ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl29f07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KIF3C_HUMAN (O14782) Kinesin-like protein KIF3C 30 3.7
2BUN2_DROME (Q24523) Protein bunched, class 2 isoform (Protein sh... 29 6.3
3VATC_DROME (Q9V7N5) Vacuolar ATP synthase subunit C (EC 3.6.3.14... 28 8.2

>KIF3C_HUMAN (O14782) Kinesin-like protein KIF3C|
          Length = 793

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = -3

Query: 304 PDTSRPAASVASQANGVGGGRGDAA---KLKEMYRLSLKSSSLGQLHA 170
           P+T+  AA+ +S   G GGG G  A   + KE  +++L  S+LG + A
Sbjct: 258 PNTAGGAATPSSGGGGGGGGSGGGAGGERPKEASKINLSLSALGNVIA 305



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>BUN2_DROME (Q24523) Protein bunched, class 2 isoform (Protein shortsighted)|
          Length = 1206

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 51  YYTRQHDRHNSHKLQSNNISYTYSSHTVTGGSA 149
           ++  QH  H   + Q  ++S  ++S TV GGSA
Sbjct: 313 HHHHQHHNHQQQQQQQTSLSQGHASLTVAGGSA 345



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>VATC_DROME (Q9V7N5) Vacuolar ATP synthase subunit C (EC 3.6.3.14) (V-ATPase C|
           subunit) (Vacuolar proton pump C subunit)
          Length = 714

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -3

Query: 304 PDTSRPAASVASQANGVGGGRGDAA 230
           P TS  AA+ AS ++G GGG G A+
Sbjct: 264 PSTSAAAAAAASNSSGGGGGGGPAS 288


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,408,375
Number of Sequences: 219361
Number of extensions: 736220
Number of successful extensions: 2434
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2434
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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