ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl29f06 |
|---|---|
| Clone Library Name | barley_pub |
>HSP83_IPONI (P51819) Heat shock protein 83| Length = 703 Score = 34.7 bits (78), Expect = 0.11 Identities = 18/66 (27%), Positives = 35/66 (53%) Frame = +2 Query: 32 NEVKQRRDGSTCFYPAVQASLRIGPHDTVASRRRDAVTTIKEWPPKQTNLATSLRDYEDE 211 NE+ + +D FY A +L++G H+ +R + A ++ + K + TSL+DY Sbjct: 401 NEIAENKDDYNKFYEAFSKNLKLGIHEDSQNRAKLA-DLLRYYSTKSGDELTSLKDYVTR 459 Query: 212 VSHGRE 229 + G++ Sbjct: 460 MKEGQK 465
>HSP81_ARATH (P27323) Heat shock protein 81-1 (HSP81-1) (Heat shock protein 83)| Length = 700 Score = 32.0 bits (71), Expect = 0.68 Identities = 17/66 (25%), Positives = 34/66 (51%) Frame = +2 Query: 32 NEVKQRRDGSTCFYPAVQASLRIGPHDTVASRRRDAVTTIKEWPPKQTNLATSLRDYEDE 211 NE+ + ++ T FY A +L++G H+ +R + A ++ K + TS +DY Sbjct: 397 NEIAENKEDYTKFYEAFSKNLKLGIHEDSQNRGKIA-DLLRYHSTKSGDEMTSFKDYVTR 455 Query: 212 VSHGRE 229 + G++ Sbjct: 456 MKEGQK 461
>Y337_RHIME (Q92SN4) UPF0102 protein R00337| Length = 122 Score = 32.0 bits (71), Expect = 0.68 Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 3/94 (3%) Frame = +2 Query: 77 AVQASLRIGPHDTVASRRRDAVTTIKEWPPKQTNLATSLRDYEDEVSHGRELPARQGHAA 256 A++ R+G D +A RR D V + + SL ED V + R+ AA Sbjct: 37 AMRYRTRLGEIDIIA-RRGDLVACV------EVKARVSL---EDAVFAVTDTAQRRIRAA 86 Query: 257 ARL---RQGDVGPLGVRRPVPANLPFRHGLHLPD 349 + L RQGD L VR + A P+R HLPD Sbjct: 87 SDLWLSRQGDFHRLSVRYDIVAVTPWRWPRHLPD 120
>HSP82_TOBAC (P36182) Heat shock protein 82 (Fragment)| Length = 499 Score = 31.6 bits (70), Expect = 0.89 Identities = 17/66 (25%), Positives = 34/66 (51%) Frame = +2 Query: 32 NEVKQRRDGSTCFYPAVQASLRIGPHDTVASRRRDAVTTIKEWPPKQTNLATSLRDYEDE 211 NE+ + ++ FY A +L++G H+ +R + A ++ K + TSL+DY Sbjct: 197 NEIAENKEDYNKFYEAFSKNLKLGIHEDSQNRAKLA-DLLRYHSTKSGDEMTSLKDYVTR 255 Query: 212 VSHGRE 229 + G++ Sbjct: 256 MKEGQK 261
>IF4G3_HUMAN (O43432) Eukaryotic translation initiation factor 4 gamma 3| (eIF-4-gamma 3) (eIF-4G 3) (eIF4G 3) (eIF-4-gamma II) (eIF4GII) Length = 1585 Score = 31.2 bits (69), Expect = 1.2 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 10/75 (13%) Frame = -1 Query: 433 SEPTFRKA-----AKKLPPPAVRQSQSIDLRASVREVEAVTE-----GKVRRNRPPYAER 284 S+P ++ A ++ PPPA R+ ++I +R + + +TE G R PP Sbjct: 115 SQPVYQSAPIIVPTQQQPPPAKREKKTIRIRDPNQGGKDITEEIMSGGGSRNPTPPIGRP 174 Query: 283 TNVPLPETRRSMSLP 239 T+ P P + +P Sbjct: 175 TSTPTPPQQLPSQVP 189
>RT22_HUMAN (P82650) Mitochondrial 28S ribosomal protein S22 (S22mt) (MRP-S22)| Length = 360 Score = 30.8 bits (68), Expect = 1.5 Identities = 19/56 (33%), Positives = 27/56 (48%) Frame = -1 Query: 436 NSEPTFRKAAKKLPPPAVRQSQSIDLRASVREVEAVTEGKVRRNRPPYAERTNVPL 269 N + TF+ A ++L PP + L + R +AV KVR PP E VP+ Sbjct: 86 NLQKTFKPAIQELKPPTYKLMTQAQLEEATR--QAVEAAKVRLKMPPVLEE-RVPI 138
>IRS1A_XENLA (Q91615) Insulin receptor substrate 1-A (IRS1-A) (xIRS-1-A)| (XIRS-L) Length = 885 Score = 30.4 bits (67), Expect = 2.0 Identities = 18/54 (33%), Positives = 26/54 (48%) Frame = -1 Query: 394 PPAVRQSQSIDLRASVREVEAVTEGKVRRNRPPYAERTNVPLPETRRSMSLPRG 233 PP ++SI L +S ++ G+V N P A +N L E RS L +G Sbjct: 688 PPTRLSAKSITLSSSKSNYAEMSSGRVSDNIPAIAPASNSSLSEASRSSLLGQG 741
>HSP90_CANAL (P46598) Heat shock protein 90 homolog| Length = 707 Score = 30.4 bits (67), Expect = 2.0 Identities = 16/64 (25%), Positives = 32/64 (50%) Frame = +2 Query: 11 KPINKDVNEVKQRRDGSTCFYPAVQASLRIGPHDTVASRRRDAVTTIKEWPPKQTNLATS 190 K + + NE+ + ++ FY A ++++G H+ A R+ ++ + K + TS Sbjct: 395 KKMIETFNEISEDQEQFNQFYTAFSKNIKLGIHED-AQNRQSLAKLLRFYSTKSSEEMTS 453 Query: 191 LRDY 202 L DY Sbjct: 454 LSDY 457
>HSP90_ASPFU (P40292) Heat shock protein 90 (Heat shock protein hsp1) (65 kDa| IgE-binding protein) (Allergen Asp f 12) Length = 706 Score = 30.4 bits (67), Expect = 2.0 Identities = 17/57 (29%), Positives = 29/57 (50%) Frame = +2 Query: 32 NEVKQRRDGSTCFYPAVQASLRIGPHDTVASRRRDAVTTIKEWPPKQTNLATSLRDY 202 NE+ + R+ FY A ++++G H+ A R+ ++ K + ATSL DY Sbjct: 402 NEIAEDREQFDKFYSAFSKNIKLGIHED-AQNRQTLAKLLRYQSTKSGDEATSLADY 457
>IRS1B_XENLA (P84770) Insulin receptor substrate 1-B (IRS1-B) (xIRS-1-B) (XIRS-L')| Length = 1088 Score = 30.4 bits (67), Expect = 2.0 Identities = 18/54 (33%), Positives = 26/54 (48%) Frame = -1 Query: 394 PPAVRQSQSIDLRASVREVEAVTEGKVRRNRPPYAERTNVPLPETRRSMSLPRG 233 PP ++SI L +S ++ G+V N P A +N L E RS L +G Sbjct: 891 PPTRLSAKSITLSSSKSNYAEMSSGRVSDNIPAIAPASNSSLSEASRSSLLGQG 944
>Y2164_MYCBO (P67227) Hypothetical UPF0098 protein Mb2164c| Length = 176 Score = 29.3 bits (64), Expect = 4.4 Identities = 24/69 (34%), Positives = 30/69 (43%) Frame = +2 Query: 134 DAVTTIKEWPPKQTNLATSLRDYEDEVSHGRELPARQGHAAARLRQGDVGPLGVRRPVPA 313 DA T W NL ++ + + V GRELP A L V G+RR V A Sbjct: 70 DAPTLSGFWHWAVANLPANVTELPEGVGDGRELPG----GALTL----VNDAGMRRYVGA 121 Query: 314 NLPFRHGLH 340 P HG+H Sbjct: 122 APPPGHGVH 130
>Y2140_MYCTU (P67226) Hypothetical UPF0098 protein Rv2140c/MT2198| Length = 176 Score = 29.3 bits (64), Expect = 4.4 Identities = 24/69 (34%), Positives = 30/69 (43%) Frame = +2 Query: 134 DAVTTIKEWPPKQTNLATSLRDYEDEVSHGRELPARQGHAAARLRQGDVGPLGVRRPVPA 313 DA T W NL ++ + + V GRELP A L V G+RR V A Sbjct: 70 DAPTLSGFWHWAVANLPANVTELPEGVGDGRELPG----GALTL----VNDAGMRRYVGA 121 Query: 314 NLPFRHGLH 340 P HG+H Sbjct: 122 APPPGHGVH 130
>IF4G3_MOUSE (Q80XI3) Eukaryotic translation initiation factor 4 gamma 3| (eIF-4-gamma 3) (eIF-4G 3) (eIF4G 3) (eIF-4-gamma II) (eIF4GII) Length = 1579 Score = 29.3 bits (64), Expect = 4.4 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 10/75 (13%) Frame = -1 Query: 433 SEPTFRKA-----AKKLPPPAVRQSQSIDLRASVREVEAVTE-----GKVRRNRPPYAER 284 S+P ++ A ++ PPPA R+ ++I +R + + +TE G R PP Sbjct: 115 SQPVYQSAPIIVPTQQQPPPAKREKKTIRIRDPNQGGKDITEEIMSGGGSRNPTPPIGRP 174 Query: 283 TNVPLPETRRSMSLP 239 + P P + +P Sbjct: 175 ASTPTPPQQLPSQVP 189
>CDT1_HUMAN (Q9H211) DNA replication factor Cdt1 (Double parked homolog) (DUP)| Length = 546 Score = 28.5 bits (62), Expect = 7.6 Identities = 16/59 (27%), Positives = 25/59 (42%) Frame = -1 Query: 418 RKAAKKLPPPAVRQSQSIDLRASVREVEAVTEGKVRRNRPPYAERTNVPLPETRRSMSL 242 R ++ PP + R ++R + T G +R RPP A + P RR + L Sbjct: 14 RPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRL 72
>UL06_EHV1V (P84458) Virion gene 56 protein| Length = 753 Score = 28.5 bits (62), Expect = 7.6 Identities = 20/73 (27%), Positives = 33/73 (45%) Frame = +2 Query: 41 KQRRDGSTCFYPAVQASLRIGPHDTVASRRRDAVTTIKEWPPKQTNLATSLRDYEDEVSH 220 K ++ G+ A + S+ G + + + TI++ + L LRD E E++H Sbjct: 429 KTKQGGNMPVQEAFRTSVINGINGMLEGYVNNLFKTIEDLRTGNSGLLDQLRDRESEITH 488 Query: 221 GRELPARQGHAAA 259 RE R AAA Sbjct: 489 LREQLLRVSQAAA 501
>UL06_EHV1B (P28944) Virion gene 56 protein| Length = 753 Score = 28.5 bits (62), Expect = 7.6 Identities = 20/73 (27%), Positives = 33/73 (45%) Frame = +2 Query: 41 KQRRDGSTCFYPAVQASLRIGPHDTVASRRRDAVTTIKEWPPKQTNLATSLRDYEDEVSH 220 K ++ G+ A + S+ G + + + TI++ + L LRD E E++H Sbjct: 429 KTKQGGNMPVQEAFRTSVINGINGMLEGYVNNLFKTIEDLRTGNSGLLDQLRDRESEITH 488 Query: 221 GRELPARQGHAAA 259 RE R AAA Sbjct: 489 LREQLLRVSQAAA 501
>TYRA_ECOLI (P07023) T-protein [Includes: Chorismate mutase (EC 5.4.99.5) (CM);| Prephenate dehydrogenase (EC 1.3.1.12) (PDH)] Length = 373 Score = 28.5 bits (62), Expect = 7.6 Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 1/66 (1%) Frame = +2 Query: 185 TSLRDYEDEVSHGRELPARQGHAAARLRQ-GDVGPLGVRRPVPANLPFRHGLHLPDRRPE 361 T+LRD DEV A A RL +VG + R +P +P R L RR E Sbjct: 6 TALRDQIDEVDK-----ALLNLLAKRLELVAEVGEVKSRFGLPIYVPEREASMLASRRAE 60 Query: 362 VDALGL 379 +ALG+ Sbjct: 61 AEALGV 66
>PYRG_TREPA (O83327) CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) (CTP| synthetase) Length = 577 Score = 28.5 bits (62), Expect = 7.6 Identities = 10/22 (45%), Positives = 13/22 (59%) Frame = +3 Query: 63 HASTQPYKPACGSDRTTPLHHA 128 H PY P+CG +T PL H+ Sbjct: 175 HLGLVPYLPSCGEMKTKPLQHS 196
>ZN469_HUMAN (Q96JG9) Zinc finger protein 469 (Fragment)| Length = 2469 Score = 28.5 bits (62), Expect = 7.6 Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 2/80 (2%) Frame = +3 Query: 60 PHASTQPYKPACGSDRTTPLHHADAMPSQQSKNGLLNKPT*LRAYET--TKTKFHTGASF 233 P A +P P + TP P S+N P+ R E T+ K G +F Sbjct: 2354 PSAPDKP--PRTPRKQATPSRVLPTKPKPNSQNKPRPPPSEQRKAEPGHTQRKDRLGKAF 2411 Query: 234 PRGRDMLRRVSGKGTLVRSA 293 P+GR +LR +GT V A Sbjct: 2412 PQGRPLLRPPK-RGTAVHGA 2430
>COFE_HALSA (Q9HME1) F420-0:gamma-glutamyl ligase (EC 6.3.2.-)| Length = 253 Score = 28.5 bits (62), Expect = 7.6 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = +2 Query: 230 LPARQGHAAARLRQGDVGPLGVRRPVPANLPFRHG 334 LP R +AAR++ G +GV + PFRHG Sbjct: 125 LPKRPAESAARIQAGLAADVGVVVTDTSGRPFRHG 159
>M3K1_RAT (Q62925) Mitogen-activated protein kinase kinase kinase 1 (EC| 2.7.11.25) (MAPK/ERK kinase kinase 1) (MEK kinase 1) (MEKK 1) Length = 1493 Score = 28.5 bits (62), Expect = 7.6 Identities = 32/128 (25%), Positives = 49/128 (38%), Gaps = 11/128 (8%) Frame = +2 Query: 5 ENKPINKDVNEVKQRRDGSTCFYPAVQASLRIGPHDTVASRRRDAVTTIKEWPPK----- 169 ENK K ++++ R + + H+ + R R +K P K Sbjct: 155 ENKETLKGLHKMDDRPEERMIREKLKATCMPAWKHEWLERRNRRGPVVVKPIPIKGDGSE 214 Query: 170 QTNLATSLRDYEDEVSHGRELPARQGH------AAARLRQGDVGPLGVRRPVPANLPFRH 331 +NLA L + E G PA +G ++ R G GVRR + +PF+ Sbjct: 215 MSNLAAEL---QGEGQAGSAAPAPKGRRSPSPGSSPSGRSGKPESPGVRRKRVSPVPFQS 271 Query: 332 GLHLPDRR 355 G P RR Sbjct: 272 GRITPPRR 279
>UDPE_NPVLD (P41713) Ecdysteroid UDP-glucosyltransferase precursor (EC 2.4.1.-)| Length = 506 Score = 28.5 bits (62), Expect = 7.6 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = +2 Query: 299 RPVPANLPFRHGLHLPDRRPE 361 RPVP ++ + GLHL DRR E Sbjct: 256 RPVPPSVQYLGGLHLHDRRAE 276
>EXOP_RHIME (P33698) Succinoglycan biosynthesis transport protein exoP| Length = 786 Score = 28.1 bits (61), Expect = 9.9 Identities = 17/60 (28%), Positives = 29/60 (48%) Frame = +2 Query: 92 LRIGPHDTVASRRRDAVTTIKEWPPKQTNLATSLRDYEDEVSHGRELPARQGHAAARLRQ 271 L++ +DT+ + R V +KEW T L + D +E + R+ AAA ++Q Sbjct: 118 LKLSENDTILNPPRSPVDMVKEWLKTATGLFSGGPDVTEEAARN----GRRQKAAAIIQQ 173 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,683,308 Number of Sequences: 219361 Number of extensions: 965879 Number of successful extensions: 4029 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 3889 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4016 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2570413340 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
