ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl29f12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC150566.16| Medicago truncatula clone mth2-21o10, complete s... 40 0.99
2gb|AC151353.2| Xenopus tropicalis clone ISB-4M1, complete sequence 40 0.99
3emb|BX294189.11| Zebrafish DNA sequence from clone CH211-218D20 ... 40 0.99
4dbj|AP006538.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 0.99
5emb|CR524823.17| Zebrafish DNA sequence from clone CH211-150A18 ... 38 3.9
6emb|CR847786.13| Zebrafish DNA sequence from clone DKEYP-9B4 in ... 38 3.9
7emb|BX927231.12| Zebrafish DNA sequence from clone DKEYP-26F11 i... 38 3.9
8emb|BX936318.10| Zebrafish DNA sequence from clone CH211-229O17 ... 38 3.9
9gb|AC158994.4| Mus musculus BAC clone RP24-79P8 from chromosome ... 38 3.9
10emb|BX005008.12| Zebrafish DNA sequence from clone DKEY-29K15 in... 38 3.9
11emb|BX324233.5| Zebrafish DNA sequence from clone CH211-230L11 i... 38 3.9
12emb|BX247907.8| Zebrafish DNA sequence from clone CH211-232D19 i... 38 3.9
13gb|AC151847.4| Ornithorhynchus anatinus BAC clone OABb-156A1 fro... 38 3.9
14emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB1... 38 3.9
15emb|AL844185.9| Zebrafish DNA sequence from clone DKEY-30H22, co... 38 3.9
16emb|AL671977.8| Mouse DNA sequence from clone RP23-171A16 on chr... 38 3.9
17emb|AL592403.6| Mouse DNA sequence from clone RP23-90A8 on chrom... 38 3.9

>gb|AC150566.16| Medicago truncatula clone mth2-21o10, complete sequence
          Length = 130981

 Score = 40.1 bits (20), Expect = 0.99
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 67    aataggggtggtatgtgtttgttt 90
             |||| |||||||||||||||||||
Sbjct: 38985 aatatgggtggtatgtgtttgttt 39008



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>gb|AC151353.2| Xenopus tropicalis clone ISB-4M1, complete sequence
          Length = 110908

 Score = 40.1 bits (20), Expect = 0.99
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 37    cagtaacaaacaatggtaca 56
             ||||||||||||||||||||
Sbjct: 67603 cagtaacaaacaatggtaca 67622



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>emb|BX294189.11| Zebrafish DNA sequence from clone CH211-218D20 in linkage group 9,
             complete sequence
          Length = 194025

 Score = 40.1 bits (20), Expect = 0.99
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 15    accattaatcaaatcaaatc 34
             ||||||||||||||||||||
Sbjct: 86074 accattaatcaaatcaaatc 86055



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>dbj|AP006538.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT18J10, TM0323a,
             complete sequence
          Length = 95559

 Score = 40.1 bits (20), Expect = 0.99
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 15    accattaatcaaatcaaatc 34
             ||||||||||||||||||||
Sbjct: 85715 accattaatcaaatcaaatc 85734



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>emb|CR524823.17| Zebrafish DNA sequence from clone CH211-150A18 in linkage group 16,
             complete sequence
          Length = 155638

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 72    gggtggtatgtgtttgttt 90
             |||||||||||||||||||
Sbjct: 37655 gggtggtatgtgtttgttt 37673



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>emb|CR847786.13| Zebrafish DNA sequence from clone DKEYP-9B4 in linkage group 13,
             complete sequence
          Length = 156551

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 72    gggtggtatgtgtttgttt 90
             |||||||||||||||||||
Sbjct: 90932 gggtggtatgtgtttgttt 90914



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>emb|BX927231.12| Zebrafish DNA sequence from clone DKEYP-26F11 in linkage group 19,
             complete sequence
          Length = 104269

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 72    gggtggtatgtgtttgttt 90
             |||||||||||||||||||
Sbjct: 95122 gggtggtatgtgtttgttt 95104



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>emb|BX936318.10| Zebrafish DNA sequence from clone CH211-229O17 in linkage group 13,
             complete sequence
          Length = 158912

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 72    gggtggtatgtgtttgttt 90
             |||||||||||||||||||
Sbjct: 14304 gggtggtatgtgtttgttt 14286



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>gb|AC158994.4| Mus musculus BAC clone RP24-79P8 from chromosome 5, complete sequence
          Length = 201330

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 22    atcaaatcaaatctccagt 40
             |||||||||||||||||||
Sbjct: 83047 atcaaatcaaatctccagt 83065



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>emb|BX005008.12| Zebrafish DNA sequence from clone DKEY-29K15 in linkage group 14,
              complete sequence
          Length = 208014

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 72     gggtggtatgtgtttgttt 90
              |||||||||||||||||||
Sbjct: 181910 gggtggtatgtgtttgttt 181892



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>emb|BX324233.5| Zebrafish DNA sequence from clone CH211-230L11 in linkage group 22,
             complete sequence
          Length = 157470

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 8     gtagttcaccattaatcaaatcaaatc 34
             |||||||||||||| |||||| |||||
Sbjct: 38247 gtagttcaccattattcaaataaaatc 38273



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>emb|BX247907.8| Zebrafish DNA sequence from clone CH211-232D19 in linkage group 8,
              complete sequence
          Length = 169530

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 72     gggtggtatgtgtttgttt 90
              |||||||||||||||||||
Sbjct: 124689 gggtggtatgtgtttgttt 124671



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>gb|AC151847.4| Ornithorhynchus anatinus BAC clone OABb-156A1 from chromosome unknown,
              complete sequence
          Length = 120614

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 49     atggtacaaggatggcaca 67
              |||||||||||||||||||
Sbjct: 103190 atggtacaaggatggcaca 103172



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>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica
          Length = 3272609

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 40     taacaaacaatggtacaag 58
              |||||||||||||||||||
Sbjct: 541663 taacaaacaatggtacaag 541681



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>emb|AL844185.9| Zebrafish DNA sequence from clone DKEY-30H22, complete sequence
          Length = 180872

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 72     gggtggtatgtgtttgttt 90
              |||||||||||||||||||
Sbjct: 135446 gggtggtatgtgtttgttt 135464



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>emb|AL671977.8| Mouse DNA sequence from clone RP23-171A16 on chromosome X, complete
             sequence
          Length = 193108

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 73    ggtggtatgtgtttgtttg 91
             |||||||||||||||||||
Sbjct: 97635 ggtggtatgtgtttgtttg 97653



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>emb|AL592403.6| Mouse DNA sequence from clone RP23-90A8 on chromosome 1, complete
              sequence
          Length = 165527

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 17     cattaatcaaatcaaatct 35
              |||||||||||||||||||
Sbjct: 128756 cattaatcaaatcaaatct 128774


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 927,609
Number of Sequences: 3902068
Number of extensions: 927609
Number of successful extensions: 71279
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71229
Number of HSP's gapped (non-prelim): 50
length of query: 91
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 70
effective length of database: 17,151,101,840
effective search space: 1200577128800
effective search space used: 1200577128800
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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