ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl29f05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MTAL1_KLULA (Q08398) Mating-type protein ALPHA1 (Transcription a... 30 2.1
2SCW11_YEAST (P53189) Probable family 17 glucosidase SCW11 precur... 30 2.7
3PCYOX_PONPY (Q5R748) Prenylcysteine oxidase precursor (EC 1.8.3.5) 29 6.0
4PCYOX_MACFA (Q95KC9) Prenylcysteine oxidase precursor (EC 1.8.3.5) 29 6.0
5PCYOX_HUMAN (Q9UHG3) Prenylcysteine oxidase precursor (EC 1.8.3.... 29 6.0
6IF41_WHEAT (Q03387) Eukaryotic initiation factor iso-4F subunit ... 29 6.0
7LEG12_MOUSE (Q91VD1) Galectin-12 29 6.0
8LUZP1_HUMAN (Q86V48) Leucine zipper protein 1 28 7.9

>MTAL1_KLULA (Q08398) Mating-type protein ALPHA1 (Transcription activator|
           Alpha1p) (MATalpha1 protein)
          Length = 261

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 229 LQTIINTHVTSQKYTAQNWLLLTSQFLCGETPK 327
           L TII+ H T  K T +NW L+  ++ C  + K
Sbjct: 129 LSTIISKHWTVDKQTRKNWELIAQEYNCDASGK 161



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>SCW11_YEAST (P53189) Probable family 17 glucosidase SCW11 precursor (EC|
           3.2.1.-) (Soluble cell wall protein 11)
          Length = 542

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 21/66 (31%), Positives = 33/66 (50%)
 Frame = +3

Query: 93  NNNIGGDTKTSHLTEEEKKKPCSFPGSSKS*AAVAERPKSMASSFPPNNNQHSCNLAKIY 272
           +++    T +S  + +E     S  GSS S AA+   PK++A  + P N+  SC  A   
Sbjct: 245 SSSTSSSTSSSTSSTQETAATTS-EGSSSSSAAITSSPKAIA--YSPYNDDGSCKSADAV 301

Query: 273 SSKLAV 290
           SS L +
Sbjct: 302 SSDLTL 307



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>PCYOX_PONPY (Q5R748) Prenylcysteine oxidase precursor (EC 1.8.3.5)|
          Length = 505

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = -1

Query: 291 QQPVLSCIFLRGYMSVDYCLEERKKPWILVSRRRRPNSCWSLGMNKAFFFL 139
           Q+ +     L+ ++S DY +   KKPW+     + P  C S+ ++   ++L
Sbjct: 410 QETLTKAQILKLFLSYDYAV---KKPWLAYPHYKPPEKCPSIILHDRLYYL 457



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>PCYOX_MACFA (Q95KC9) Prenylcysteine oxidase precursor (EC 1.8.3.5)|
          Length = 505

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = -1

Query: 291 QQPVLSCIFLRGYMSVDYCLEERKKPWILVSRRRRPNSCWSLGMNKAFFFL 139
           Q+ +     L+ ++S DY +   KKPW+     + P  C S+ ++   ++L
Sbjct: 410 QETLTKAQILKLFLSYDYAV---KKPWLAYPHYKPPEKCPSIILHDRLYYL 457



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>PCYOX_HUMAN (Q9UHG3) Prenylcysteine oxidase precursor (EC 1.8.3.5) (PCL1)|
          Length = 505

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = -1

Query: 291 QQPVLSCIFLRGYMSVDYCLEERKKPWILVSRRRRPNSCWSLGMNKAFFFL 139
           Q+ +     L+ ++S DY +   KKPW+     + P  C S+ ++   ++L
Sbjct: 410 QETLTKAQILKLFLSYDYAV---KKPWLAYPHYKPPEKCPSIILHDRLYYL 457



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>IF41_WHEAT (Q03387) Eukaryotic initiation factor iso-4F subunit p82-34|
           (eIF-(iso)4F p82-34)
          Length = 788

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 13/15 (86%), Positives = 14/15 (93%)
 Frame = -2

Query: 446 SSHAAVVEACNSLLI 402
           SSHAAVV+ACNSL I
Sbjct: 774 SSHAAVVDACNSLSI 788



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>LEG12_MOUSE (Q91VD1) Galectin-12|
          Length = 314

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 6/57 (10%)
 Frame = +2

Query: 260 RKNIQLKTGCCSHPSSSAVKHLSYREYTIRCLSLDTA------PEKLSWPRAVISRG 412
           R  +  + GCC HP        S R YT++   +          +++ WP   + RG
Sbjct: 53  RFQVDFQCGCCLHPQPDVAFRFSPRFYTVKPHVICNTHQGGLWQKEIRWPGVALQRG 109



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>LUZP1_HUMAN (Q86V48) Leucine zipper protein 1|
          Length = 1076

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
 Frame = +3

Query: 117 KTSHL-------TEEEKKKPCSF-PGSSKS*AAVAERPKSMASSFPPNNNQHS 251
           K SH+       T+E KK    F PGSS+S    +    S+ S +PP   +HS
Sbjct: 433 KASHMGVSTDSGTQETKKTEDRFVPGSSQSEGKKSREQPSVLSRYPPAAQEHS 485


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,910,441
Number of Sequences: 219361
Number of extensions: 1364343
Number of successful extensions: 3709
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3709
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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