ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl29f10 |
|---|---|
| Clone Library Name | barley_pub |
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 99.0 bits (245), Expect = 3e-21 Identities = 45/45 (100%), Positives = 45/45 (100%) Frame = -3 Query: 297 VVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 163 VVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN Sbjct: 814 VVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 858
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 80.5 bits (197), Expect = 1e-15 Identities = 38/45 (84%), Positives = 40/45 (88%) Frame = -3 Query: 297 VVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 163 VVGMN D LKNRNGPA+FPYMLLYPNTSD GAAAG+TAKGIPN Sbjct: 818 VVGMNGDAGLKNRNGPAEFPYMLLYPNTSDVTGAAAGITAKGIPN 862
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 72.4 bits (176), Expect = 3e-13 Identities = 32/45 (71%), Positives = 38/45 (84%) Frame = -3 Query: 297 VVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 163 V+ MN DP LKNR GPA FPY L++PNTSD+KGAA G+TA+GIPN Sbjct: 815 VLNMNKDPLLKNRVGPANFPYTLMFPNTSDNKGAAEGITARGIPN 859
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 70.5 bits (171), Expect = 1e-12 Identities = 33/45 (73%), Positives = 35/45 (77%) Frame = -3 Query: 297 VVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 163 VV MN DP KNR GP FPY LLYPNTSD KG AAGL+A+GIPN Sbjct: 822 VVAMNKDPHRKNRVGPTNFPYTLLYPNTSDLKGDAAGLSARGIPN 866
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 59.3 bits (142), Expect = 2e-09 Identities = 30/43 (69%), Positives = 31/43 (72%), Gaps = 1/43 (2%) Frame = -3 Query: 288 MNHDPELKNRNGPAKFPYMLLYPNTSD-HKGAAAGLTAKGIPN 163 MN + LKNRNGP K PYMLLYPNTSD K GLTA GIPN Sbjct: 831 MNGNSALKNRNGPVKMPYMLLYPNTSDVTKEKGQGLTAMGIPN 873
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 47.4 bits (111), Expect = 9e-06 Identities = 22/45 (48%), Positives = 27/45 (60%) Frame = -3 Query: 297 VVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 163 ++G N D L+NRNGP K PY +L P D GLT +GIPN Sbjct: 819 IMGRNKDSSLRNRNGPVKMPYTVLLPTCEDE-----GLTFRGIPN 858
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 45.8 bits (107), Expect = 3e-05 Identities = 21/41 (51%), Positives = 27/41 (65%) Frame = -3 Query: 285 NHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 163 N+D L+NR GP K PY LLYP++ + GLT +GIPN Sbjct: 828 NNDESLRNRYGPVKMPYTLLYPSSEE------GLTCRGIPN 862
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 45.8 bits (107), Expect = 3e-05 Identities = 22/45 (48%), Positives = 29/45 (64%) Frame = -3 Query: 297 VVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 163 ++ N D L+NR GPAK PY LLYP++ + GLT +GIPN Sbjct: 811 LIEKNKDETLRNRYGPAKMPYTLLYPSSEE------GLTFRGIPN 849
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 45.1 bits (105), Expect = 5e-05 Identities = 20/41 (48%), Positives = 29/41 (70%) Frame = -3 Query: 285 NHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 163 N+D +L+NR+GP + PY LLYP++ + GLT +GIPN Sbjct: 823 NNDEKLRNRHGPVEMPYTLLYPSSKE------GLTFRGIPN 857
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 44.3 bits (103), Expect = 8e-05 Identities = 21/41 (51%), Positives = 25/41 (60%) Frame = -3 Query: 285 NHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 163 N DP L+NR GP + PY LL H+ + GLT KGIPN Sbjct: 826 NSDPSLRNRTGPVQLPYTLL------HRSSEEGLTFKGIPN 860
>LOXB_PHAVU (P27481) Lipoxygenase (EC 1.13.11.12) (Fragment)| Length = 741 Score = 42.7 bits (99), Expect = 2e-04 Identities = 21/43 (48%), Positives = 28/43 (65%) Frame = -3 Query: 297 VVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGI 169 +V N+D L+NR GPAK PY LLYP++ + GLT +GI Sbjct: 705 LVQKNNDETLRNRTGPAKMPYTLLYPSSEE------GLTFRGI 741
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 42.0 bits (97), Expect = 4e-04 Identities = 20/41 (48%), Positives = 25/41 (60%) Frame = -3 Query: 285 NHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 163 N+D L NR GP + PY LL+PN+ GLT +GIPN Sbjct: 828 NNDQSLSNRLGPVQLPYTLLHPNSE-------GLTCRGIPN 861
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 42.0 bits (97), Expect = 4e-04 Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 1/46 (2%) Frame = -3 Query: 297 VVGMNHDPELK-NRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 163 +V N+DP L+ NR GP + PY LLYP++ + GLT +GIPN Sbjct: 796 LVRRNNDPSLQGNRLGPVQLPYTLLYPSSEE------GLTFRGIPN 835
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 41.2 bits (95), Expect = 7e-04 Identities = 20/42 (47%), Positives = 24/42 (57%) Frame = -3 Query: 288 MNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 163 MN KNR+GP PY LL+P + + GLT KGIPN Sbjct: 820 MNSHKSWKNRSGPVNVPYTLLFPTSEE------GLTGKGIPN 855
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 40.8 bits (94), Expect = 9e-04 Identities = 19/41 (46%), Positives = 27/41 (65%) Frame = -3 Query: 285 NHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 163 N+DP L +R GP + PY LL+P++ + GLT +GIPN Sbjct: 826 NNDPSLYHRVGPVQLPYTLLHPSSKE------GLTFRGIPN 860
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 40.4 bits (93), Expect = 0.001 Identities = 19/41 (46%), Positives = 27/41 (65%) Frame = -3 Query: 285 NHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 163 N+D +L+NR GP + PY LL P++ + GLT +GIPN Sbjct: 819 NNDEKLRNRCGPVQMPYTLLLPSSKE------GLTFRGIPN 853
>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)| Length = 861 Score = 40.0 bits (92), Expect = 0.002 Identities = 20/45 (44%), Positives = 25/45 (55%) Frame = -3 Query: 297 VVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 163 ++ N D L NR+GP PY LL+P + GLT KGIPN Sbjct: 819 IIQRNGDNILTNRSGPVNAPYTLLFPTSE------GGLTGKGIPN 857
>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)| Length = 859 Score = 39.3 bits (90), Expect = 0.003 Identities = 19/41 (46%), Positives = 24/41 (58%) Frame = -3 Query: 285 NHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 163 N D LKNR G K PY LL+P++ G+T +GIPN Sbjct: 821 NDDETLKNRTGLVKMPYTLLFPSSE------GGVTGRGIPN 855
>LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12)| Length = 860 Score = 37.0 bits (84), Expect = 0.013 Identities = 19/45 (42%), Positives = 24/45 (53%) Frame = -3 Query: 297 VVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 163 ++ N + L NR GP PY LL+P + GLT KGIPN Sbjct: 818 IMQRNGNNILTNRTGPVNAPYTLLFPTSE------GGLTGKGIPN 856
>LOXC2_ORYSA (Q84YK8) Probable lipoxygenase 8, chloroplast precursor (EC| 1.13.11.12) Length = 941 Score = 34.7 bits (78), Expect = 0.063 Identities = 19/43 (44%), Positives = 23/43 (53%) Frame = -3 Query: 291 GMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 163 G N D +LKNR G PY L+ P + AG+T GIPN Sbjct: 901 GRNKDRKLKNRCGAGILPYQLMKPFSD------AGVTGMGIPN 937
>LOXC1_ORYSA (P38419) Lipoxygenase 7, chloroplast precursor (EC 1.13.11.12)| Length = 924 Score = 33.5 bits (75), Expect = 0.14 Identities = 18/43 (41%), Positives = 23/43 (53%) Frame = -3 Query: 291 GMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 163 G N D +LKNR G PY L+ P + +G+T GIPN Sbjct: 884 GRNKDRKLKNRCGAGILPYQLMKPFSD------SGVTGMGIPN 920
>LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC 1.13.11.12)| (LOX-100) (LOX2:Hv:1) Length = 936 Score = 33.1 bits (74), Expect = 0.18 Identities = 13/26 (50%), Positives = 18/26 (69%) Frame = -3 Query: 285 NHDPELKNRNGPAKFPYMLLYPNTSD 208 N+DP+ KNR+G PY+LL P+ D Sbjct: 888 NNDPDRKNRHGAGMVPYVLLRPSDGD 913
>LOX23_HORVU (Q8GSM2) Lipoxygenase 2.3, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:3) Length = 896 Score = 32.7 bits (73), Expect = 0.24 Identities = 18/41 (43%), Positives = 23/41 (56%) Frame = -3 Query: 285 NHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 163 N++PE KNR G PY LL P + G+T +GIPN Sbjct: 858 NNNPENKNRCGAGIVPYELLKPFSE------PGVTGRGIPN 892
>LOX5_ORYSA (Q7XV13) Putative lipoxygenase 5 (EC 1.13.11.12)| Length = 899 Score = 32.3 bits (72), Expect = 0.31 Identities = 15/41 (36%), Positives = 22/41 (53%) Frame = -3 Query: 285 NHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 163 N DP +NR G PY L+ P+ + G+T +G+PN Sbjct: 861 NADPSRRNRCGAGVLPYELMAPS------SGPGITCRGVPN 895
>LOX6_ORYSA (Q8H016) Probable lipoxygenase 6 (EC 1.13.11.12)| Length = 918 Score = 29.3 bits (64), Expect = 2.7 Identities = 16/41 (39%), Positives = 21/41 (51%) Frame = -3 Query: 285 NHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 163 N D KNR G PY LL P+ + G+T +G+PN Sbjct: 880 NADHGRKNRCGAGVLPYELLAPS------SPPGVTCRGVPN 914
>CAD16_MOUSE (O88338) Cadherin-16 precursor (Kidney-specific cadherin)| (Ksp-cadherin) Length = 830 Score = 28.5 bits (62), Expect = 4.5 Identities = 11/19 (57%), Positives = 14/19 (73%) Frame = -3 Query: 297 VVGMNHDPELKNRNGPAKF 241 V G++ DP+L NRNGP F Sbjct: 688 VSGVSEDPDLANRNGPYSF 706
>WDR33_HUMAN (Q9C0J8) WD-repeat protein 33 (WD-repeat protein WDC146)| Length = 1336 Score = 28.1 bits (61), Expect = 5.9 Identities = 16/40 (40%), Positives = 23/40 (57%) Frame = -2 Query: 277 PGAQEPQRPG*VSLHAALPQHLRPQGRRCRAYRQGHPQQH 158 PGA E +RPG P+ R +GRR ++R+G P +H Sbjct: 1074 PGAWEGRRPGDERFPRD-PEDPRFRGRREESFRRGAPPRH 1112 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,430,541 Number of Sequences: 219361 Number of extensions: 708668 Number of successful extensions: 1517 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 1489 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1507 length of database: 80,573,946 effective HSP length: 75 effective length of database: 64,121,871 effective search space used: 1538924904 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
