>COPA_BOVIN (Q27954) Coatomer subunit alpha (Alpha-coat protein) (Alpha-COP)|
            (HEPCOP) (HEP-COP) [Contains: Xenin (Xenopsin-related
            peptide); Proxenin]
          Length = 1224

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 21/57 (36%), Positives = 33/57 (57%)
 Frame = -3

Query: 435  VCGATFVPIYRGQKDVSCPYCASRFVPSVEGQLCSICELSVVGADASGLLCSPTQSR 265
            +C A++ PIYRG+    CP   + + P  +GQ+C +  ++ +G D  GL  SP Q R
Sbjct: 1168 ICAASYRPIYRGKPVEKCPLSGACYSPEFKGQICKVTTVTEIGKDVIGLRISPLQFR 1224

>COPA_HUMAN (P53621) Coatomer subunit alpha (Alpha-coat protein) (Alpha-COP)|
            (HEPCOP) (HEP-COP) [Contains: Xenin (Xenopsin-related
            peptide); Proxenin]
          Length = 1224

 Score = 50.8 bits (120), Expect = 1e-06
 Identities = 21/57 (36%), Positives = 33/57 (57%)
 Frame = -3

Query: 435  VCGATFVPIYRGQKDVSCPYCASRFVPSVEGQLCSICELSVVGADASGLLCSPTQSR 265
            +C A++ PIYRG+    CP   + + P  +GQ+C +  ++ +G D  GL  SP Q R
Sbjct: 1168 ICAASYRPIYRGKPVEKCPLSGACYSPEFKGQICRVTTVTEIGKDVIGLRISPLQFR 1224

>COPA_YEAST (P53622) Coatomer subunit alpha (Alpha-coat protein) (Alpha-COP)|
          Length = 1201

 Score = 39.7 bits (91), Expect = 0.003
 Identities = 19/49 (38%), Positives = 29/49 (59%)
 Frame = -3

Query: 435  VCGATFVPIYRGQKDVSCPYCASRFVPSVEGQLCSICELSVVGADASGL 289
            +C AT+ PIY     VS P   S++V + + ++  I  +S +GA ASGL
Sbjct: 1149 ICAATYKPIYEDTPSVSDPLTGSKYVITEKDKIDRIAMISKIGAPASGL 1197

>SYFM_DROME (O16129) Probable phenylalanyl-tRNA synthetase, mitochondrial|
           precursor (EC 6.1.1.20) (Phenylalanine--tRNA ligase)
           (PheRS)
          Length = 453

 Score = 34.7 bits (78), Expect = 0.11
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = -1

Query: 413 RSTAGRRTSPAPTARPGSCPQSRVSCAAYASSRWSGRTPQVSS 285
           +ST    +S AP   P S PQ  VS + YA+  W+  TP++ S
Sbjct: 15  KSTRCLASSAAPAKSPSSPPQLEVSGSTYATDGWTNVTPKILS 57

>TCGAP_HUMAN (O14559) TC10/CDC42 GTPase-activating protein (Sorting nexin 26)|
          Length = 1287

 Score = 32.0 bits (71), Expect = 0.68
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 8/60 (13%)
 Frame = -1

Query: 404 AGRRTSPAPTARPGSCPQSRVSCAAYASSRWSGR--------TPQVSSAPLHNRDKISGD 249
           AGR   P P +  GSCP +R+     A +R  GR        TP+  ++P   R    G+
Sbjct: 522 AGRCLLPRPKSLAGSCPSTRLLTLEEAQARTQGRLGTPTEPTTPKAPASPAERRKGERGE 581

>SFR17_HUMAN (Q8TF01) Splicing factor, arginine/serine-rich 130|
           (Serine-arginine-rich splicing regulatory protein 130)
           (SRrp130) (SR-rich protein) (SR-related protein)
          Length = 805

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 20/49 (40%), Positives = 27/49 (55%)
 Frame = -1

Query: 425 QPLSRSTAGRRTSPAPTARPGSCPQSRVSCAAYASSRWSGRTPQVSSAP 279
           Q  SRS +    SP+  +R  S   S VS ++Y+SS  S RT   SS+P
Sbjct: 505 QGRSRSGSSSSGSPSSNSRTSST-SSTVSSSSYSSSSGSSRTSSRSSSP 552

>TEGU_EHV1B (P28955) Large tegument protein|
          Length = 3421

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -1

Query: 422  PLSRSTAGRRTSPAPTARPGS-CPQSRVSCAAYASSRWSGRTPQVSSAPLHNRDKI 258
            PL +ST+   + P PT  P    PQS    A+ A+   SG+T  +      ++DK+
Sbjct: 2596 PLPQSTSKAASGPPPTLPPAPPLPQSTSKAASGATQSDSGKTLTLDVPKTQSKDKV 2651

>CO9A2_HUMAN (Q14055) Collagen alpha-2(IX) chain precursor|
          Length = 689

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -1

Query: 428 GQPLSRSTAGRRTSPAPTARPGSC-PQSRVSCAAYASSR 315
           G P +   AGR   P P   PG C P + +  +AYAS+R
Sbjct: 641 GSPGAPGEAGRPGLPGPVGLPGFCEPAACLGASAYASAR 679

>SEM4D_MOUSE (O09126) Semaphorin-4D precursor (Semaphorin J) (Sema J)|
           (Semaphorin C-like 2) (M-Sema G)
          Length = 861

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -1

Query: 398 RRTSPAPTARPGSCPQSRVSCAAYASS 318
           R   P PT RPG+C  S    A Y SS
Sbjct: 357 RYNGPVPTPRPGACIDSEARAANYTSS 383

>ARX_HUMAN (Q96QS3) Homeobox protein ARX (Aristaless-related homeobox)|
          Length = 562

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
 Frame = -1

Query: 437 SSAGQPLSRSTAGRRTS----PAPTARPGSCPQ---SRVSCAAYASSRWSGRTPQVSSAP 279
           ++A    + +TAG R      P PTARPG  P    +  + AA A++ W   T ++S AP
Sbjct: 108 AAAAAAAATATAGPRGEAPPPPPPTARPGERPDGAGAAAAAAAAAAAAWD--TLKISQAP 165

>BSN_RAT (O88778) Bassoon protein|
          Length = 3937

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
 Frame = -1

Query: 425  QPLSRSTAGRRTSPA------PTARPGSCPQSRVSCAAYASSRWSGRTPQVSSAP 279
            QP +RSTA   + PA      PT  PG  P          SS+ + + PQ   AP
Sbjct: 3817 QPTTRSTAPAASHPAGKPQPGPTTAPGPQPAGLPRAEQAGSSKPAAKAPQQGRAP 3871

>CO5A3_HUMAN (P25940) Collagen alpha-3(V) chain precursor|
          Length = 1745

 Score = 29.6 bits (65), Expect = 3.4
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -1

Query: 431 AGQPLSRSTAGRRTSPAPTARPG 363
           AG+P  R   G R SP PT RPG
Sbjct: 595 AGEPGPRGLLGPRGSPGPTGRPG 617

>NMDE3_RAT (Q00961) Glutamate [NMDA] receptor subunit epsilon 3 precursor|
            (N-methyl D-aspartate receptor subtype 2C) (NR2C)
            (NMDAR2C)
          Length = 1237

 Score = 29.6 bits (65), Expect = 3.4
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 9/61 (14%)
 Frame = -1

Query: 437  SSAGQPLSRSTAGRRTSPAPTARPGSC-----PQSRVSCAAYASSRWSGRT----PQVSS 285
            S  G P    T   R +P P ARP +C       SR SC   + +RW  R     P VS+
Sbjct: 951  SGWGPPGGGRTPLARRAPQPPARPATCGPPLPDVSRPSCRHASDARWPVRVGHQGPHVSA 1010

Query: 284  A 282
            +
Sbjct: 1011 S 1011

>PI2R_MOUSE (P43252) Prostacyclin receptor (Prostanoid IP receptor) (PGI|
           receptor) (Prostaglandin I2 receptor)
          Length = 415

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = -1

Query: 422 PLSRSTAGRRTSPAPTARPGSCPQSRVSCAAYASSRWSGRTPQVSSAPLHNRDKIS 255
           PLSR  +GRR  PAPT+      Q++       SS  +G+   +++ PL   D  S
Sbjct: 349 PLSRPASGRRDPPAPTSL-----QAKEGSWVPLSSWGTGQVAPLTAVPLTGGDGCS 399

>ACH10_CHICK (Q9I8C7) Neuronal acetylcholine receptor protein, alpha-10 subunit|
           precursor (Nicotinic acetylcholine receptor subunit
           alpha 10) (NACHR alpha 10) (Alpha 10 nAChR)
          Length = 452

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
 Frame = -1

Query: 434 SAGQPLSRSTAGR--RTSPAPTARPGSCPQSRVSCAAYA 324
           S G+P    T G   R  P     PG CP+SR  C  +A
Sbjct: 358 SCGRPQREGTGGMGPRDPPGEGVEPGLCPRSRCLCHHHA 396

>CO9A2_MOUSE (Q07643) Collagen alpha-2(IX) chain precursor|
          Length = 688

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -1

Query: 428 GQPLSRSTAGRRTSPAPTARPGSC-PQSRVSCAAYASSR 315
           G P +   AGR   P P   PG C P + +  +AY S+R
Sbjct: 640 GSPGAPGEAGRPGRPGPVGLPGFCEPAACLGASAYTSAR 678

>CAPP_RALSO (Q8XWW2) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase)|
           (PEPC)
          Length = 985

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -1

Query: 437 SSAGQPLSRSTAGRRTSPAPTAR-PGSCPQSRVSCAAYASSRWSGRTPQVSSAPL 276
           S+A +  SR+T  R+T PAP ++ P   P      A   +SR S  +      PL
Sbjct: 4   SAARRASSRATPARKTPPAPASQTPAPSPGGTAGTALGPTSRRSSGSAAAKDQPL 58

>ZN710_MOUSE (Q3U288) Zinc finger protein 710|
          Length = 666

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 16/75 (21%)
 Frame = -3

Query: 435 VCGATFVPIYR---------GQKDVSCPYCASRFVPSVEGQLC-------SICELSVVGA 304
           VCG +F  +Y          G K   CPYC+S+F  +++G L         + ++S+   
Sbjct: 553 VCGKSFNRMYNLLGHMHLHAGSKPFKCPYCSSKF--NLKGNLSRHMKVKHGVMDISLDSQ 610

Query: 303 DASGLLCSPTQSR*D 259
           D    L  P  S  D
Sbjct: 611 DPMMELAGPDPSELD 625

>TCGAP_MOUSE (Q80YF9) TC10/CDC42 GTPase-activating protein (Sorting nexin 26)|
          Length = 1305

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
 Frame = -1

Query: 404 AGRRTSPAPTARPGSCPQSRVSCAAYASSRWSGR--------TPQVSSAPLHNRDK 261
           AGR   P P +  GS P +R+     A +R  GR        TP+  ++P+  R +
Sbjct: 546 AGRCLLPRPKSLAGSSPSTRLLTLEEAQARTQGRLGTPTEPTTPKTPASPVERRKR 601

>SP96_DICDI (P14328) Spore coat protein SP96|
          Length = 600

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = -1

Query: 437 SSAGQPLSRSTAGRRTSPAPTARPGSCPQSRVSCAAYASSRWSGRTPQVSSA 282
           SSA      S+A   +SP+ +A   S P S  S ++  SS  S  +   SSA
Sbjct: 480 SSAASSSPSSSASSSSSPSSSASSSSAPSSSASSSSAPSSSASSSSASSSSA 531

>Y215_ADE02 (P03291) Hypothetical protein F-215|
          Length = 215

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -1

Query: 437 SSAGQPLSRSTAGRRTSPAPTAR-PGSCPQSRVSCAAYASSR 315
           S  G    RSTA    SPA +AR   SCP++  +C    S R
Sbjct: 95  SRRGARFRRSTAASSRSPATSARSTSSCPRAAPTCPCPLSRR 136

>VE7_BPV5 (Q8BDG6) Protein E7|
          Length = 124

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 432 CGATFVPIYRGQKDVSCPYCASR 364
           C + F  + RG  D+ CP+CASR
Sbjct: 98  CISQFEQLLRGPLDLLCPHCASR 120

>ZN710_HUMAN (Q8N1W2) Zinc finger protein 710|
          Length = 664

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 9/34 (26%)
 Frame = -3

Query: 435 VCGATFVPIYR---------GQKDVSCPYCASRF 361
           VCG +F  +Y          G K   CPYC+S+F
Sbjct: 551 VCGKSFNRMYNLLGHMHLHAGSKPFKCPYCSSKF 584

>RGYR1_SULTO (Q971T7) Reverse gyrase 1 [Includes: Helicase (EC 3.6.1.-);|
           Topoisomerase (EC 5.99.1.3)]
          Length = 1156

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -3

Query: 432 CGATFVPIYRGQKDVSCPYCASRFVPSVEGQLCSICELS 316
           CG TF       K  +CPYC S F+ S E  + ++ +LS
Sbjct: 661 CGKTFTI-----KSNTCPYCGSVFISSSEKVVSALRKLS 694

>CWC21_USTMA (Q4P0G6) Pre-mRNA-splicing factor CWC21|
          Length = 348

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -1

Query: 437 SSAGQPLSRSTAGRRTSPAPTARPGSCPQSRVSCAAYASSRWS 309
           S +  PLS S + R  SP+ +  P  C  SR    A+   R S
Sbjct: 289 SRSRSPLSHSRSSRSRSPSRSRSPSRCASSRSRSPAHRPRRHS 331

>CHD9_HUMAN (Q3L8U1) Chromodomain-helicase-DNA-binding protein 9 (EC 3.6.1.-)|
            (ATP-dependent helicase CHD9) (CHD-9) (Chromatin-related
            mesenchymal modulator) (CReMM) (Chromatin remodeling
            factor CHROM1) (Peroxisomal proliferator-activated
            receptor A-inter
          Length = 2897

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 16/58 (27%), Positives = 30/58 (51%)
 Frame = -1

Query: 416  SRSTAGRRTSPAPTARPGSCPQSRVSCAAYASSRWSGRTPQVSSAPLHNRDKISGDDD 243
            SRS++   +S    +R GS   S  SC++ +SS  S  +   SS+   + +  S +++
Sbjct: 2145 SRSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSTSSSSSSSSSSSEESDSDEEE 2202


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,375,179
Number of Sequences: 219361
Number of extensions: 1033077
Number of successful extensions: 3639
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 3448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3636
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)