ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl29f03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 115 1e-22
2dbj|AK058717.1| Oryza sativa (japonica cultivar-group) cDNA clon... 115 1e-22
3gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 115 1e-22
4emb|AL845344.4|CNS08CB6 Oryza sativa chromosome 12, . BAC OSJNBb... 115 1e-22
5gb|DQ119301.1| Oryza sativa (indica cultivar-group) putative ubi... 100 7e-18
6gb|AY104559.1| Zea mays PCO133879 mRNA sequence 76 1e-10
7gb|DQ083192.1| Oryza sativa (indica cultivar-group) clone 5S5H65... 68 2e-08
8gb|BT016292.1| Zea mays clone Contig125 mRNA sequence 62 1e-06
9dbj|AK067123.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 4e-04
10dbj|AK059481.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 4e-04
11dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.023
12dbj|AP005651.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.023
13dbj|AP005612.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.023
14emb|AL138849.12| Human DNA sequence from clone RP5-965L7 on chro... 44 0.35
15emb|AL139016.8| Human DNA sequence from clone RP4-658C17 on chro... 44 0.35
16gb|AC011291.8| Homo sapiens BAC clone RP11-67G7 from 2, complete... 44 0.35
17emb|AL626783.16| Mouse DNA sequence from clone RP23-406B13 on ch... 44 0.35
18ref|NM_001016052.2| Xenopus tropicalis myosin X (myo10), mRNA 42 1.4
19gb|AC123835.4| Mus musculus BAC clone RP23-365J20 from chromosom... 42 1.4
20emb|CR762338.2| Xenopus tropicalis finished cDNA, clone TGas074f22 42 1.4
21dbj|AP001803.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 42 1.4
22gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete... 40 5.5
23ref|XM_513410.1| PREDICTED: Pan troglodytes similar to The KIAA0... 40 5.5
24ref|NM_015269.1| Homo sapiens zinc finger, CCHC domain containin... 40 5.5
25ref|NM_001009881.1| Homo sapiens zinc finger, CCHC domain contai... 40 5.5
26ref|NM_001009882.1| Homo sapiens zinc finger, CCHC domain contai... 40 5.5
27gb|BC035820.1| Homo sapiens zinc finger, CCHC domain containing ... 40 5.5
28gb|AC154583.3| Mus musculus BAC clone RP23-248H18 from chromosom... 40 5.5
29ref|XM_532573.2| PREDICTED: Canis familiaris similar to zinc fin... 40 5.5
30ref|XM_853983.1| PREDICTED: Canis familiaris similar to zinc fin... 40 5.5
31gb|AC126444.3| Mus musculus BAC clone RP24-136A8 from chromosome... 40 5.5
32gb|AC121601.4| Mus musculus BAC clone RP23-305F2 from 1, complet... 40 5.5
33ref|NM_005019.3| Homo sapiens phosphodiesterase 1A, calmodulin-d... 40 5.5
34emb|AL606828.4| Human DNA sequence from clone RP11-20J6 on chrom... 40 5.5
35gb|U61850.2|GGU61850 Gallus gallus m2 muscarinic acetylcholine r... 40 5.5
36gb|BC022480.1| Homo sapiens phosphodiesterase 1A, calmodulin-dep... 40 5.5
37emb|CR860282.1| Pongo pygmaeus mRNA; cDNA DKFZp459G145 (from clo... 40 5.5
38dbj|AK220327.1| Mus musculus mRNA for mKIAA0191 protein 40 5.5
39gb|AC010061.6| Drosophila melanogaster 3L BAC RP98-11F16 (Roswel... 40 5.5
40dbj|AK095733.1| Homo sapiens cDNA FLJ38414 fis, clone FEBRA2009514 40 5.5
41ref|NM_175472.3| Mus musculus zinc finger, CCHC domain containin... 40 5.5
42dbj|AK049279.1| Mus musculus ES cells cDNA, RIKEN full-length en... 40 5.5
43dbj|AK031299.1| Mus musculus 13 days embryo male testis cDNA, RI... 40 5.5
44dbj|AK041821.1| Mus musculus 3 days neonate thymus cDNA, RIKEN f... 40 5.5
45gb|AC158181.2| Selaginella moellendorffii clone JGIASXY-5D1, com... 40 5.5
46emb|BX648783.1|HSM808934 Homo sapiens mRNA; cDNA DKFZp686I05143 ... 40 5.5
47gb|AF155197.1|AF155197 Acetivibrio cellulolyticus cellulosomal s... 40 5.5
48gb|AE003531.3| Drosophila melanogaster chromosome 3L, section 54... 40 5.5
49gb|AC160024.2| Pan troglodytes BAC clone CH251-374N3 from chromo... 40 5.5
50emb|CT571278.3| Mouse DNA sequence from clone RP24-372E22 on chr... 40 5.5
51dbj|D83776.1| Human mRNA for KIAA0191 gene, partial cds 40 5.5 
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  115 bits (58), Expect = 1e-22
 Identities = 64/66 (96%)
 Strand = Plus / Minus

                                                                            
Query: 1        acatgcccctaccaaaatatttttcttatgtaccagctttgctctacacaaacaaagcaa 60
                |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 18389947 acatgcccctaccaaaatctttttcttatgtaccagctttgctctacacaaataaagcaa 18389888

                      
Query: 61       catcta 66
                ||||||
Sbjct: 18389887 catcta 18389882



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                                
Query: 337      ttctcaattgtagatcttcacaggcttctcatatgtgtgtcgattctg 384
                ||||||||| || || ||||||||||||||| | ||||| ||||||||
Sbjct: 18389606 ttctcaattataaattttcacaggcttctcaaaagtgtgacgattctg 18389559
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>dbj|AK058717.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-E02, full
           insert sequence
          Length = 650

 Score =  115 bits (58), Expect = 1e-22
 Identities = 64/66 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   acatgcccctaccaaaatatttttcttatgtaccagctttgctctacacaaacaaagcaa 60
           |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 476 acatgcccctaccaaaatctttttcttatgtaccagctttgctctacacaaataaagcaa 417

                 
Query: 61  catcta 66
           ||||||
Sbjct: 416 catcta 411



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                       
Query: 337 ttctcaattgtagatcttcacaggcttctcatatgtgtgtcgattctgattagctgtgta 396
           ||||||||| || || ||||||||||||||| | ||||| ||||||||||| ||||| ||
Sbjct: 135 ttctcaattataaattttcacaggcttctcaaaagtgtgacgattctgattggctgtata 76

                         
Query: 397 tgaccttttgggtg 410
            |||||||| ||||
Sbjct: 75  agacctttttggtg 62
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  115 bits (58), Expect = 1e-22
 Identities = 64/66 (96%)
 Strand = Plus / Minus

                                                                            
Query: 1        acatgcccctaccaaaatatttttcttatgtaccagctttgctctacacaaacaaagcaa 60
                |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 18316173 acatgcccctaccaaaatctttttcttatgtaccagctttgctctacacaaataaagcaa 18316114

                      
Query: 61       catcta 66
                ||||||
Sbjct: 18316113 catcta 18316108



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                                
Query: 337      ttctcaattgtagatcttcacaggcttctcatatgtgtgtcgattctg 384
                ||||||||| || || ||||||||||||||| | ||||| ||||||||
Sbjct: 18315832 ttctcaattataaattttcacaggcttctcaaaagtgtgacgattctg 18315785
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>emb|AL845344.4|CNS08CB6 Oryza sativa chromosome 12, . BAC OSJNBb0108O14 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 138585

 Score =  115 bits (58), Expect = 1e-22
 Identities = 64/66 (96%)
 Strand = Plus / Minus

                                                                         
Query: 1     acatgcccctaccaaaatatttttcttatgtaccagctttgctctacacaaacaaagcaa 60
             |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 41846 acatgcccctaccaaaatctttttcttatgtaccagctttgctctacacaaataaagcaa 41787

                   
Query: 61    catcta 66
             ||||||
Sbjct: 41786 catcta 41781



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                             
Query: 337   ttctcaattgtagatcttcacaggcttctcatatgtgtgtcgattctg 384
             ||||||||| || || ||||||||||||||| | ||||| ||||||||
Sbjct: 41505 ttctcaattataaattttcacaggcttctcaaaagtgtgacgattctg 41458
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>gb|DQ119301.1| Oryza sativa (indica cultivar-group) putative ubiquitin protease
            mRNA, partial cds
          Length = 1593

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 63/66 (95%), Gaps = 1/66 (1%)
 Strand = Plus / Minus

                                                                        
Query: 1    acatgcccctaccaaaatatttttcttatgtaccagctttgctctacacaaacaaagcaa 60
            |||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||
Sbjct: 1396 acatgcccctaccaaaatctttt-cttatgtaccagctttgctctacacaaataaagcaa 1338

                  
Query: 61   catcta 66
            ||||||
Sbjct: 1337 catcta 1332



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 337  ttctcaattgtagatcttcacaggcttctcatatgtgtgtcgattctgattagctgtgta 396
            ||||||||| || || ||||||||||||||| | ||||| ||||||||||| ||||| ||
Sbjct: 1056 ttctcaattataaattttcacaggcttctcaaaagtgtgacgattctgattggctgtata 997

                          
Query: 397  tgaccttttgggtg 410
             |||||||| ||||
Sbjct: 996  agacctttttggtg 983
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>gb|AY104559.1| Zea mays PCO133879 mRNA sequence
          Length = 962

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 62/70 (88%)
 Strand = Plus / Minus

                                                                       
Query: 336 tttctcaattgtagatcttcacaggcttctcatatgtgtgtcgattctgattagctgtgt 395
           |||||||||| || || ||||| ||||||||||| ||||| ||||||||||| |||||||
Sbjct: 459 tttctcaattataaattttcacgggcttctcataggtgtgccgattctgattggctgtgt 400

                     
Query: 396 atgacctttt 405
           | ||||||||
Sbjct: 399 aagacctttt 390
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>gb|DQ083192.1| Oryza sativa (indica cultivar-group) clone 5S5H65 mRNA sequence
          Length = 741

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                       
Query: 337 ttctcaattgtagatcttcacaggcttctcatatgtgtgtcgattctgattagctgtgta 396
           ||||||||| || || ||||||||||||||| | ||||| ||||||||||| ||||| ||
Sbjct: 431 ttctcaattataaattttcacaggcttctcaaaagtgtgacgattctgattggctgtata 372

                         
Query: 397 tgaccttttgggtg 410
            |||||||| ||||
Sbjct: 371 agacctttttggtg 358



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                              
Query: 32  accagctttgctctacacaaacaaagcaacatcta 66
           ||||||||||||||||||||| |||||||||||||
Sbjct: 741 accagctttgctctacacaaataaagcaacatcta 707
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>gb|BT016292.1| Zea mays clone Contig125 mRNA sequence
          Length = 1106

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 61/71 (85%)
 Strand = Plus / Minus

                                                                       
Query: 331 gaaggtttctcaattgtagatcttcacaggcttctcatatgtgtgtcgattctgattagc 390
           ||||||||||||||| || || || || ||||||||||| ||||| ||||||||||| | 
Sbjct: 636 gaaggtttctcaattataaatttttacgggcttctcataggtgtgccgattctgattgga 577

                      
Query: 391 tgtgtatgacc 401
           |||||| ||||
Sbjct: 576 tgtgtaagacc 566



 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                   
Query: 9   ctaccaaaatatttttcttatgtaccagctttgctctaca 48
           ||||||| ||||||||||||||| | ||||||||||||||
Sbjct: 896 ctaccaacatatttttcttatgtgctagctttgctctaca 857
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>dbj|AK067123.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096M22, full
            insert sequence
          Length = 3975

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 60/71 (84%)
 Strand = Plus / Minus

                                                                        
Query: 340  tcaattgtagatcttcacaggcttctcatatgtgtgtcgattctgattagctgtgtatga 399
            ||||||||| ||  |||| ||||||||||| ||||| || |||||||| |||||||| | 
Sbjct: 3348 tcaattgtaaattctcactggcttctcataggtgtgacggttctgattggctgtgtaggc 3289

                       
Query: 400  ccttttgggtg 410
            |||||| ||||
Sbjct: 3288 cctttttggtg 3278
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>dbj|AK059481.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-F05, full
           insert sequence
          Length = 1098

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 60/71 (84%)
 Strand = Plus / Minus

                                                                       
Query: 340 tcaattgtagatcttcacaggcttctcatatgtgtgtcgattctgattagctgtgtatga 399
           ||||||||| ||  |||| ||||||||||| ||||| || |||||||| |||||||| | 
Sbjct: 511 tcaattgtaaattctcactggcttctcataggtgtgacggttctgattggctgtgtaggc 452

                      
Query: 400 ccttttgggtg 410
           |||||| ||||
Sbjct: 451 cctttttggtg 441
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                        
Query: 34       cagctttgctctacacaaacaaag 57
                ||||||||||||||||||||||||
Sbjct: 12789892 cagctttgctctacacaaacaaag 12789915
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>dbj|AP005651.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0086N11
          Length = 146185

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 34     cagctttgctctacacaaacaaag 57
              ||||||||||||||||||||||||
Sbjct: 138169 cagctttgctctacacaaacaaag 138192
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>dbj|AP005612.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OSJNBa0073A18
          Length = 176755

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 34   cagctttgctctacacaaacaaag 57
            ||||||||||||||||||||||||
Sbjct: 9374 cagctttgctctacacaaacaaag 9397
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>emb|AL138849.12| Human DNA sequence from clone RP5-965L7 on chromosome 1p32.1-33
             Contains the 3' ends of genes FLJ34719 and KIAA0191,
             complete sequence
          Length = 127006

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 10    taccaaaatatttttcttatgt 31
             ||||||||||||||||||||||
Sbjct: 94767 taccaaaatatttttcttatgt 94788
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>emb|AL139016.8| Human DNA sequence from clone RP4-658C17 on chromosome 1p11.1-13.3,
             complete sequence
          Length = 100643

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 15    aaatatttttcttatgtaccag 36
             ||||||||||||||||||||||
Sbjct: 26796 aaatatttttcttatgtaccag 26817
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>gb|AC011291.8| Homo sapiens BAC clone RP11-67G7 from 2, complete sequence
          Length = 150214

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 88    tcaggacaatgaaatcagcatg 109
             ||||||||||||||||||||||
Sbjct: 27674 tcaggacaatgaaatcagcatg 27653
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>emb|AL626783.16| Mouse DNA sequence from clone RP23-406B13 on chromosome 4, complete
            sequence
          Length = 179370

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 10   taccaaaatatttttcttatgt 31
            ||||||||||||||||||||||
Sbjct: 9681 taccaaaatatttttcttatgt 9660
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>ref|NM_001016052.2| Xenopus tropicalis myosin X (myo10), mRNA
          Length = 1383

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 126 ggagcaggcaagacggaaagc 146
           |||||||||||||||||||||
Sbjct: 878 ggagcaggcaagacggaaagc 898
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>gb|AC123835.4| Mus musculus BAC clone RP23-365J20 from chromosome 9, complete sequence
          Length = 219799

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 77     gtctatcacactcaggacaat 97
              |||||||||||||||||||||
Sbjct: 146895 gtctatcacactcaggacaat 146875
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>emb|CR762338.2| Xenopus tropicalis finished cDNA, clone TGas074f22
          Length = 1383

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 126 ggagcaggcaagacggaaagc 146
           |||||||||||||||||||||
Sbjct: 878 ggagcaggcaagacggaaagc 898
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>dbj|AP001803.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-100N3, complete
             sequences
          Length = 159372

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 219   cacaaatgaccatatatttga 239
             |||||||||||||||||||||
Sbjct: 82776 cacaaatgaccatatatttga 82796
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>gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete genome
          Length = 2201561

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 45      tacacaaacaaagcaacatctata 68
               |||||||||||||||||| |||||
Sbjct: 1438573 tacacaaacaaagcaacaactata 1438596
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>ref|XM_513410.1| PREDICTED: Pan troglodytes similar to The KIAA0191 gene is
           expressed ubiquitously.~The KIAA0191 protein retains the
           C2H2 zinc-finger at its N-terminal region. (LOC456859),
           mRNA
          Length = 5007

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 12  ccaaaatatttttcttatgt 31
           ||||||||||||||||||||
Sbjct: 985 ccaaaatatttttcttatgt 966
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>ref|NM_015269.1| Homo sapiens zinc finger, CCHC domain containing 11 (ZCCHC11),
            transcript variant 2, mRNA
          Length = 5842

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 12   ccaaaatatttttcttatgt 31
            ||||||||||||||||||||
Sbjct: 1234 ccaaaatatttttcttatgt 1215
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>ref|NM_001009881.1| Homo sapiens zinc finger, CCHC domain containing 11 (ZCCHC11),
            transcript variant 1, mRNA
          Length = 5845

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 12   ccaaaatatttttcttatgt 31
            ||||||||||||||||||||
Sbjct: 1234 ccaaaatatttttcttatgt 1215
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>ref|NM_001009882.1| Homo sapiens zinc finger, CCHC domain containing 11 (ZCCHC11),
            transcript variant 3, mRNA
          Length = 5830

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 12   ccaaaatatttttcttatgt 31
            ||||||||||||||||||||
Sbjct: 1234 ccaaaatatttttcttatgt 1215
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>gb|BC035820.1| Homo sapiens zinc finger, CCHC domain containing 11, mRNA (cDNA clone
            IMAGE:5553553), partial cds
          Length = 2426

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 12   ccaaaatatttttcttatgt 31
            ||||||||||||||||||||
Sbjct: 1245 ccaaaatatttttcttatgt 1226
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>gb|AC154583.3| Mus musculus BAC clone RP23-248H18 from chromosome 13, complete sequence
          Length = 191052

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 365    tcatatgtgtgtcgattctg 384
              ||||||||||||||||||||
Sbjct: 154048 tcatatgtgtgtcgattctg 154067
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>ref|XM_532573.2| PREDICTED: Canis familiaris similar to zinc finger, CCHC domain
            containing 11 isoform b, transcript variant 1
            (LOC475349), mRNA
          Length = 5811

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 12   ccaaaatatttttcttatgt 31
            ||||||||||||||||||||
Sbjct: 1230 ccaaaatatttttcttatgt 1211
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>ref|XM_853983.1| PREDICTED: Canis familiaris similar to zinc finger, CCHC domain
           containing 11 isoform b, transcript variant 2
           (LOC475349), mRNA
          Length = 5206

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 12  ccaaaatatttttcttatgt 31
           ||||||||||||||||||||
Sbjct: 613 ccaaaatatttttcttatgt 594
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>gb|AC126444.3| Mus musculus BAC clone RP24-136A8 from chromosome 14, complete sequence
          Length = 141017

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 113   gcttcgttgtcagggagcaggcaa 136
             |||||||||||||| |||||||||
Sbjct: 56244 gcttcgttgtcaggtagcaggcaa 56221
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>gb|AC121601.4| Mus musculus BAC clone RP23-305F2 from 1, complete sequence
          Length = 190653

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 2      catgcccctaccaaaatatt 21
              ||||||||||||||||||||
Sbjct: 156431 catgcccctaccaaaatatt 156412
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>ref|NM_005019.3| Homo sapiens phosphodiesterase 1A, calmodulin-dependent (PDE1A),
            transcript variant 1, mRNA
          Length = 2414

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 90   aggacaatgaaatcagcatg 109
            ||||||||||||||||||||
Sbjct: 1830 aggacaatgaaatcagcatg 1849
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>emb|AL606828.4| Human DNA sequence from clone RP11-20J6 on chromosome 6, complete
             sequence
          Length = 33887

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 391   tgtgtatgaccttttgggtg 410
             ||||||||||||||||||||
Sbjct: 19147 tgtgtatgaccttttgggtg 19128
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>gb|U61850.2|GGU61850 Gallus gallus m2 muscarinic acetylcholine receptor gene, promoter
           region and exon 1
          Length = 3175

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 208 agaccttggcacacaaatga 227
           ||||||||||||||||||||
Sbjct: 856 agaccttggcacacaaatga 837
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>gb|BC022480.1| Homo sapiens phosphodiesterase 1A, calmodulin-dependent, transcript
            variant 1, mRNA (cDNA clone MGC:26303 IMAGE:4814064),
            complete cds
          Length = 2322

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 90   aggacaatgaaatcagcatg 109
            ||||||||||||||||||||
Sbjct: 1881 aggacaatgaaatcagcatg 1900
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>emb|CR860282.1| Pongo pygmaeus mRNA; cDNA DKFZp459G145 (from clone DKFZp459G145)
          Length = 4003

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 12   ccaaaatatttttcttatgt 31
            ||||||||||||||||||||
Sbjct: 1245 ccaaaatatttttcttatgt 1226
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>dbj|AK220327.1| Mus musculus mRNA for mKIAA0191 protein
          Length = 4710

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 12  ccaaaatatttttcttatgt 31
           ||||||||||||||||||||
Sbjct: 797 ccaaaatatttttcttatgt 778
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>gb|AC010061.6| Drosophila melanogaster 3L BAC RP98-11F16 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 165318

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 391   tgtgtatgaccttttgggtg 410
             ||||||||||||||||||||
Sbjct: 79502 tgtgtatgaccttttgggtg 79483
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>dbj|AK095733.1| Homo sapiens cDNA FLJ38414 fis, clone FEBRA2009514
          Length = 2245

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 12   ccaaaatatttttcttatgt 31
            ||||||||||||||||||||
Sbjct: 1263 ccaaaatatttttcttatgt 1244
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>ref|NM_175472.3| Mus musculus zinc finger, CCHC domain containing 11 (Zcchc11), mRNA
          Length = 6054

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 12   ccaaaatatttttcttatgt 31
            ||||||||||||||||||||
Sbjct: 1549 ccaaaatatttttcttatgt 1530
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>dbj|AK049279.1| Mus musculus ES cells cDNA, RIKEN full-length enriched library,
           clone:C330018P17 product:zinc finger, CCHC domain
           containing 11, full insert sequence
          Length = 1789

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 12  ccaaaatatttttcttatgt 31
           ||||||||||||||||||||
Sbjct: 538 ccaaaatatttttcttatgt 519
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>dbj|AK031299.1| Mus musculus 13 days embryo male testis cDNA, RIKEN full-length
           enriched library, clone:6030404K05 product:hypothetical
           Zn-finger, CCHC type/PAP/25A-associated domain/PAP/25A
           core domain/Zinc finger CCHC-type profile/Zn-finger,
           C2H2 type containing protein, full insert sequence
          Length = 3282

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 12  ccaaaatatttttcttatgt 31
           ||||||||||||||||||||
Sbjct: 942 ccaaaatatttttcttatgt 923
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>dbj|AK041821.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A630040F24 product:zinc finger, CCHC
            domain containing 11, full insert sequence
          Length = 1643

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 12   ccaaaatatttttcttatgt 31
            ||||||||||||||||||||
Sbjct: 1555 ccaaaatatttttcttatgt 1536
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>gb|AC158181.2| Selaginella moellendorffii clone JGIASXY-5D1, complete sequence
          Length = 34893

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 344  ttgtagatcttcacaggctt 363
            ||||||||||||||||||||
Sbjct: 4143 ttgtagatcttcacaggctt 4124
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>emb|BX648783.1|HSM808934 Homo sapiens mRNA; cDNA DKFZp686I05143 (from clone DKFZp686I05143)
          Length = 4319

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 12  ccaaaatatttttcttatgt 31
           ||||||||||||||||||||
Sbjct: 650 ccaaaatatttttcttatgt 631
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>gb|AF155197.1|AF155197 Acetivibrio cellulolyticus cellulosomal scaffoldin precursor (cipV)
           gene, complete cds
          Length = 6555

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 9   ctaccaaaatatttttctta 28
           ||||||||||||||||||||
Sbjct: 568 ctaccaaaatatttttctta 587
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>gb|AE003531.3| Drosophila melanogaster chromosome 3L, section 54 of 83 of the complete
              sequence
          Length = 271869

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 391    tgtgtatgaccttttgggtg 410
              ||||||||||||||||||||
Sbjct: 187953 tgtgtatgaccttttgggtg 187934
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>gb|AC160024.2| Pan troglodytes BAC clone CH251-374N3 from chromosome unknown, complete
              sequence
          Length = 163279

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 272    tctttagcacactttctcag 291
              ||||||||||||||||||||
Sbjct: 159569 tctttagcacactttctcag 159588
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>emb|CT571278.3| Mouse DNA sequence from clone RP24-372E22 on chromosome 13, complete
             sequence
          Length = 47954

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 365   tcatatgtgtgtcgattctg 384
             ||||||||||||||||||||
Sbjct: 23300 tcatatgtgtgtcgattctg 23281
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>dbj|D83776.1| Human mRNA for KIAA0191 gene, partial cds
          Length = 5203

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 12  ccaaaatatttttcttatgt 31
           ||||||||||||||||||||
Sbjct: 618 ccaaaatatttttcttatgt 599


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,439,246
Number of Sequences: 3902068
Number of extensions: 4439246
Number of successful extensions: 87654
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87506
Number of HSP's gapped (non-prelim): 147
length of query: 410
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 388
effective length of database: 17,147,199,772
effective search space: 6653113511536
effective search space used: 6653113511536
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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