ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl29f02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_187597.1| Oryza sativa (japonica cultivar-group), predic... 147 4e-32
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 147 4e-32
3gb|AC107226.2| Oryza sativa (japonica cultivar-group) chromosome... 147 4e-32
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 147 4e-32
5dbj|AK100541.1| Oryza sativa (japonica cultivar-group) cDNA clon... 147 4e-32
6gb|BT018868.1| Zea mays clone EL01N0561F04.d mRNA sequence 139 9e-30
7dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 74 4e-10
8dbj|AP003984.3| Oryza sativa (japonica cultivar-group) genomic D... 74 4e-10
9dbj|AK100050.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 4e-10
10dbj|AK066691.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 4e-10
11dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
12dbj|AP005577.3| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
13dbj|AK105382.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 3e-08
14gb|BT024016.1| Zea mays clone EL01N0369F04 mRNA sequence 62 2e-06
15gb|AY110270.1| Zea mays CL3731_1 mRNA sequence 62 2e-06
16gb|BT009244.1| Triticum aestivum clone wlk1.pk0017.e10:fis, full... 58 3e-05
17emb|AJ234657.1|HVU234657 Hordeum vulgare genomic DNA fragment; c... 58 3e-05
18gb|AY109478.1| Zea mays CL14216_1 mRNA sequence 58 3e-05
19ref|NM_127426.2| Arabidopsis thaliana ATTPS11; transferase, tran... 44 0.38
20gb|AC005724.3| Arabidopsis thaliana chromosome 2 clone MSF3 map ... 44 0.38
21gb|AY081537.1| Arabidopsis thaliana unknown protein mRNA, comple... 44 0.38
22gb|AY042865.1| Arabidopsis thaliana Unknown protein (At2g18700) ... 44 0.38
23ref|XM_468260.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.5
24ref|XM_992631.1| PREDICTED: Mus musculus dynein, axonemal, heavy... 42 1.5
25ref|XM_908804.2| PREDICTED: Mus musculus dynein, axonemal, heavy... 42 1.5
26ref|XM_894696.2| PREDICTED: Mus musculus dynein heavy chain doma... 42 1.5
27emb|AL596125.27| Mouse DNA sequence from clone RP23-5O23 on chro... 42 1.5
28gb|DQ369995.1| HIV-1 isolate 02ZAPS015MB1 from South Africa, com... 42 1.5
29gb|AY903244.1| Rattus norvegicus strain BN/Cub dynein axonemal h... 42 1.5
30gb|AY903243.1| Rattus norvegicus strain SHR/OlaIpcv dynein axone... 42 1.5
31gb|AY903242.1| Rattus norvegicus strain WHD dynein axonemal heav... 42 1.5
32ref|XM_220603.3| PREDICTED: Rattus norvegicus dynein-like protei... 42 1.5
33dbj|AP004094.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
34dbj|AP003975.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
35gb|AC146546.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.9
36gb|AC150753.3| Bos taurus BAC CH240-283G19 (Children's Hospital... 40 5.9
37gb|AY322190.1| HIV-1 isolate ML605-3-1997 from Kenya, complete g... 40 5.9
38gb|AY371131.1| HIV-1 isolate 01CM.0074NY from Cameroon gag prote... 40 5.9
39gb|AY371129.1| HIV-1 isolate 02CM.2162SA from Cameroon gag prote... 40 5.9
40gb|AY540630.1| Trypanosoma cruzi NTPDase-1 mRNA, complete cds 40 5.9
41ref|XM_804261.1| Trypanosoma cruzi strain CL Brener nucleoside p... 40 5.9
42ref|XM_800776.1| Trypanosoma cruzi strain CL Brener nucleoside p... 40 5.9
43emb|AL590427.15| Human DNA sequence from clone RP11-396N10 on ch... 40 5.9
44ref|XM_504155.1| Yarrowia lipolytica CLIB122, YALI0E19635g predi... 40 5.9
45gb|AF408626.1| HIV-1 isolate A025 from Argentina, complete genome 40 5.9
46ref|XM_943530.1| PREDICTED: Homo sapiens hypothetical protein LO... 40 5.9
47gb|AY265093.1| HIV-1 isolate 98CM1436 from Cameroon nef protein ... 40 5.9
48gb|AY265064.1| HIV-1 isolate 98CM9835 from Cameroon nef protein ... 40 5.9
49dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
50gb|AY781128.1| HIV-1 isolate 01UYTRA1020 from Uruguay, complete ... 40 5.9
51gb|AF195771.1|AF195771 Streptomyces albus SsgA (ssgA) gene, comp... 40 5.9
52dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 5.9
53dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 5.9
54gb|AY899368.1| HIV-1 isolate 04MHI10-1730 from South Korea nef p... 40 5.9
55gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.9
56emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB ... 40 5.9
57gb|AY037275.1| HIV-1 isolate ARMA036 from Argentina gag protein ... 40 5.9 
>ref|NM_187597.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2583

 Score =  147 bits (74), Expect = 4e-32
 Identities = 80/82 (97%)
 Strand = Plus / Minus

                                                                        
Query: 359  ccctgcatcagcctcaccacctccgccgtgtcgtcgaggtagtacttggccttgctcggc 418
            |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2519 ccctgcatcagcctgacgacctccgccgtgtcgtcgaggtagtacttggccttgctcggc 2460

                                  
Query: 419  ttgcggccgacggtgcaggcga 440
            ||||||||||||||||||||||
Sbjct: 2459 ttgcggccgacggtgcaggcga 2438
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  147 bits (74), Expect = 4e-32
 Identities = 80/82 (97%)
 Strand = Plus / Plus

                                                                           
Query: 359     ccctgcatcagcctcaccacctccgccgtgtcgtcgaggtagtacttggccttgctcggc 418
               |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6487750 ccctgcatcagcctgacgacctccgccgtgtcgtcgaggtagtacttggccttgctcggc 6487809

                                     
Query: 419     ttgcggccgacggtgcaggcga 440
               ||||||||||||||||||||||
Sbjct: 6487810 ttgcggccgacggtgcaggcga 6487831
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>gb|AC107226.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0081P02, complete sequence
          Length = 162425

 Score =  147 bits (74), Expect = 4e-32
 Identities = 80/82 (97%)
 Strand = Plus / Plus

                                                                         
Query: 359   ccctgcatcagcctcaccacctccgccgtgtcgtcgaggtagtacttggccttgctcggc 418
             |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30512 ccctgcatcagcctgacgacctccgccgtgtcgtcgaggtagtacttggccttgctcggc 30571

                                   
Query: 419   ttgcggccgacggtgcaggcga 440
             ||||||||||||||||||||||
Sbjct: 30572 ttgcggccgacggtgcaggcga 30593
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  147 bits (74), Expect = 4e-32
 Identities = 80/82 (97%)
 Strand = Plus / Plus

                                                                           
Query: 359     ccctgcatcagcctcaccacctccgccgtgtcgtcgaggtagtacttggccttgctcggc 418
               |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6486963 ccctgcatcagcctgacgacctccgccgtgtcgtcgaggtagtacttggccttgctcggc 6487022

                                     
Query: 419     ttgcggccgacggtgcaggcga 440
               ||||||||||||||||||||||
Sbjct: 6487023 ttgcggccgacggtgcaggcga 6487044
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>dbj|AK100541.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023102I04, full
            insert sequence
          Length = 2626

 Score =  147 bits (74), Expect = 4e-32
 Identities = 80/82 (97%)
 Strand = Plus / Minus

                                                                        
Query: 359  ccctgcatcagcctcaccacctccgccgtgtcgtcgaggtagtacttggccttgctcggc 418
            |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2211 ccctgcatcagcctgacgacctccgccgtgtcgtcgaggtagtacttggccttgctcggc 2152

                                  
Query: 419  ttgcggccgacggtgcaggcga 440
            ||||||||||||||||||||||
Sbjct: 2151 ttgcggccgacggtgcaggcga 2130
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>gb|BT018868.1| Zea mays clone EL01N0561F04.d mRNA sequence
          Length = 1943

 Score =  139 bits (70), Expect = 9e-30
 Identities = 97/106 (91%)
 Strand = Plus / Minus

                                                                        
Query: 335  agctcctcggagacatacgccagcccctgcatcagcctcaccacctccgccgtgtcgtcg 394
            |||||||||||||| || |  ||||||||||||||||||||||||||||  |||||||||
Sbjct: 1763 agctcctcggagacgtaggagagcccctgcatcagcctcaccacctccgttgtgtcgtcg 1704

                                                          
Query: 395  aggtagtacttggccttgctcggcttgcggccgacggtgcaggcga 440
            ||| |||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 1703 agggagtacttggccttgctgggcttgcggccgacggtgcacgcga 1658
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 52/57 (91%)
 Strand = Plus / Minus

                                                                         
Query: 384      ccgtgtcgtcgaggtagtacttggccttgctcggcttgcggccgacggtgcaggcga 440
                |||||||||||||||||||||||||| ||||||||||   |||||| ||||||||||
Sbjct: 33591259 ccgtgtcgtcgaggtagtacttggccatgctcggcttcttgccgaccgtgcaggcga 33591203



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 377      acctccgccgtgtcgtcgagg 397
                |||||||||||||||||||||
Sbjct: 33865766 acctccgccgtgtcgtcgagg 33865746



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 377      acctccgccgtgtcgtcgagg 397
                |||||||||||||||||||||
Sbjct: 33863105 acctccgccgtgtcgtcgagg 33863085
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>dbj|AP003984.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1046_F07
          Length = 114184

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 52/57 (91%)
 Strand = Plus / Minus

                                                                      
Query: 384   ccgtgtcgtcgaggtagtacttggccttgctcggcttgcggccgacggtgcaggcga 440
             |||||||||||||||||||||||||| ||||||||||   |||||| ||||||||||
Sbjct: 61930 ccgtgtcgtcgaggtagtacttggccatgctcggcttcttgccgaccgtgcaggcga 61874
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>dbj|AK100050.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155M03, full
            insert sequence
          Length = 2490

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 52/57 (91%)
 Strand = Plus / Minus

                                                                     
Query: 384  ccgtgtcgtcgaggtagtacttggccttgctcggcttgcggccgacggtgcaggcga 440
            |||||||||||||||||||||||||| ||||||||||   |||||| ||||||||||
Sbjct: 2124 ccgtgtcgtcgaggtagtacttggccatgctcggcttcttgccgaccgtgcaggcga 2068
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>dbj|AK066691.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074E05, full
           insert sequence
          Length = 1028

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 52/57 (91%)
 Strand = Plus / Minus

                                                                    
Query: 384 ccgtgtcgtcgaggtagtacttggccttgctcggcttgcggccgacggtgcaggcga 440
           |||||||||||||||||||||||||| ||||||||||   |||||| ||||||||||
Sbjct: 628 ccgtgtcgtcgaggtagtacttggccatgctcggcttcttgccgaccgtgcaggcga 572
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 43/46 (93%)
 Strand = Plus / Minus

                                                              
Query: 395      aggtagtacttggccttgctcggcttgcggccgacggtgcaggcga 440
                |||||||||||||||||||| |||||||| || |||||||||||||
Sbjct: 13824130 aggtagtacttggccttgctgggcttgcgaccaacggtgcaggcga 13824085
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>dbj|AP005577.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1655_B12
          Length = 132736

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 43/46 (93%)
 Strand = Plus / Minus

                                                           
Query: 395   aggtagtacttggccttgctcggcttgcggccgacggtgcaggcga 440
             |||||||||||||||||||| |||||||| || |||||||||||||
Sbjct: 73614 aggtagtacttggccttgctgggcttgcgaccaacggtgcaggcga 73569
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>dbj|AK105382.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-B06, full
            insert sequence
          Length = 4111

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 43/46 (93%)
 Strand = Plus / Minus

                                                          
Query: 395  aggtagtacttggccttgctcggcttgcggccgacggtgcaggcga 440
            |||||||||||||||||||| |||||||| || |||||||||||||
Sbjct: 3235 aggtagtacttggccttgctgggcttgcgaccaacggtgcaggcga 3190
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>gb|BT024016.1| Zea mays clone EL01N0369F04 mRNA sequence
          Length = 1822

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                           
Query: 374  accacctccgccgtgtcgtcgaggtagtacttggccttgctcggctt 420
            ||||| ||| |||||||||| ||||||||||||||| ||||||||||
Sbjct: 1471 accacgtccaccgtgtcgtccaggtagtacttggccatgctcggctt 1425
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>gb|AY110270.1| Zea mays CL3731_1 mRNA sequence
          Length = 658

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                          
Query: 374 accacctccgccgtgtcgtcgaggtagtacttggccttgctcggctt 420
           ||||| ||| |||||||||| ||||||||||||||| ||||||||||
Sbjct: 290 accacgtccaccgtgtcgtccaggtagtacttggccatgctcggctt 244
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>gb|BT009244.1| Triticum aestivum clone wlk1.pk0017.e10:fis, full insert mRNA
            sequence
          Length = 2511

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                 
Query: 384  ccgtgtcgtcgaggtagtacttggccttgctcggctt 420
            |||||||||| ||||||||||||||| ||||||||||
Sbjct: 2035 ccgtgtcgtccaggtagtacttggccatgctcggctt 1999
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>emb|AJ234657.1|HVU234657 Hordeum vulgare genomic DNA fragment; clone MWG0934.rev
          Length = 369

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                
Query: 384 ccgtgtcgtcgaggtagtacttggccttgctcggctt 420
           |||||||||| ||||||||||||||| ||||||||||
Sbjct: 18  ccgtgtcgtccaggtagtacttggccatgctcggctt 54
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>gb|AY109478.1| Zea mays CL14216_1 mRNA sequence
          Length = 1151

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                
Query: 388 gtcgtcgaggtagtacttggccttgctcggcttgcggccgacggtgcaggcga 440
           |||||| |||||||||||||||||||| |||||||| || || ||||| ||||
Sbjct: 839 gtcgtccaggtagtacttggccttgctgggcttgcgccccaccgtgcacgcga 891
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>ref|NM_127426.2| Arabidopsis thaliana ATTPS11; transferase, transferring glycosyl
            groups AT2G18700 (ATTPS11) mRNA, complete cds
          Length = 2800

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 392  tcgaggtagtacttggccttgctcgg 417
            ||||| ||||||||||||||||||||
Sbjct: 2456 tcgagatagtacttggccttgctcgg 2431
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>gb|AC005724.3| Arabidopsis thaliana chromosome 2 clone MSF3 map CIC06E08, complete
             sequence
          Length = 88413

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 392   tcgaggtagtacttggccttgctcgg 417
             ||||| ||||||||||||||||||||
Sbjct: 31539 tcgagatagtacttggccttgctcgg 31514
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>gb|AY081537.1| Arabidopsis thaliana unknown protein mRNA, complete cds
          Length = 1047

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 392 tcgaggtagtacttggccttgctcgg 417
           ||||| ||||||||||||||||||||
Sbjct: 764 tcgagatagtacttggccttgctcgg 739
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>gb|AY042865.1| Arabidopsis thaliana Unknown protein (At2g18700) mRNA, complete cds
          Length = 1122

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 392 tcgaggtagtacttggccttgctcgg 417
           ||||| ||||||||||||||||||||
Sbjct: 779 tcgagatagtacttggccttgctcgg 754
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>ref|XM_468260.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1263

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 377 acctccgccgtgtcgtcgagg 397
           |||||||||||||||||||||
Sbjct: 728 acctccgccgtgtcgtcgagg 708
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>ref|XM_992631.1| PREDICTED: Mus musculus dynein, axonemal, heavy chain 2 (Dnahc2),
            mRNA
          Length = 13273

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 51   tagagcaaccactgctgctga 71
            |||||||||||||||||||||
Sbjct: 2291 tagagcaaccactgctgctga 2271
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>ref|XM_908804.2| PREDICTED: Mus musculus dynein, axonemal, heavy chain 2 (Dnahc2),
            mRNA
          Length = 13771

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 51   tagagcaaccactgctgctga 71
            |||||||||||||||||||||
Sbjct: 2774 tagagcaaccactgctgctga 2754
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>ref|XM_894696.2| PREDICTED: Mus musculus dynein heavy chain domain 3, transcript
            variant 2 (Dnhd3), mRNA
          Length = 13704

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 51   tagagcaaccactgctgctga 71
            |||||||||||||||||||||
Sbjct: 2707 tagagcaaccactgctgctga 2687
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>emb|AL596125.27| Mouse DNA sequence from clone RP23-5O23 on chromosome 11 Contains the
              Chd3 gene for chromodomain helicase DNA binding protein 3,
              five novel genes, the 3' end of the gene for a novel
              protein similar to dynein and four CpG islands, complete
              sequence
          Length = 165212

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 51     tagagcaaccactgctgctga 71
              |||||||||||||||||||||
Sbjct: 155319 tagagcaaccactgctgctga 155339
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>gb|DQ369995.1| HIV-1 isolate 02ZAPS015MB1 from South Africa, complete genome
          Length = 9028

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 241  ccttcctcttgtgcttccaac 261
            |||||||||||||||||||||
Sbjct: 8396 ccttcctcttgtgcttccaac 8376
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>gb|AY903244.1| Rattus norvegicus strain BN/Cub dynein axonemal heavy chain-like
            protein mRNA, partial cds
          Length = 11994

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 51   tagagcaaccactgctgctga 71
            |||||||||||||||||||||
Sbjct: 1085 tagagcaaccactgctgctga 1065
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>gb|AY903243.1| Rattus norvegicus strain SHR/OlaIpcv dynein axonemal heavy chain-like
            protein mRNA, partial cds
          Length = 11994

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 51   tagagcaaccactgctgctga 71
            |||||||||||||||||||||
Sbjct: 1085 tagagcaaccactgctgctga 1065
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>gb|AY903242.1| Rattus norvegicus strain WHD dynein axonemal heavy chain-like protein
            mRNA, partial cds
          Length = 11994

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 51   tagagcaaccactgctgctga 71
            |||||||||||||||||||||
Sbjct: 1085 tagagcaaccactgctgctga 1065
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>ref|XM_220603.3| PREDICTED: Rattus norvegicus dynein-like protein 2 (DLP2), mRNA
          Length = 14742

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 51   tagagcaaccactgctgctga 71
            |||||||||||||||||||||
Sbjct: 3512 tagagcaaccactgctgctga 3492
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>dbj|AP004094.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1695_H09
          Length = 114721

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 377   acctccgccgtgtcgtcgagg 397
             |||||||||||||||||||||
Sbjct: 82344 acctccgccgtgtcgtcgagg 82324



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 377   acctccgccgtgtcgtcgagg 397
             |||||||||||||||||||||
Sbjct: 79683 acctccgccgtgtcgtcgagg 79663
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>dbj|AP003975.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1004_E04
          Length = 133621

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 377   acctccgccgtgtcgtcgagg 397
             |||||||||||||||||||||
Sbjct: 24729 acctccgccgtgtcgtcgagg 24709



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 377   acctccgccgtgtcgtcgagg 397
             |||||||||||||||||||||
Sbjct: 22068 acctccgccgtgtcgtcgagg 22048
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>gb|AC146546.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0062M03 map near S6115, complete sequence
          Length = 138223

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 171   aaagcatagctcatgtacac 190
             ||||||||||||||||||||
Sbjct: 64929 aaagcatagctcatgtacac 64948
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>gb|AC150753.3| Bos taurus  BAC CH240-283G19 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 181464

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 35    ggagcccacaacactctaga 54
             ||||||||||||||||||||
Sbjct: 42827 ggagcccacaacactctaga 42846
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>gb|AY322190.1| HIV-1 isolate ML605-3-1997 from Kenya, complete genome
          Length = 9164

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 242  cttcctcttgtgcttccaac 261
            ||||||||||||||||||||
Sbjct: 8511 cttcctcttgtgcttccaac 8492
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>gb|AY371131.1| HIV-1 isolate 01CM.0074NY from Cameroon gag protein (gag) and pol
            protein (pol) genes, partial cds; vif protein (vif), vpr
            protein (vpr), tat protein (tat), rev protein (rev), vpu
            protein (vpu), and envelope glycoprotein (env) genes,
            complete cds; and nef protein (nef) gene, partial cds
          Length = 8405

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 240  cccttcctcttgtgcttcca 259
            ||||||||||||||||||||
Sbjct: 8203 cccttcctcttgtgcttcca 8184
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>gb|AY371129.1| HIV-1 isolate 02CM.2162SA from Cameroon gag protein (gag) and pol
            protein (pol) genes, partial cds; vif protein (vif), vpr
            protein (vpr), tat protein (tat), rev protein (rev), vpu
            protein (vpu), and envelope glycoprotein (env) genes,
            complete cds; and nef protein (nef) gene, partial cds
          Length = 8440

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 242  cttcctcttgtgcttccaac 261
            ||||||||||||||||||||
Sbjct: 8236 cttcctcttgtgcttccaac 8217
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>gb|AY540630.1| Trypanosoma cruzi NTPDase-1 mRNA, complete cds
          Length = 2282

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 357 gcccctgcatcagcctcacc 376
           ||||||||||||||||||||
Sbjct: 160 gcccctgcatcagcctcacc 179
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>ref|XM_804261.1| Trypanosoma cruzi strain CL Brener nucleoside phosphatase
           (Tc00.1047053506229.50) partial mRNA
          Length = 1911

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 357 gcccctgcatcagcctcacc 376
           ||||||||||||||||||||
Sbjct: 38  gcccctgcatcagcctcacc 57
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>ref|XM_800776.1| Trypanosoma cruzi strain CL Brener nucleoside phosphatase
           (Tc00.1047053511571.49) partial mRNA
          Length = 1738

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 357 gcccctgcatcagcctcacc 376
           ||||||||||||||||||||
Sbjct: 50  gcccctgcatcagcctcacc 69
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>emb|AL590427.15| Human DNA sequence from clone RP11-396N10 on chromosome 1 Contains
            the 5' end of the NTNG1 gene for netrin G1 and a CpG
            island, complete sequence
          Length = 160135

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 294  ggtcctcggggtcctctccc 313
            ||||||||||||||||||||
Sbjct: 8729 ggtcctcggggtcctctccc 8748
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>ref|XM_504155.1| Yarrowia lipolytica CLIB122, YALI0E19635g predicted mRNA
          Length = 1140

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 375 ccacctccgccgtgtcgtcg 394
           ||||||||||||||||||||
Sbjct: 548 ccacctccgccgtgtcgtcg 567
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>gb|AF408626.1| HIV-1 isolate A025 from Argentina, complete genome
          Length = 8937

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 240  cccttcctcttgtgcttcca 259
            ||||||||||||||||||||
Sbjct: 8372 cccttcctcttgtgcttcca 8353
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>ref|XM_943530.1| PREDICTED: Homo sapiens hypothetical protein LOC648974 (LOC648974),
           mRNA
          Length = 1149

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 294 ggtcctcggggtcctctccc 313
           ||||||||||||||||||||
Sbjct: 135 ggtcctcggggtcctctccc 116
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>gb|AY265093.1| HIV-1 isolate 98CM1436 from Cameroon nef protein (nef) gene,
           complete cds
          Length = 621

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 242 cttcctcttgtgcttccaac 261
           ||||||||||||||||||||
Sbjct: 190 cttcctcttgtgcttccaac 171
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>gb|AY265064.1| HIV-1 isolate 98CM9835 from Cameroon nef protein (nef) gene,
           complete cds
          Length = 639

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 240 cccttcctcttgtgcttcca 259
           ||||||||||||||||||||
Sbjct: 207 cccttcctcttgtgcttcca 188
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 171      aaagcatagctcatgtacac 190
                ||||||||||||||||||||
Sbjct: 12208253 aaagcatagctcatgtacac 12208272
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>gb|AY781128.1| HIV-1 isolate 01UYTRA1020 from Uruguay, complete genome
          Length = 8801

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 240  cccttcctcttgtgcttcca 259
            ||||||||||||||||||||
Sbjct: 8186 cccttcctcttgtgcttcca 8167
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>gb|AF195771.1|AF195771 Streptomyces albus SsgA (ssgA) gene, complete cds
          Length = 566

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 329 aaggcgagctcctcggagac 348
           ||||||||||||||||||||
Sbjct: 57  aaggcgagctcctcggagac 38
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 272     tgcagctcgccgacgcacca 291
               ||||||||||||||||||||
Sbjct: 1167414 tgcagctcgccgacgcacca 1167395
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 414     tcggcttgcggccgacggtg 433
               ||||||||||||||||||||
Sbjct: 3009490 tcggcttgcggccgacggtg 3009471
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>gb|AY899368.1| HIV-1 isolate 04MHI10-1730 from South Korea nef protein (nef) gene,
           complete cds
          Length = 663

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 242 cttcctcttgtgcttccaac 261
           ||||||||||||||||||||
Sbjct: 190 cttcctcttgtgcttccaac 171
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 171      aaagcatagctcatgtacac 190
                ||||||||||||||||||||
Sbjct: 12287560 aaagcatagctcatgtacac 12287579
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>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica
          Length = 4224103

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 375     ccacctccgccgtgtcgtcg 394
               ||||||||||||||||||||
Sbjct: 2343879 ccacctccgccgtgtcgtcg 2343898
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>gb|AY037275.1| HIV-1 isolate ARMA036 from Argentina gag protein (gag) and pol
            protein (pol) genes, partial cds; vif protein (vif), vpr
            protein (vpr), tat protein (tat), rev protein (rev), vpu
            protein (vpu), envelope glycoprotein (env), and nef
            protein (nef) genes, complete cds; and long terminal
            repeat, complete sequence
          Length = 8675

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 242  cttcctcttgtgcttccaac 261
            ||||||||||||||||||||
Sbjct: 8244 cttcctcttgtgcttccaac 8225


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,172,850
Number of Sequences: 3902068
Number of extensions: 3172850
Number of successful extensions: 67466
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67137
Number of HSP's gapped (non-prelim): 329
length of query: 440
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 418
effective length of database: 17,147,199,772
effective search space: 7167529504696
effective search space used: 7167529504696
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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