ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl29f06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL606588.4|OSJN00023 Oryza sativa genomic DNA, chromosome 4,... 54 4e-04
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
3emb|BX901899.9| Zebrafish DNA sequence from clone DKEY-255N6 in ... 42 1.5
4dbj|AP005481.2| Homo sapiens genomic DNA, chromosome 18 clone:RP... 42 1.5
5emb|AL845283.4| Mouse DNA sequence from clone RP23-151F21 on chr... 42 1.5
6gb|AC158553.13| Mus musculus chromosome 8, clone RP23-349E13, co... 40 5.9
7gb|CP000249.1| Frankia sp. CcI3, complete genome 40 5.9
8gb|AC157774.5| Mus musculus chromosome 8, clone RP23-423E20, com... 40 5.9
9dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 5.9

>emb|AL606588.4|OSJN00023 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0016O02,
             complete sequence
          Length = 167988

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 60/71 (84%)
 Strand = Plus / Plus

                                                                         
Query: 213   tttcacacgggcgcgagcttcccgcgcggcagggacatgctgcggcgcgtctccggcaag 272
             ||||||||| | || | ||||||||| ||||| || | |||||| || |||||||| |||
Sbjct: 64855 tttcacacgagagccatcttcccgcggggcagagagacgctgcgccgggtctccggtaag 64914

                        
Query: 273   gggacgttggt 283
             |||||||||||
Sbjct: 64915 gggacgttggt 64925



to top

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 60/71 (84%)
 Strand = Plus / Plus

                                                                            
Query: 213      tttcacacgggcgcgagcttcccgcgcggcagggacatgctgcggcgcgtctccggcaag 272
                ||||||||| | || | ||||||||| ||||| || | |||||| || |||||||| |||
Sbjct: 23347534 tttcacacgagagccatcttcccgcggggcagagagacgctgcgccgggtctccggtaag 23347593

                           
Query: 273      gggacgttggt 283
                |||||||||||
Sbjct: 23347594 gggacgttggt 23347604



to top

>emb|BX901899.9| Zebrafish DNA sequence from clone DKEY-255N6 in linkage group 16,
             complete sequence
          Length = 127034

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 5     gagaacaaaccaatcaacaaa 25
             |||||||||||||||||||||
Sbjct: 36855 gagaacaaaccaatcaacaaa 36835



to top

>dbj|AP005481.2| Homo sapiens genomic DNA, chromosome 18 clone:RP11-161I6, complete
             sequence
          Length = 56000

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 4     ggagaacaaaccaatcaacaaagac 28
             |||||||||||||| ||||||||||
Sbjct: 47468 ggagaacaaaccaaccaacaaagac 47444



to top

>emb|AL845283.4| Mouse DNA sequence from clone RP23-151F21 on chromosome 2, complete
             sequence
          Length = 178403

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 8     aacaaaccaatcaacaaagac 28
             |||||||||||||||||||||
Sbjct: 11892 aacaaaccaatcaacaaagac 11872



to top

>gb|AC158553.13| Mus musculus chromosome 8, clone RP23-349E13, complete sequence
          Length = 213309

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 8    aacaaaccaatcaacaaaga 27
            ||||||||||||||||||||
Sbjct: 4954 aacaaaccaatcaacaaaga 4935



to top

>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 413     cttccggaacgtcggttcgc 432
               ||||||||||||||||||||
Sbjct: 1366522 cttccggaacgtcggttcgc 1366541



to top

>gb|AC157774.5| Mus musculus chromosome 8, clone RP23-423E20, complete sequence
          Length = 198967

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 8      aacaaaccaatcaacaaaga 27
              ||||||||||||||||||||
Sbjct: 188210 aacaaaccaatcaacaaaga 188191



to top

>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 382     gaaccgccggcggcgggagc 401
               ||||||||||||||||||||
Sbjct: 7494286 gaaccgccggcggcgggagc 7494267


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,733,768
Number of Sequences: 3902068
Number of extensions: 2733768
Number of successful extensions: 97742
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 97533
Number of HSP's gapped (non-prelim): 209
length of query: 439
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 417
effective length of database: 17,147,199,772
effective search space: 7150382304924
effective search space used: 7150382304924
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top