TIMM9) pseudogene and a CpG island, complete sequence Length = 175588 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 aaaaccaagcatcatacgtt 180 |||||||||||||||||||| Sbjct: 89416 aaaaccaagcatcatacgtt 89397
>emb|AL122034.29|HSDJ90K10 Human DNA sequence from clone RP1-90K10 on chromosome 6 Contains the PPIL1 gene for peptidylprolyl isomerase (cyclophilin)-like 1 (CYPL1, CGI-124), gene FLJ25357, a novel gene, a novel pseudogene, the gene for a novel SCP-like extracellular protein, the gene for mitochondrial carrier homolog 1 (MTCH1) (CGI-64) and two CpG islands, complete sequence Length = 133154 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 atacatcccaatcttcaaca 85 |||||||||||||||||||| Sbjct: 22920 atacatcccaatcttcaaca 22901
>emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, complete genome Length = 5064019 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 427 gaagcagccgttcctgtcgt 446 |||||||||||||||||||| Sbjct: 2583415 gaagcagccgttcctgtcgt 2583434
>emb|AL670009.1|NC123A4 Neurospora crassa DNA linkage group V cosmid contig 123A4 Length = 153794 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 321 agtactcggtgatgtccctg 340 |||||||||||||||||||| Sbjct: 139585 agtactcggtgatgtccctg 139566
>emb|AL353820.2|NC13E11 Neurospora crassa DNA linkage group V Cosmid contig 13E11 Length = 70175 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 321 agtactcggtgatgtccctg 340 |||||||||||||||||||| Sbjct: 3545 agtactcggtgatgtccctg 3526
>gb|AC087311.23| Homo sapiens 12 BAC RP11-267D19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 159688 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 tgagtgatcaactcatcaac 64 |||||||||||||||||||| Sbjct: 65638 tgagtgatcaactcatcaac 65619
>gb|DQ397580.1| Cenarchaeum symbiosum clone C18D02, complete sequence Length = 38412 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 292 cgcctcgtccttgcccacgt 311 |||||||||||||||||||| Sbjct: 26544 cgcctcgtccttgcccacgt 26525
>gb|DQ397569.1| Cenarchaeum symbiosum clone C07D08, complete sequence Length = 43141 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 292 cgcctcgtccttgcccacgt 311 |||||||||||||||||||| Sbjct: 25665 cgcctcgtccttgcccacgt 25684
>gb|AC112242.3| Homo sapiens BAC clone RP11-503L23 from 4, complete sequence Length = 86519 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 384 tcacctcctcggcgtggctg 403 |||||||||||||||||||| Sbjct: 60331 tcacctcctcggcgtggctg 60312
>gb|AC004707.1|AC004707 Homo sapiens chromosome 17, clone hRPC.117_B_12, complete sequence Length = 123585 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 347 cccagcacccggcgctcgccgtcc 370 ||||||||| |||||||||||||| Sbjct: 95511 cccagcaccaggcgctcgccgtcc 95488 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,171,914 Number of Sequences: 3902068 Number of extensions: 3171914 Number of successful extensions: 59557 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59323 Number of HSP's gapped (non-prelim): 233 length of query: 455 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 433 effective length of database: 17,147,199,772 effective search space: 7424737501276 effective search space used: 7424737501276 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)