ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl29f11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_469360.1| Oryza sativa (japonica cultivar-group), mRNA 76 8e-11
2dbj|AK121157.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 8e-11
3gb|AY109108.1| Zea mays PCO116815 mRNA sequence 76 8e-11
4dbj|AK066973.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 2e-08
5gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 64 3e-07
6gb|AC137998.2| Oryza sativa chromosome 3 BAC OSJNBa0010B01 genom... 64 3e-07
7dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 64 3e-07
8gb|AC120508.3| Oryza sativa chromosome 3 BAC OSJNBb0021O11 genom... 64 3e-07
9gb|AY112223.1| Zea mays CL3071_1 mRNA sequence 60 5e-06
10gb|BT017806.1| Zea mays clone EL01N0506F04.c mRNA sequence 52 0.001
11gb|AC121490.2| Oryza sativa (japonica cultivar-group) chromosome... 52 0.001
12gb|AC153930.2| Mus musculus 10 BAC RP24-461H14 (Roswell Park Can... 46 0.070
13gb|AC146506.1| Solanum demissum chromosome 5 BAC PGEC989P08 geno... 44 0.27
14gb|AY730338.1| Solanum tuberosum strain P6/210 clone BAC BA47f2,... 42 1.1
15ref|XM_537383.2| PREDICTED: Canis familiaris similar to RING fin... 42 1.1
16gb|AC125496.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.1
17dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
18dbj|AP005822.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
19dbj|AP005695.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
20dbj|AK100513.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.1
21emb|AL670175.12| Mouse DNA sequence from clone RP23-309K20 on ch... 42 1.1
22gb|AC113122.9| Mus musculus chromosome 8, clone RP23-349P4, comp... 40 4.3
23ref|XM_543770.2| PREDICTED: Canis familiaris similar to solute c... 40 4.3
24gb|AC125339.4| Mus musculus BAC clone RP24-356P17 from chromosom... 40 4.3
25emb|Z95310.1|CEH40L08 Caenorhabditis elegans Fosmid H40L08, comp... 40 4.3
26emb|AL683828.8| Mouse DNA sequence from clone RP23-340H1 on chro... 40 4.3
27emb|AL845501.9| Mouse DNA sequence from clone RP23-194C12 on chr... 40 4.3
28gb|AC105426.4| Homo sapiens BAC clone RP11-794N18 from 4, comple... 40 4.3
29ref|NM_079456.2| Drosophila melanogaster Soluble NSF attachment ... 40 4.3
30gb|AC009839.10| Drosophila melanogaster 3L BAC RP98-16G9 (Roswel... 40 4.3
31gb|AC093260.2| Homo sapiens chromosome 5 clone RP11-237B16, comp... 40 4.3
32gb|AC138310.3| Mus musculus BAC clone RP23-205H21 from chromosom... 40 4.3
33gb|AC083783.8| Homo sapiens chromosome 17, clone RP11-462C21, co... 40 4.3
34gb|AC092960.3| Homo sapiens 3 BAC RP11-393B14 (Roswell Park Canc... 40 4.3
35gb|AC113368.3| Homo sapiens chromosome 5 clone RP11-116B13, comp... 40 4.3
36ref|XM_228548.3| PREDICTED: Rattus norvegicus similar to hypothe... 40 4.3
37gb|AY069477.1| Drosophila melanogaster LD21601 full insert cDNA 40 4.3
38emb|AL583742.2|CNS07EFV Human chromosome 14 DNA sequence BAC R-3... 40 4.3
39gb|AC134339.6| Mus musculus BAC clone RP23-5F21 from 8, complete... 40 4.3
40gb|AE003514.4| Drosophila melanogaster chromosome 3L, section 71... 40 4.3
41gb|AC005291.1|AC005291 Homo sapiens chromosome 17, clone hRPK.40... 40 4.3
42gb|U09374.1|DMU09374 Drosophila melanogaster soluble NSF attachm... 40 4.3
43emb|AL691423.14| Mouse DNA sequence from clone RP23-21D3 on chro... 40 4.3
44gb|AC024092.19| Homo sapiens 12p BAC RP11-712A21 (Roswell Park C... 40 4.3 
>ref|XM_469360.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3534

 Score = 75.8 bits (38), Expect = 8e-11
 Identities = 98/118 (83%)
 Strand = Plus / Minus

                                                                        
Query: 208  gtgagcttcctcatgtcctcctcttggacactggggggagccttctctctgtaaccggac 267
            ||||| || |||||||||||||| |||||| |  | |||||||||||| ||||||| || 
Sbjct: 3092 gtgagttttctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaa 3033

                                                                      
Query: 268  gcttccatcttctgagacagggcatgctgtaacttttggatttcatccctctttttcc 325
            |||||||| ||||| ||||| || || || | |||||| ||||| || ||||||||||
Sbjct: 3032 gcttccattttctgtgacagtgcgtgttggagcttttgaatttcttctctctttttcc 2975
to top
>dbj|AK121157.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079F18, full
            insert sequence
          Length = 3587

 Score = 75.8 bits (38), Expect = 8e-11
 Identities = 98/118 (83%)
 Strand = Plus / Minus

                                                                        
Query: 208  gtgagcttcctcatgtcctcctcttggacactggggggagccttctctctgtaaccggac 267
            ||||| || |||||||||||||| |||||| |  | |||||||||||| ||||||| || 
Sbjct: 3304 gtgagttttctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaa 3245

                                                                      
Query: 268  gcttccatcttctgagacagggcatgctgtaacttttggatttcatccctctttttcc 325
            |||||||| ||||| ||||| || || || | |||||| ||||| || ||||||||||
Sbjct: 3244 gcttccattttctgtgacagtgcgtgttggagcttttgaatttcttctctctttttcc 3187
to top
>gb|AY109108.1| Zea mays PCO116815 mRNA sequence
          Length = 1041

 Score = 75.8 bits (38), Expect = 8e-11
 Identities = 83/98 (84%)
 Strand = Plus / Minus

                                                                       
Query: 157 tctagtttcttctcagcctcaccgatgacccgcagttgctcgaaaaaggcggtgagcttc 216
           |||| |||||||||||| |||| |||||||   |||||||| || || ||||||||||||
Sbjct: 801 tctaatttcttctcagcttcactgatgacctctagttgctccaacaaagcggtgagcttc 742

                                                 
Query: 217 ctcatgtcctcctcttggacactggggggagccttctc 254
           |||||||||||||| || || ||  | |||||||||||
Sbjct: 741 ctcatgtcctcctcctgtacgctctgtggagccttctc 704
to top
>dbj|AK066973.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089D01, full
            insert sequence
          Length = 4411

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 70/82 (85%)
 Strand = Plus / Minus

                                                                        
Query: 244  ggagccttctctctgtaaccggacgcttccatcttctgagacagggcatgctgtaacttt 303
            |||||||||||| | |||||||| |||||||| ||||| || |||||||| || | ||||
Sbjct: 4113 ggagccttctctttataaccggaagcttccattttctgtgatagggcatgttgcagcttt 4054

                                  
Query: 304  tggatttcatccctctttttcc 325
            || ||||| || ||||||||||
Sbjct: 4053 tgaatttcttctctctttttcc 4032
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 68/80 (85%)
 Strand = Plus / Minus

                                                                            
Query: 208      gtgagcttcctcatgtcctcctcttggacactggggggagccttctctctgtaaccggac 267
                ||||| || |||||||||||||| |||||| |  | |||||||||||| ||||||| || 
Sbjct: 27542742 gtgagttttctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaa 27542683

                                    
Query: 268      gcttccatcttctgagacag 287
                |||||||| ||||| |||||
Sbjct: 27542682 gcttccattttctgtgacag 27542663



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                                
Query: 244    ggagccttctctctgtaaccggacgcttccatcttctgagacagggcatg 293
              |||||||||||| | |||||||| |||||||| ||||| || ||||||||
Sbjct: 652074 ggagccttctctttataaccggaagcttccattttctgtgatagggcatg 652025



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 154      gcatctagtttcttctcagcctcac 178
                |||||||||||||||||||| ||||
Sbjct: 12395727 gcatctagtttcttctcagcttcac 12395751
to top
>gb|AC137998.2| Oryza sativa chromosome 3 BAC OSJNBa0010B01 genomic sequence, complete
             sequence
          Length = 27470

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 68/80 (85%)
 Strand = Plus / Plus

                                                                         
Query: 208   gtgagcttcctcatgtcctcctcttggacactggggggagccttctctctgtaaccggac 267
             ||||| || |||||||||||||| |||||| |  | |||||||||||| ||||||| || 
Sbjct: 20032 gtgagttttctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaa 20091

                                 
Query: 268   gcttccatcttctgagacag 287
             |||||||| ||||| |||||
Sbjct: 20092 gcttccattttctgtgacag 20111
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 68/80 (85%)
 Strand = Plus / Minus

                                                                            
Query: 208      gtgagcttcctcatgtcctcctcttggacactggggggagccttctctctgtaaccggac 267
                ||||| || |||||||||||||| |||||| |  | |||||||||||| ||||||| || 
Sbjct: 27634065 gtgagttttctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaa 27634006

                                    
Query: 268      gcttccatcttctgagacag 287
                |||||||| ||||| |||||
Sbjct: 27634005 gcttccattttctgtgacag 27633986



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                                
Query: 244    ggagccttctctctgtaaccggacgcttccatcttctgagacagggcatg 293
              |||||||||||| | |||||||| |||||||| ||||| || ||||||||
Sbjct: 652072 ggagccttctctttataaccggaagcttccattttctgtgatagggcatg 652023



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 154      gcatctagtttcttctcagcctcac 178
                |||||||||||||||||||| ||||
Sbjct: 12392490 gcatctagtttcttctcagcttcac 12392514
to top
>gb|AC120508.3| Oryza sativa chromosome 3 BAC OSJNBb0021O11 genomic sequence,
            complete sequence
          Length = 123406

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 68/80 (85%)
 Strand = Plus / Plus

                                                                        
Query: 208  gtgagcttcctcatgtcctcctcttggacactggggggagccttctctctgtaaccggac 267
            ||||| || |||||||||||||| |||||| |  | |||||||||||| ||||||| || 
Sbjct: 7772 gtgagttttctcatgtcctcctcctggacattctgtggagccttctctttgtaaccagaa 7831

                                
Query: 268  gcttccatcttctgagacag 287
            |||||||| ||||| |||||
Sbjct: 7832 gcttccattttctgtgacag 7851
to top
>gb|AY112223.1| Zea mays CL3071_1 mRNA sequence
          Length = 1082

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 63/74 (85%)
 Strand = Plus / Plus

                                                                       
Query: 157 tctagtttcttctcagcctcaccgatgacccgcagttgctcgaaaaaggcggtgagcttc 216
           |||| |||||||||||| |||| |||||||   ||||| || || || ||||||||||| 
Sbjct: 446 tctaatttcttctcagcttcactgatgacctctagttgttccaacaaagcggtgagcttt 505

                         
Query: 217 ctcatgtcctcctc 230
           ||||||||||||||
Sbjct: 506 ctcatgtcctcctc 519
to top
>gb|BT017806.1| Zea mays clone EL01N0506F04.c mRNA sequence
          Length = 1244

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 80/98 (81%)
 Strand = Plus / Minus

                                                                       
Query: 157 tctagtttcttctcagcctcaccgatgacccgcagttgctcgaaaaaggcggtgagcttc 216
           |||| |||||||||||| |||| |||||||   ||||| || || || |||| |||||| 
Sbjct: 953 tctaatttcttctcagcttcactgatgacctctagttgttccaacaaagcggggagcttt 894

                                                 
Query: 217 ctcatgtcctcctcttggacactggggggagccttctc 254
           |||||||||||||| || || ||  | |||||||||||
Sbjct: 893 ctcatgtcctcctcctgcacgctctgtggagccttctc 856
to top
>gb|AC121490.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0005F16, complete sequence
          Length = 160053

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                               
Query: 244   ggagccttctctctgtaaccggacgcttccatcttctgagacagggcatg 293
             |||||||||||| | |||||||| |||||||| ||||| || ||||||||
Sbjct: 37955 ggagccttctctttataaccggaagcttccattttctgtgatagggcatg 37906
to top
>gb|AC153930.2| Mus musculus 10 BAC RP24-461H14 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 186915

 Score = 46.1 bits (23), Expect = 0.070
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 26     tttgaattttctataaatgtgacatca 52
              |||||| ||||||||||||||||||||
Sbjct: 132214 tttgaaatttctataaatgtgacatca 132188
to top
>gb|AC146506.1| Solanum demissum chromosome 5 BAC PGEC989P08 genomic sequence, complete
             sequence
          Length = 121915

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 24    catttgaattttctataaatgt 45
             ||||||||||||||||||||||
Sbjct: 75708 catttgaattttctataaatgt 75687
to top
>gb|AY730338.1| Solanum tuberosum strain P6/210 clone BAC BA47f2, complete sequence
          Length = 81567

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 25    atttgaattttctataaatgt 45
             |||||||||||||||||||||
Sbjct: 74176 atttgaattttctataaatgt 74196
to top
>ref|XM_537383.2| PREDICTED: Canis familiaris similar to RING finger protein 31 (Zinc
            in-between-RING-finger ubiquitin-associated domain
            protein) (LOC480259), mRNA
          Length = 3490

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 173  cctcaccgatgacccgcagttgctc 197
            ||||||||||||| |||||||||||
Sbjct: 2442 cctcaccgatgacacgcagttgctc 2466
to top
>gb|AC125496.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0098H14, complete sequence
          Length = 132560

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 154   gcatctagtttcttctcagcctcac 178
             |||||||||||||||||||| ||||
Sbjct: 54745 gcatctagtttcttctcagcttcac 54769
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 79      tatcaacttccaaacaaaaat 99
               |||||||||||||||||||||
Sbjct: 9829802 tatcaacttccaaacaaaaat 9829822
to top
>dbj|AP005822.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0456E06
          Length = 164353

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 79     tatcaacttccaaacaaaaat 99
              |||||||||||||||||||||
Sbjct: 120044 tatcaacttccaaacaaaaat 120064
to top
>dbj|AP005695.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0063H02
          Length = 152326

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 79    tatcaacttccaaacaaaaat 99
             |||||||||||||||||||||
Sbjct: 26437 tatcaacttccaaacaaaaat 26457
to top
>dbj|AK100513.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099P08, full
            insert sequence
          Length = 3639

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 154  gcatctagtttcttctcagcctcac 178
            |||||||||||||||||||| ||||
Sbjct: 3519 gcatctagtttcttctcagcttcac 3495
to top
>emb|AL670175.12| Mouse DNA sequence from clone RP23-309K20 on chromosome 4, complete
              sequence
          Length = 168158

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 41     aatgtgacatcaccaccatcc 61
              |||||||||||||||||||||
Sbjct: 140982 aatgtgacatcaccaccatcc 141002
to top
>gb|AC113122.9| Mus musculus chromosome 8, clone RP23-349P4, complete sequence
          Length = 203728

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 23    ccatttgaattttctataaa 42
             ||||||||||||||||||||
Sbjct: 23208 ccatttgaattttctataaa 23189
to top
>ref|XM_543770.2| PREDICTED: Canis familiaris similar to solute carrier family 7
            (cationic amino acid transporter, y+ system), member 3
            (LOC486643), mRNA
          Length = 3279

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 291  atgctgtaacttttggattt 310
            ||||||||||||||||||||
Sbjct: 1571 atgctgtaacttttggattt 1590
to top
>gb|AC125339.4| Mus musculus BAC clone RP24-356P17 from chromosome 17, complete
             sequence
          Length = 156282

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 83    aacttccaaacaaaaatgcc 102
             ||||||||||||||||||||
Sbjct: 16747 aacttccaaacaaaaatgcc 16766
to top
>emb|Z95310.1|CEH40L08 Caenorhabditis elegans Fosmid H40L08, complete sequence
          Length = 15122

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 83   aacttccaaacaaaaatgcc 102
            ||||||||||||||||||||
Sbjct: 3649 aacttccaaacaaaaatgcc 3668
to top
>emb|AL683828.8| Mouse DNA sequence from clone RP23-340H1 on chromosome 4 Contains the
             3' end of the Col27a1 gene for procollagen type XXVII
             alpha 1, the Orm1, Orm2 and Orm3 genes for orosomucoid 1,
             2 and 3, an orosomucoid pseudogene, the gene for a novel
             protein similar to human AT-hook protein AKNA, gene
             4933437N03Rik, the Whrn gene for whirlin and two CpG
             islands, complete sequence
          Length = 214370

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 210   gagcttcctcatgtcctcct 229
             ||||||||||||||||||||
Sbjct: 31754 gagcttcctcatgtcctcct 31735
to top
>emb|AL845501.9| Mouse DNA sequence from clone RP23-194C12 on chromosome 4 Contains a
             ribosomal protein S18 (Rps18) pseudogene, complete
             sequence
          Length = 156572

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 270   ttccatcttctgagacaggg 289
             ||||||||||||||||||||
Sbjct: 31116 ttccatcttctgagacaggg 31135
to top
>gb|AC105426.4| Homo sapiens BAC clone RP11-794N18 from 4, complete sequence
          Length = 55775

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 212   gcttcctcatgtcctcctct 231
             ||||||||||||||||||||
Sbjct: 23507 gcttcctcatgtcctcctct 23526
to top
>ref|NM_079456.2| Drosophila melanogaster Soluble NSF attachment protein CG6625-RA
            (Snap), mRNA
          Length = 2069

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 29   gaattttctataaatgtgac 48
            ||||||||||||||||||||
Sbjct: 1762 gaattttctataaatgtgac 1743
to top
>gb|AC009839.10| Drosophila melanogaster 3L BAC RP98-16G9 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 185918

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 29     gaattttctataaatgtgac 48
              ||||||||||||||||||||
Sbjct: 106242 gaattttctataaatgtgac 106223
to top
>gb|AC093260.2| Homo sapiens chromosome 5 clone RP11-237B16, complete sequence
          Length = 168521

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 31   attttctataaatgtgacat 50
            ||||||||||||||||||||
Sbjct: 1961 attttctataaatgtgacat 1980
to top
>gb|AC138310.3| Mus musculus BAC clone RP23-205H21 from chromosome 17, complete sequence
          Length = 195483

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 83     aacttccaaacaaaaatgcc 102
              ||||||||||||||||||||
Sbjct: 160602 aacttccaaacaaaaatgcc 160621
to top
>gb|AC083783.8| Homo sapiens chromosome 17, clone RP11-462C21, complete sequence
          Length = 143516

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 28     tgaattttctataaatgtga 47
              ||||||||||||||||||||
Sbjct: 121095 tgaattttctataaatgtga 121076
to top
>gb|AC092960.3| Homo sapiens 3 BAC RP11-393B14 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 172507

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 24     catttgaattttctataaat 43
              ||||||||||||||||||||
Sbjct: 161099 catttgaattttctataaat 161080
to top
>gb|AC113368.3| Homo sapiens chromosome 5 clone RP11-116B13, complete sequence
          Length = 155354

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 31    attttctataaatgtgacat 50
             ||||||||||||||||||||
Sbjct: 23774 attttctataaatgtgacat 23793
to top
>ref|XM_228548.3| PREDICTED: Rattus norvegicus similar to hypothetical protein
            6430402L03 (LOC302412), mRNA
          Length = 1632

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 213  cttcctcatgtcctcctctt 232
            ||||||||||||||||||||
Sbjct: 1005 cttcctcatgtcctcctctt 986
to top
>gb|AY069477.1| Drosophila melanogaster LD21601 full insert cDNA
          Length = 2054

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 29   gaattttctataaatgtgac 48
            ||||||||||||||||||||
Sbjct: 1730 gaattttctataaatgtgac 1711
to top
>emb|AL583742.2|CNS07EFV Human chromosome 14 DNA sequence BAC R-318A9 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 175584

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 42    atgtgacatcaccaccatcc 61
             ||||||||||||||||||||
Sbjct: 71007 atgtgacatcaccaccatcc 71026
to top
>gb|AC134339.6| Mus musculus BAC clone RP23-5F21 from 8, complete sequence
          Length = 229073

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 294    ctgtaacttttggatttcat 313
              ||||||||||||||||||||
Sbjct: 161157 ctgtaacttttggatttcat 161138
to top
>gb|AE003514.4| Drosophila melanogaster chromosome 3L, section 71 of 83 of the complete
              sequence
          Length = 299903

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 29     gaattttctataaatgtgac 48
              ||||||||||||||||||||
Sbjct: 288396 gaattttctataaatgtgac 288377
to top
>gb|AC005291.1|AC005291 Homo sapiens chromosome 17, clone hRPK.401_O_9, complete sequence
          Length = 198582

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 28    tgaattttctataaatgtga 47
             ||||||||||||||||||||
Sbjct: 63377 tgaattttctataaatgtga 63358
to top
>gb|U09374.1|DMU09374 Drosophila melanogaster soluble NSF attachment protein mRNA, complete
            cds
          Length = 2038

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 29   gaattttctataaatgtgac 48
            ||||||||||||||||||||
Sbjct: 1718 gaattttctataaatgtgac 1699
to top
>emb|AL691423.14| Mouse DNA sequence from clone RP23-21D3 on chromosome 2, complete
              sequence
          Length = 216415

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 26     tttgaattttctataaatgt 45
              ||||||||||||||||||||
Sbjct: 104442 tttgaattttctataaatgt 104461
to top
>gb|AC024092.19| Homo sapiens 12p BAC RP11-712A21 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 171887

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 300   cttttggatttcatccctct 319
             ||||||||||||||||||||
Sbjct: 59407 cttttggatttcatccctct 59388


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,612,067
Number of Sequences: 3902068
Number of extensions: 3612067
Number of successful extensions: 106350
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 106138
Number of HSP's gapped (non-prelim): 212
length of query: 325
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 303
effective length of database: 17,147,199,772
effective search space: 5195601530916
effective search space used: 5195601530916
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top