>PRP8_MOUSE (Q99PV0) Pre-mRNA-processing-splicing factor 8 (Splicing factor Prp8)|
          Length = 2335

 Score =  111 bits (277), Expect = 9e-25
 Identities = 46/73 (63%), Positives = 59/73 (80%)
 Frame = -1

Query: 437  LSDRFLGFYMVPDNAPWNYNFMGVKHDPLMKYSMKLGTPRDFYHEDHRPTHFLEFSNIEE 258
            LSDRFLGF+MVP  + WNYNFMGV+HDP MKY ++L  P++FYHE HRP+HFL F+ ++E
Sbjct: 2263 LSDRFLGFFMVPAQSSWNYNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQE 2322

Query: 257  GEVAEGDREDTFS 219
            GEV   DRED ++
Sbjct: 2323 GEVYSADREDLYA 2335

>PRP8_HUMAN (Q6P2Q9) Pre-mRNA-processing-splicing factor 8 (Splicing factor Prp8)|
            (PRP8 homolog) (220 kDa U5 snRNP-specific protein) (p220)
          Length = 2335

 Score =  111 bits (277), Expect = 9e-25
 Identities = 46/73 (63%), Positives = 59/73 (80%)
 Frame = -1

Query: 437  LSDRFLGFYMVPDNAPWNYNFMGVKHDPLMKYSMKLGTPRDFYHEDHRPTHFLEFSNIEE 258
            LSDRFLGF+MVP  + WNYNFMGV+HDP MKY ++L  P++FYHE HRP+HFL F+ ++E
Sbjct: 2263 LSDRFLGFFMVPAQSSWNYNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQE 2322

Query: 257  GEVAEGDREDTFS 219
            GEV   DRED ++
Sbjct: 2323 GEVYSADREDLYA 2335

>PRP8_CAEEL (P34369) Pre-mRNA-splicing factor 8 homolog|
          Length = 2329

 Score = 87.0 bits (214), Expect = 2e-17
 Identities = 37/74 (50%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
 Frame = -1

Query: 437  LSDRFLGFYMVPDNAPWNYNFMGVKHDPLMKYSMKLGTPRDFYHEDHRPTHFLEFSNIEE 258
            LSDRFLG++MVP N  WNYNF G +  P MK+ + L  P+++YHEDHRP HF  F   ++
Sbjct: 2256 LSDRFLGYFMVPSNGVWNYNFQGQRWSPAMKFDVCLSNPKEYYHEDHRPVHFHNFKAFDD 2315

Query: 257  G-EVAEGDREDTFS 219
                   DRED F+
Sbjct: 2316 PLGTGSADREDAFA 2329

>PRP8_YEAST (P33334) Pre-mRNA-splicing factor 8|
          Length = 2413

 Score = 71.6 bits (174), Expect = 8e-13
 Identities = 32/73 (43%), Positives = 43/73 (58%)
 Frame = -1

Query: 437  LSDRFLGFYMVPDNAPWNYNFMGVKHDPLMKYSMKLGTPRDFYHEDHRPTHFLEFSNIEE 258
            LSDR  G +++P    WNY FMG   +    Y+ K G P +FY+E HRP HFL+FS +  
Sbjct: 2341 LSDRITGNFIIPSGNVWNYTFMGTAFNQEGDYNFKYGIPLEFYNEMHRPVHFLQFSELAG 2400

Query: 257  GEVAEGDREDTFS 219
             E  E ++ D FS
Sbjct: 2401 DEELEAEQIDVFS 2413

>EX7L_CHLTR (O84333) Probable exodeoxyribonuclease VII large subunit (EC|
           3.1.11.6) (Exonuclease VII large subunit)
          Length = 516

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 13/46 (28%), Positives = 28/46 (60%)
 Frame = +1

Query: 25  LYSTVLEGQAYNTRY*SQETENIIQHVTSKLHTSQSSLFKTEQSSL 162
           LY++ L+ +  N ++ +Q + NI+  ++ +LH + +S  +T Q  L
Sbjct: 381 LYTSCLKNELLNLQHHTQHSRNILSQLSRRLHIAIASSQQTHQECL 426

>NEU4_CATCO (P16229) Vasotocin-neurophysin VT 2 precursor [Contains: Vasotocin|
           (VT); Neurophysin VT 2]
          Length = 155

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
 Frame = +2

Query: 290 LACGPRGRSRGVCPASCCTSSAG---RA*LP*SCSSTERCPEPCRIQG 424
           LACGP  + R + P+ CC    G    +     C   E  P PC+  G
Sbjct: 43  LACGPGDKGRCLGPSICCGEEIGCLVGSPWMARCQEEEYLPSPCQTAG 90

>ATX2L_MOUSE (Q7TQH0) Ataxin-2-like protein|
          Length = 1049

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 18/68 (26%)
 Frame = -3

Query: 438  SQRPLPWILHGSGQRSVE---LQLHGSQARPA---------------DEVQHEAGHTPRL 313
            +++P P  L+ +  +S      QLHG Q +PA                 VQH+AG  P L
Sbjct: 849  AEQPTPQALYATVHQSYPHHATQLHGHQPQPATTPTGSQPQSQHAAPSPVQHQAGQAPHL 908

Query: 312  LPRGPQAN 289
                PQ N
Sbjct: 909  GSGQPQQN 916

>KRA53_HUMAN (Q6L8H2) Keratin-associated protein 5-3 (Keratin-associated protein|
           5.3) (Ultrahigh sulfur keratin-associated protein 5.3)
           (Keratin-associated protein 5-9) (Keratin-associated
           protein 5.9) (UHS KerB-like)
          Length = 238

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 15/64 (23%)
 Frame = +2

Query: 281 GSVLACGPRGRSRGVCPA-----------SCCTSSAGRA*LP*SC----SSTERCPEPCR 415
           GS   CG RG S+G C +            CC+S  G +    SC     S   C +PC 
Sbjct: 106 GSKGVCGFRGGSKGGCGSCGCSQCSCYKPCCCSSGCGSSCCQSSCCKPSCSQSSCCKPCC 165

Query: 416 IQGS 427
            Q S
Sbjct: 166 SQSS 169

>LUC7L_MOUSE (Q9CYI4) Putative RNA-binding protein Luc7-like 1|
          Length = 371

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +2

Query: 71  SLKRRKTSYNMSRQSYTRHRALYSKLSRAHCR 166
           S +RRK S + SR  Y RHR+     SR H R
Sbjct: 284 SRERRKFSRSRSRDRYRRHRSRSRSHSRGHRR 315


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,686,591
Number of Sequences: 219361
Number of extensions: 887698
Number of successful extensions: 2588
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2582
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)