Clone Name | rbastl29f06 |
---|---|
Clone Library Name | barley_pub |
>emb|AL606588.4|OSJN00023 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0016O02, complete sequence Length = 167988 Score = 54.0 bits (27), Expect = 4e-04 Identities = 60/71 (84%) Strand = Plus / Plus Query: 213 tttcacacgggcgcgagcttcccgcgcggcagggacatgctgcggcgcgtctccggcaag 272 ||||||||| | || | ||||||||| ||||| || | |||||| || |||||||| ||| Sbjct: 64855 tttcacacgagagccatcttcccgcggggcagagagacgctgcgccgggtctccggtaag 64914 Query: 273 gggacgttggt 283 ||||||||||| Sbjct: 64915 gggacgttggt 64925
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 54.0 bits (27), Expect = 4e-04 Identities = 60/71 (84%) Strand = Plus / Plus Query: 213 tttcacacgggcgcgagcttcccgcgcggcagggacatgctgcggcgcgtctccggcaag 272 ||||||||| | || | ||||||||| ||||| || | |||||| || |||||||| ||| Sbjct: 23347534 tttcacacgagagccatcttcccgcggggcagagagacgctgcgccgggtctccggtaag 23347593 Query: 273 gggacgttggt 283 ||||||||||| Sbjct: 23347594 gggacgttggt 23347604
>emb|BX901899.9| Zebrafish DNA sequence from clone DKEY-255N6 in linkage group 16, complete sequence Length = 127034 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 gagaacaaaccaatcaacaaa 25 ||||||||||||||||||||| Sbjct: 36855 gagaacaaaccaatcaacaaa 36835
>dbj|AP005481.2| Homo sapiens genomic DNA, chromosome 18 clone:RP11-161I6, complete sequence Length = 56000 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 4 ggagaacaaaccaatcaacaaagac 28 |||||||||||||| |||||||||| Sbjct: 47468 ggagaacaaaccaaccaacaaagac 47444
>emb|AL845283.4| Mouse DNA sequence from clone RP23-151F21 on chromosome 2, complete sequence Length = 178403 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 8 aacaaaccaatcaacaaagac 28 ||||||||||||||||||||| Sbjct: 11892 aacaaaccaatcaacaaagac 11872
>gb|AC158553.13| Mus musculus chromosome 8, clone RP23-349E13, complete sequence Length = 213309 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 aacaaaccaatcaacaaaga 27 |||||||||||||||||||| Sbjct: 4954 aacaaaccaatcaacaaaga 4935
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 413 cttccggaacgtcggttcgc 432 |||||||||||||||||||| Sbjct: 1366522 cttccggaacgtcggttcgc 1366541
>gb|AC157774.5| Mus musculus chromosome 8, clone RP23-423E20, complete sequence Length = 198967 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 aacaaaccaatcaacaaaga 27 |||||||||||||||||||| Sbjct: 188210 aacaaaccaatcaacaaaga 188191
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 382 gaaccgccggcggcgggagc 401 |||||||||||||||||||| Sbjct: 7494286 gaaccgccggcggcgggagc 7494267 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,733,768 Number of Sequences: 3902068 Number of extensions: 2733768 Number of successful extensions: 97742 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 97533 Number of HSP's gapped (non-prelim): 209 length of query: 439 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 417 effective length of database: 17,147,199,772 effective search space: 7150382304924 effective search space used: 7150382304924 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)