ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl29f08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complete sequence Length = 114996 Score = 733 bits (370), Expect = 0.0 Identities = 420/437 (96%), Gaps = 3/437 (0%) Strand = Plus / Plus Query: 1 ggatctgtccaaaaatcctacaccgtttgttgatgattgaccaaccacgaccgtatcagg 60 |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| Sbjct: 690 ggatctgtccaaaaatcctacaccgtttgttgatgattgaccaaccgcagccgtatcagg 749 Query: 61 ccgagatcgatcgatgacgcnnnnnnnnnngggggaagaaacgacgcaatggaaccaatt 120 |||||||| ||||||||||| |||||||||||||||||||||||||||||| Sbjct: 750 ccgagatcaatcgatgacgcaaaaaaaa--gggggaagaaacgacgcaatggaaccaatt 807 Query: 121 atactatacttattcctcgcaagttgggtgataaaaaatctctggtaggtagaatataac 180 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 808 atactatacttattcctcgcaagttgggtgataaaaa-tctctggtaggtagaatataac 866 Query: 181 tgacacaacagtcttcgaactggagatacaaacatgatgaacacggaggtgaagccacaa 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 867 tgacacaacagtcttcgaactggagatacaaacatgatgaacacggaggtgaagccacaa 926 Query: 241 tagtcgtcgtcgccacttatcttatctcgattgtgtaggggagcagaggagacctgaggc 300 |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 927 tagtcgtcgttgccacttatcttatctcgattgtgtaggggagcagaggaggcctgaggc 986 Query: 301 gtccgccccgaccaccgagagctcgcatatgctgcacagctgaccctcgactgagggcac 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 987 gtccgccccgaccaccgagagctcgcatatgctgcacagctgaccctcgactgagggcac 1046 Query: 361 gaaccgggacgcgcagtaggggcaggagacgtccttctgcccgcggtagatcgggacaaa 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1047 gaaccgggacgcgcagtaggggcaggagacgtccttctgcccgcggtagatcgggacaaa 1106 Query: 421 ggttgccccgcagacga 437 ||||||||||||||||| Sbjct: 1107 ggttgccccgcagacga 1123
>gb|AF176226.1|AF176226 Triticum aestivum COP alpha homolog mRNA, partial cds Length = 1826 Score = 67.9 bits (34), Expect = 3e-08 Identities = 55/62 (88%) Strand = Plus / Minus Query: 270 attgtgtaggggagcagaggagacctgaggcgtccgccccgaccaccgagagctcgcata 329 |||||||||||||||| ||||| || ||||||||||| |||||||| | |||||||||| Sbjct: 1591 attgtgtaggggagcacaggaggcccgaggcgtccgcgccgaccacagccagctcgcata 1532 Query: 330 tg 331 || Sbjct: 1531 tg 1530
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 61.9 bits (31), Expect = 2e-06 Identities = 121/151 (80%) Strand = Plus / Plus Query: 261 cttatctcgattgtgtaggggagcagaggagacctgaggcgtccgccccgaccaccgaga 320 |||||||||| || ||||||||||||||||| ||||| || || || || ||||| | | Sbjct: 28424885 cttatctcgactgcgtaggggagcagaggaggcctgaagcatctgcaccaaccacggcaa 28424944 Query: 321 gctcgcatatgctgcacagctgaccctcgactgagggcacgaaccgggacgcgcagtagg 380 |||| |||||| | || ||||| || |||| || || || |||||||| | ||||| | Sbjct: 28424945 gctcacatatggtacaaagctgcccttcgatcgaaggaacaaaccgggagccacagtacg 28425004 Query: 381 ggcaggagacgtccttctgcccgcggtagat 411 ||||||| || |||||||| || |||||||| Sbjct: 28425005 ggcaggaaacatccttctggccacggtagat 28425035
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 61.9 bits (31), Expect = 2e-06 Identities = 121/151 (80%) Strand = Plus / Plus Query: 261 cttatctcgattgtgtaggggagcagaggagacctgaggcgtccgccccgaccaccgaga 320 |||||||||| || ||||||||||||||||| ||||| || || || || ||||| | | Sbjct: 28516209 cttatctcgactgcgtaggggagcagaggaggcctgaagcatctgcaccaaccacggcaa 28516268 Query: 321 gctcgcatatgctgcacagctgaccctcgactgagggcacgaaccgggacgcgcagtagg 380 |||| |||||| | || ||||| || |||| || || || |||||||| | ||||| | Sbjct: 28516269 gctcacatatggtacaaagctgcccttcgatcgaaggaacaaaccgggagccacagtacg 28516328 Query: 381 ggcaggagacgtccttctgcccgcggtagat 411 ||||||| || |||||||| || |||||||| Sbjct: 28516329 ggcaggaaacatccttctggccacggtagat 28516359
>gb|AC082645.13|AC082645 Oryza sativa chromosome 3 BAC OSJNBb0033N16 genomic sequence, complete sequence Length = 143681 Score = 61.9 bits (31), Expect = 2e-06 Identities = 121/151 (80%) Strand = Plus / Plus Query: 261 cttatctcgattgtgtaggggagcagaggagacctgaggcgtccgccccgaccaccgaga 320 |||||||||| || ||||||||||||||||| ||||| || || || || ||||| | | Sbjct: 19015 cttatctcgactgcgtaggggagcagaggaggcctgaagcatctgcaccaaccacggcaa 19074 Query: 321 gctcgcatatgctgcacagctgaccctcgactgagggcacgaaccgggacgcgcagtagg 380 |||| |||||| | || ||||| || |||| || || || |||||||| | ||||| | Sbjct: 19075 gctcacatatggtacaaagctgcccttcgatcgaaggaacaaaccgggagccacagtacg 19134 Query: 381 ggcaggagacgtccttctgcccgcggtagat 411 ||||||| || |||||||| || |||||||| Sbjct: 19135 ggcaggaaacatccttctggccacggtagat 19165
>dbj|AK100286.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023075G08, full insert sequence Length = 4221 Score = 61.9 bits (31), Expect = 2e-06 Identities = 121/151 (80%) Strand = Plus / Minus Query: 261 cttatctcgattgtgtaggggagcagaggagacctgaggcgtccgccccgaccaccgaga 320 |||||||||| || ||||||||||||||||| ||||| || || || || ||||| | | Sbjct: 3802 cttatctcgactgcgtaggggagcagaggaggcctgaagcatctgcaccaaccacggcaa 3743 Query: 321 gctcgcatatgctgcacagctgaccctcgactgagggcacgaaccgggacgcgcagtagg 380 |||| |||||| | || ||||| || |||| || || || |||||||| | ||||| | Sbjct: 3742 gctcacatatggtacaaagctgcccttcgatcgaaggaacaaaccgggagccacagtacg 3683 Query: 381 ggcaggagacgtccttctgcccgcggtagat 411 ||||||| || |||||||| || |||||||| Sbjct: 3682 ggcaggaaacatccttctggccacggtagat 3652
>dbj|AK059218.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-C10, full insert sequence Length = 1032 Score = 61.9 bits (31), Expect = 2e-06 Identities = 121/151 (80%) Strand = Plus / Minus Query: 261 cttatctcgattgtgtaggggagcagaggagacctgaggcgtccgccccgaccaccgaga 320 |||||||||| || ||||||||||||||||| ||||| || || || || ||||| | | Sbjct: 906 cttatctcgactgcgtaggggagcagaggaggcctgaagcatctgcaccaaccacggcaa 847 Query: 321 gctcgcatatgctgcacagctgaccctcgactgagggcacgaaccgggacgcgcagtagg 380 |||| |||||| | || ||||| || |||| || || || |||||||| | ||||| | Sbjct: 846 gctcacatatggtacaaagctgcccttcgatcgaaggaacaaaccgggagccacagtacg 787 Query: 381 ggcaggagacgtccttctgcccgcggtagat 411 ||||||| || |||||||| || |||||||| Sbjct: 786 ggcaggaaacatccttctggccacggtagat 756
>ref|XM_469513.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3657 Score = 60.0 bits (30), Expect = 6e-06 Identities = 120/150 (80%) Strand = Plus / Minus Query: 262 ttatctcgattgtgtaggggagcagaggagacctgaggcgtccgccccgaccaccgagag 321 ||||||||| || ||||||||||||||||| ||||| || || || || ||||| | || Sbjct: 3657 ttatctcgactgcgtaggggagcagaggaggcctgaagcatctgcaccaaccacggcaag 3598 Query: 322 ctcgcatatgctgcacagctgaccctcgactgagggcacgaaccgggacgcgcagtaggg 381 ||| |||||| | || ||||| || |||| || || || |||||||| | ||||| || Sbjct: 3597 ctcacatatggtacaaagctgcccttcgatcgaaggaacaaaccgggagccacagtacgg 3538 Query: 382 gcaggagacgtccttctgcccgcggtagat 411 |||||| || |||||||| || |||||||| Sbjct: 3537 gcaggaaacatccttctggccacggtagat 3508
>ref|XM_450153.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1736 Score = 48.1 bits (24), Expect = 0.024 Identities = 117/148 (79%) Strand = Plus / Minus Query: 261 cttatctcgattgtgtaggggagcagaggagacctgaggcgtccgccccgaccaccgaga 320 |||||||| | || ||||||||||||||||| ||||| || || || || ||||| | | Sbjct: 1516 cttatctcaactgcgtaggggagcagaggaggcctgaagcatctgcaccaaccacagcaa 1457 Query: 321 gctcgcatatgctgcacagctgaccctcgactgagggcacgaaccgggacgcgcagtagg 380 |||| |||||| | || ||||| || |||| || || || |||||||| | ||||| | Sbjct: 1456 gctcacatatggtacaaagctgcccttcgatggaaggaacaaaccgggatccacagtacg 1397 Query: 381 ggcaggagacgtccttctgcccgcggta 408 ||||||| || |||||||| || ||||| Sbjct: 1396 ggcaggaaacatccttctggccacggta 1369
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 48.1 bits (24), Expect = 0.024 Identities = 117/148 (79%) Strand = Plus / Plus Query: 261 cttatctcgattgtgtaggggagcagaggagacctgaggcgtccgccccgaccaccgaga 320 |||||||| | || ||||||||||||||||| ||||| || || || || ||||| | | Sbjct: 2074192 cttatctcaactgcgtaggggagcagaggaggcctgaagcatctgcaccaaccacagcaa 2074251 Query: 321 gctcgcatatgctgcacagctgaccctcgactgagggcacgaaccgggacgcgcagtagg 380 |||| |||||| | || ||||| || |||| || || || |||||||| | ||||| | Sbjct: 2074252 gctcacatatggtacaaagctgcccttcgatggaaggaacaaaccgggatccacagtacg 2074311 Query: 381 ggcaggagacgtccttctgcccgcggta 408 ||||||| || |||||||| || ||||| Sbjct: 2074312 ggcaggaaacatccttctggccacggta 2074339
>dbj|AP005680.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1352_A10 Length = 111655 Score = 48.1 bits (24), Expect = 0.024 Identities = 117/148 (79%) Strand = Plus / Plus Query: 261 cttatctcgattgtgtaggggagcagaggagacctgaggcgtccgccccgaccaccgaga 320 |||||||| | || ||||||||||||||||| ||||| || || || || ||||| | | Sbjct: 109559 cttatctcaactgcgtaggggagcagaggaggcctgaagcatctgcaccaaccacagcaa 109618 Query: 321 gctcgcatatgctgcacagctgaccctcgactgagggcacgaaccgggacgcgcagtagg 380 |||| |||||| | || ||||| || |||| || || || |||||||| | ||||| | Sbjct: 109619 gctcacatatggtacaaagctgcccttcgatggaaggaacaaaccgggatccacagtacg 109678 Query: 381 ggcaggagacgtccttctgcccgcggta 408 ||||||| || |||||||| || ||||| Sbjct: 109679 ggcaggaaacatccttctggccacggta 109706
>dbj|AK105672.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-A08, full insert sequence Length = 3045 Score = 48.1 bits (24), Expect = 0.024 Identities = 117/148 (79%) Strand = Plus / Minus Query: 261 cttatctcgattgtgtaggggagcagaggagacctgaggcgtccgccccgaccaccgaga 320 |||||||| | || ||||||||||||||||| ||||| || || || || ||||| | | Sbjct: 2581 cttatctcaactgcgtaggggagcagaggaggcctgaagcatctgcaccaaccacagcaa 2522 Query: 321 gctcgcatatgctgcacagctgaccctcgactgagggcacgaaccgggacgcgcagtagg 380 |||| |||||| | || ||||| || |||| || || || |||||||| | ||||| | Sbjct: 2521 gctcacatatggtacaaagctgcccttcgatggaaggaacaaaccgggatccacagtacg 2462 Query: 381 ggcaggagacgtccttctgcccgcggta 408 ||||||| || |||||||| || ||||| Sbjct: 2461 ggcaggaaacatccttctggccacggta 2434
>dbj|AK103786.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033145I16, full insert sequence Length = 4284 Score = 48.1 bits (24), Expect = 0.024 Identities = 117/148 (79%) Strand = Plus / Minus Query: 261 cttatctcgattgtgtaggggagcagaggagacctgaggcgtccgccccgaccaccgaga 320 |||||||| | || ||||||||||||||||| ||||| || || || || ||||| | | Sbjct: 3885 cttatctcaactgcgtaggggagcagaggaggcctgaagcatctgcaccaaccacagcaa 3826 Query: 321 gctcgcatatgctgcacagctgaccctcgactgagggcacgaaccgggacgcgcagtagg 380 |||| |||||| | || ||||| || |||| || || || |||||||| | ||||| | Sbjct: 3825 gctcacatatggtacaaagctgcccttcgatggaaggaacaaaccgggatccacagtacg 3766 Query: 381 ggcaggagacgtccttctgcccgcggta 408 ||||||| || |||||||| || ||||| Sbjct: 3765 ggcaggaaacatccttctggccacggta 3738
>dbj|AK058402.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-015-B07, full insert sequence Length = 1736 Score = 48.1 bits (24), Expect = 0.024 Identities = 117/148 (79%) Strand = Plus / Minus Query: 261 cttatctcgattgtgtaggggagcagaggagacctgaggcgtccgccccgaccaccgaga 320 |||||||| | || ||||||||||||||||| ||||| || || || || ||||| | | Sbjct: 1516 cttatctcaactgcgtaggggagcagaggaggcctgaagcatctgcaccaaccacagcaa 1457 Query: 321 gctcgcatatgctgcacagctgaccctcgactgagggcacgaaccgggacgcgcagtagg 380 |||| |||||| | || ||||| || |||| || || || |||||||| | ||||| | Sbjct: 1456 gctcacatatggtacaaagctgcccttcgatggaaggaacaaaccgggatccacagtacg 1397 Query: 381 ggcaggagacgtccttctgcccgcggta 408 ||||||| || |||||||| || ||||| Sbjct: 1396 ggcaggaaacatccttctggccacggta 1369
>gb|AC157556.12| Mus musculus chromosome 1, clone RP24-267A19, complete sequence Length = 198267 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 197 gaactggagatacaaacatga 217 ||||||||||||||||||||| Sbjct: 145020 gaactggagatacaaacatga 145000
>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome Length = 4607203 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 244 tcgtcgtcgccacttatctt 263 |||||||||||||||||||| Sbjct: 3481636 tcgtcgtcgccacttatctt 3481617
>gb|AC101854.8| Mus musculus chromosome 1, clone RP23-298H18, complete sequence Length = 190474 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 276 taggggagcagaggagacctgagg 299 |||||||||||||| ||||||||| Sbjct: 23728 taggggagcagaggggacctgagg 23751
>gb|AC133161.4| Mus musculus BAC clone RP24-534C7 from chromosome 1, complete sequence Length = 157891 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 276 taggggagcagaggagacctgagg 299 |||||||||||||| ||||||||| Sbjct: 124089 taggggagcagaggggacctgagg 124112
>gb|AC005021.1| Homo sapiens BAC clone GS1-293C5 from 7, complete sequence Length = 64607 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 aaaaatctctggtaggtaga 173 |||||||||||||||||||| Sbjct: 61607 aaaaatctctggtaggtaga 61626
>gb|AC109636.3| Homo sapiens BAC clone RP11-19D21 from 4, complete sequence Length = 71715 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 aaaaaatctctggtaggtag 172 |||||||||||||||||||| Sbjct: 42043 aaaaaatctctggtaggtag 42062
>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome Length = 4599354 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 tcgtcgtcgccacttatctt 263 |||||||||||||||||||| Sbjct: 4291068 tcgtcgtcgccacttatctt 4291087
>gb|AY210982.1| Homo sapiens paraoxonase 2 (PON2) gene, complete cds Length = 32705 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 aaaaatctctggtaggtaga 173 |||||||||||||||||||| Sbjct: 2452 aaaaatctctggtaggtaga 2433
>ref|XM_308807.2| Anopheles gambiae str. PEST ENSANGP00000021654 (ENSANGG00000019165), partial mRNA Length = 2516 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 298 ggcgtccgccccgaccaccg 317 |||||||||||||||||||| Sbjct: 1017 ggcgtccgccccgaccaccg 998 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,658,960 Number of Sequences: 3902068 Number of extensions: 2658960 Number of successful extensions: 45436 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 45270 Number of HSP's gapped (non-prelim): 165 length of query: 437 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 415 effective length of database: 17,147,199,772 effective search space: 7116087905380 effective search space used: 7116087905380 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
