ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl29f01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY112812.1| Oryza sativa (indica cultivar-group) J12.2 small ... 90 6e-15
2dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 84 4e-13
3dbj|AP005700.3| Oryza sativa (japonica cultivar-group) genomic D... 84 4e-13
4dbj|AK066121.1| Oryza sativa (japonica cultivar-group) cDNA clon... 84 4e-13
5gb|AY112813.1| Oryza sativa (indica cultivar-group) J12.1 small ... 80 6e-12
6gb|AC116375.11| Mus musculus chromosome 5, clone RP24-197K18, co... 48 0.020
7gb|AC157934.3| Mus musculus chromosome 5, clone RP24-224K15, com... 48 0.020
8gb|AC073372.9| Homo sapiens chromosome 11 clone RP11-500D4, comp... 42 1.2
9dbj|AP002759.3| Homo sapiens genomic DNA, chromosome 11q, clone:... 42 1.2
10emb|CT030167.8| Mouse DNA sequence from clone RP23-333E24 on chr... 42 1.2
11ref|XM_420179.1| PREDICTED: Gallus gallus similar to Nuclear por... 40 4.9
12gb|AC121286.7| Mus musculus chromosome 12, clone RP23-36H21, com... 40 4.9
13gb|AC125130.3| Mus musculus BAC clone RP24-309C7 from chromosome... 40 4.9
14gb|AC125074.3| Mus musculus BAC clone RP23-464N18 from chromosom... 40 4.9
15emb|BX510945.13| Zebrafish DNA sequence from clone CH211-59D17 i... 40 4.9
16emb|AL645784.20| Mouse DNA sequence from clone RP23-11C7 on chro... 40 4.9
17emb|BX294129.10| Zebrafish DNA sequence from clone DKEYP-34H12 i... 40 4.9
18emb|BX629349.6| Zebrafish DNA sequence from clone CH211-53P9 in ... 40 4.9
19gb|AC096509.9| Homo sapiens X BAC RP11-454K24 (Roswell Park Canc... 40 4.9
20emb|BX510352.17| Zebrafish DNA sequence from clone DKEY-96J11 in... 40 4.9
21emb|BX571800.8| Zebrafish DNA sequence from clone DKEY-29B15 in ... 40 4.9
22emb|BX539336.7| Zebrafish DNA sequence from clone CH211-128H21 i... 40 4.9
23gb|AC008102.18| Homo sapiens chromosome 11 clone bac41i21 map 11... 40 4.9
24emb|BX510912.4| Zebrafish DNA sequence from clone CH211-18J22 in... 40 4.9
25gb|AC010276.6|AC010276 Homo sapiens chromosome 5 clone CTC-504A5... 40 4.9
26emb|AL953864.6| Zebrafish DNA sequence from clone DKEY-32E6 in l... 40 4.9
27emb|AL157858.5|CNS01RGA Human chromosome 14 DNA sequence BAC R-1... 40 4.9
28dbj|AP000822.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 4.9
29gb|AC135641.7| Mus musculus BAC clone RP23-376H20 from 12, compl... 40 4.9
30emb|BX000353.8| Zebrafish DNA sequence from clone DKEY-147H15, c... 40 4.9
31emb|CR407545.9| Zebrafish DNA sequence from clone CH211-197E20 i... 40 4.9
32emb|AL136338.4|CNS01DW5 Human chromosome 14 DNA sequence BAC C-2... 40 4.9 
>gb|AY112812.1| Oryza sativa (indica cultivar-group) J12.2 small nucleolar RNA,
           complete sequence
          Length = 158

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 124/149 (83%), Gaps = 6/149 (4%)
 Strand = Plus / Plus

                                                                       
Query: 163 ccatctacatctaaagatgacgagtcactggtgttgttatatgatgcttgtgccgtt--- 219
           ||||| |||||||||||||| || ||| |||||||| || ||||||||||||| | |   
Sbjct: 1   ccatcaacatctaaagatgatgactcattggtgttgctagatgatgcttgtgctgctgtc 60

                                                                       
Query: 220 atgctctggctct---cacttggatttccccagaagtttctgcgtagaccacttgagctc 276
           ||||| |||||||   ||||| |  ||  ||||||||| |||||  |||| |||||||||
Sbjct: 61  atgctttggctctgatcacttagtgtttgccagaagttcctgcgctgaccgcttgagctc 120

                                        
Query: 277 aggctgtttgcagcaaggctgagttctga 305
           ||||||||||||||||||||||| |||||
Sbjct: 121 aggctgtttgcagcaaggctgaggtctga 149
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 178/222 (80%), Gaps = 6/222 (2%)
 Strand = Plus / Minus

                                                                            
Query: 152      gtctcaagctaccatctacatctaaagatgacgagtcactggtgttgttatatgatgctt 211
                |||||| ||||||| | | |||||||||||| || ||| |||||||| |  |||||||||
Sbjct: 10740823 gtctcaggctaccagcaatatctaaagatgatgactcattggtgttgctggatgatgctt 10740764

                                                                            
Query: 212      g---tgccgttatgctctggctc---tcacttggatttccccagaagtttctgcgtagac 265
                |   ||| || ||||| ||||||   |||||| |  ||  ||||||||| |||||  |||
Sbjct: 10740763 gtgctgcagtcatgctttggctctgatcacttagtgtttgccagaagttcctgcgctgac 10740704

                                                                            
Query: 266      cacttgagctcaggctgtttgcagcaaggctgagttctgataggaagggttgcagggggg 325
                | |||||||||||||||||||||||||||||||| ||||| || || ||||| || ||  
Sbjct: 10740703 cgcttgagctcaggctgtttgcagcaaggctgaggtctgacagaaatggttgaagtggta 10740644

                                                          
Query: 326      tatggccttcaagaaggctcacagcgttggacatctttggtc 367
                | || || ||||| ||||||| | | |||| |||||||||||
Sbjct: 10740643 tgtgcccctcaagcaggctcaaaactttggtcatctttggtc 10740602



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 57/67 (85%)
 Strand = Plus / Minus

                                                                            
Query: 173      ctaaagatgacgagtcactggtgttgttatatgatgcttgtgccgttatgctctggctct 232
                ||||||| || || ||| |||||||| | |||||||||||||| || || || |||||||
Sbjct: 10757069 ctaaagacgatgattcattggtgttgctgtatgatgcttgtgctgtcatactttggctct 10757010

                       
Query: 233      cacttgg 239
                |||||||
Sbjct: 10757009 cacttgg 10757003



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 65/78 (83%)
 Strand = Plus / Minus

                                                                            
Query: 290      caaggctgagttctgataggaagggttgcaggggggtatggccttcaagaaggctcacag 349
                |||||||||| ||||| |  || |||||||| || ||||| || ||||| ||||||||  
Sbjct: 10756995 caaggctgaggtctgacaaaaatggttgcagtggtgtatgcccctcaagcaggctcacta 10756936

                                  
Query: 350      cgttggacatctttggtc 367
                | ||||||||||||||||
Sbjct: 10756935 ctttggacatctttggtc 10756918
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>dbj|AP005700.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBb0085I16
          Length = 141701

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 178/222 (80%), Gaps = 6/222 (2%)
 Strand = Plus / Minus

                                                                         
Query: 152   gtctcaagctaccatctacatctaaagatgacgagtcactggtgttgttatatgatgctt 211
             |||||| ||||||| | | |||||||||||| || ||| |||||||| |  |||||||||
Sbjct: 77441 gtctcaggctaccagcaatatctaaagatgatgactcattggtgttgctggatgatgctt 77382

                                                                         
Query: 212   g---tgccgttatgctctggctc---tcacttggatttccccagaagtttctgcgtagac 265
             |   ||| || ||||| ||||||   |||||| |  ||  ||||||||| |||||  |||
Sbjct: 77381 gtgctgcagtcatgctttggctctgatcacttagtgtttgccagaagttcctgcgctgac 77322

                                                                         
Query: 266   cacttgagctcaggctgtttgcagcaaggctgagttctgataggaagggttgcagggggg 325
             | |||||||||||||||||||||||||||||||| ||||| || || ||||| || ||  
Sbjct: 77321 cgcttgagctcaggctgtttgcagcaaggctgaggtctgacagaaatggttgaagtggta 77262

                                                       
Query: 326   tatggccttcaagaaggctcacagcgttggacatctttggtc 367
             | || || ||||| ||||||| | | |||| |||||||||||
Sbjct: 77261 tgtgcccctcaagcaggctcaaaactttggtcatctttggtc 77220



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 57/67 (85%)
 Strand = Plus / Minus

                                                                         
Query: 173   ctaaagatgacgagtcactggtgttgttatatgatgcttgtgccgttatgctctggctct 232
             ||||||| || || ||| |||||||| | |||||||||||||| || || || |||||||
Sbjct: 93687 ctaaagacgatgattcattggtgttgctgtatgatgcttgtgctgtcatactttggctct 93628

                    
Query: 233   cacttgg 239
             |||||||
Sbjct: 93627 cacttgg 93621



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 65/78 (83%)
 Strand = Plus / Minus

                                                                         
Query: 290   caaggctgagttctgataggaagggttgcaggggggtatggccttcaagaaggctcacag 349
             |||||||||| ||||| |  || |||||||| || ||||| || ||||| ||||||||  
Sbjct: 93613 caaggctgaggtctgacaaaaatggttgcagtggtgtatgcccctcaagcaggctcacta 93554

                               
Query: 350   cgttggacatctttggtc 367
             | ||||||||||||||||
Sbjct: 93553 ctttggacatctttggtc 93536
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>dbj|AK066121.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013057L06, full
            insert sequence
          Length = 3370

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 178/222 (80%), Gaps = 6/222 (2%)
 Strand = Plus / Minus

                                                                        
Query: 152  gtctcaagctaccatctacatctaaagatgacgagtcactggtgttgttatatgatgctt 211
            |||||| ||||||| | | |||||||||||| || ||| |||||||| |  |||||||||
Sbjct: 3175 gtctcaggctaccagcaatatctaaagatgatgactcattggtgttgctggatgatgctt 3116

                                                                        
Query: 212  g---tgccgttatgctctggctc---tcacttggatttccccagaagtttctgcgtagac 265
            |   ||| || ||||| ||||||   |||||| |  ||  ||||||||| |||||  |||
Sbjct: 3115 gtgctgcagtcatgctttggctctgatcacttagtgtttgccagaagttcctgcgctgac 3056

                                                                        
Query: 266  cacttgagctcaggctgtttgcagcaaggctgagttctgataggaagggttgcagggggg 325
            | |||||||||||||||||||||||||||||||| ||||| || || ||||| || ||  
Sbjct: 3055 cgcttgagctcaggctgtttgcagcaaggctgaggtctgacagaaatggttgaagtggta 2996

                                                      
Query: 326  tatggccttcaagaaggctcacagcgttggacatctttggtc 367
            | || || ||||| ||||||| | | |||| |||||||||||
Sbjct: 2995 tgtgcccctcaagcaggctcaaaactttggtcatctttggtc 2954
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>gb|AY112813.1| Oryza sativa (indica cultivar-group) J12.1 small nucleolar RNA,
           complete sequence
          Length = 158

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 55/60 (91%)
 Strand = Plus / Plus

                                                                       
Query: 246 ccagaagtttctgcgtagaccacttgagctcaggctgtttgcagcaaggctgagttctga 305
           ||||||||| |||||  |||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 90  ccagaagttcctgcgctgaccgcttgagctcaggctgtttgcagcaaggctgaggtctga 149
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>gb|AC116375.11| Mus musculus chromosome 5, clone RP24-197K18, complete sequence
          Length = 150306

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 14    tacttgcattcttagtagaattaggtgt 41
             ||||||||||||||||||||||| ||||
Sbjct: 43412 tacttgcattcttagtagaattatgtgt 43439
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>gb|AC157934.3| Mus musculus chromosome 5, clone RP24-224K15, complete sequence
          Length = 160733

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                          
Query: 14     tacttgcattcttagtagaattaggtgt 41
              ||||||||||||||||||||||| ||||
Sbjct: 113996 tacttgcattcttagtagaattatgtgt 114023
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>gb|AC073372.9| Homo sapiens chromosome 11 clone RP11-500D4, complete sequence
          Length = 180504

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 1     ctgaagcagagagtacttgca 21
             |||||||||||||||||||||
Sbjct: 35994 ctgaagcagagagtacttgca 35974
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>dbj|AP002759.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-686G23, complete
             sequences
          Length = 177933

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 1     ctgaagcagagagtacttgca 21
             |||||||||||||||||||||
Sbjct: 81300 ctgaagcagagagtacttgca 81320
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>emb|CT030167.8| Mouse DNA sequence from clone RP23-333E24 on chromosome 13, complete
             sequence
          Length = 192930

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 77    gacatagtggcatagccctag 97
             |||||||||||||||||||||
Sbjct: 34458 gacatagtggcatagccctag 34478
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>ref|XM_420179.1| PREDICTED: Gallus gallus similar to Nuclear pore glycoprotein p62 (62
            kDa nucleoporin) (LOC422183), mRNA
          Length = 2294

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 285  tgcagcaaggctgagttctg 304
            ||||||||||||||||||||
Sbjct: 1721 tgcagcaaggctgagttctg 1702
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>gb|AC121286.7| Mus musculus chromosome 12, clone RP23-36H21, complete sequence
          Length = 227648

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 120   ctgaaatacatctaacattt 139
             ||||||||||||||||||||
Sbjct: 11176 ctgaaatacatctaacattt 11195
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>gb|AC125130.3| Mus musculus BAC clone RP24-309C7 from chromosome 14, complete sequence
          Length = 159361

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 230    tctcacttggatttccccag 249
              ||||||||||||||||||||
Sbjct: 159037 tctcacttggatttccccag 159018
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>gb|AC125074.3| Mus musculus BAC clone RP23-464N18 from chromosome 14, complete sequence
          Length = 181200

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 230    tctcacttggatttccccag 249
              ||||||||||||||||||||
Sbjct: 136737 tctcacttggatttccccag 136756
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>emb|BX510945.13| Zebrafish DNA sequence from clone CH211-59D17 in linkage group 21,
             complete sequence
          Length = 202152

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 183   cgagtcactggtgttgttat 202
             ||||||||||||||||||||
Sbjct: 56990 cgagtcactggtgttgttat 57009
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>emb|AL645784.20| Mouse DNA sequence from clone RP23-11C7 on chromosome 11 Contains a
             zinc finger protein pseudogene, a chaperonin subunit 7
             (eta) (Cct7) pseudogene, a novel pseudogene and a CpG
             island, complete sequence
          Length = 217352

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 123   aaatacatctaacatttaag 142
             ||||||||||||||||||||
Sbjct: 58869 aaatacatctaacatttaag 58888
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>emb|BX294129.10| Zebrafish DNA sequence from clone DKEYP-34H12 in linkage group 13,
              complete sequence
          Length = 156627

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 183    cgagtcactggtgttgttat 202
              ||||||||||||||||||||
Sbjct: 143830 cgagtcactggtgttgttat 143849
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>emb|BX629349.6| Zebrafish DNA sequence from clone CH211-53P9 in linkage group 5,
             complete sequence
          Length = 142044

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 183   cgagtcactggtgttgttat 202
             ||||||||||||||||||||
Sbjct: 58540 cgagtcactggtgttgttat 58559
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>gb|AC096509.9| Homo sapiens X BAC RP11-454K24 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 106440

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 22    ttcttagtagaattaggtgttttt 45
             |||||||||||||| |||||||||
Sbjct: 39633 ttcttagtagaattgggtgttttt 39610
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>emb|BX510352.17| Zebrafish DNA sequence from clone DKEY-96J11 in linkage group 18,
              complete sequence
          Length = 152387

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 183    cgagtcactggtgttgttat 202
              ||||||||||||||||||||
Sbjct: 112248 cgagtcactggtgttgttat 112229
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>emb|BX571800.8| Zebrafish DNA sequence from clone DKEY-29B15 in linkage group 5, complete
              sequence
          Length = 195520

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 183    cgagtcactggtgttgttat 202
              ||||||||||||||||||||
Sbjct: 133315 cgagtcactggtgttgttat 133296
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>emb|BX539336.7| Zebrafish DNA sequence from clone CH211-128H21 in linkage group 23,
             complete sequence
          Length = 183357

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 183   cgagtcactggtgttgttat 202
             ||||||||||||||||||||
Sbjct: 52815 cgagtcactggtgttgttat 52834
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>gb|AC008102.18| Homo sapiens chromosome 11 clone bac41i21 map 11q13, complete sequence
          Length = 126787

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 260   gtagaccacttgagctcagg 279
             ||||||||||||||||||||
Sbjct: 71333 gtagaccacttgagctcagg 71352
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>emb|BX510912.4| Zebrafish DNA sequence from clone CH211-18J22 in linkage group 3,
             complete sequence
          Length = 189210

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 183   cgagtcactggtgttgttat 202
             ||||||||||||||||||||
Sbjct: 24327 cgagtcactggtgttgttat 24308
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>gb|AC010276.6|AC010276 Homo sapiens chromosome 5 clone CTC-504A5, complete sequence
          Length = 207842

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 124    aatacatctaacatttaagt 143
              ||||||||||||||||||||
Sbjct: 138768 aatacatctaacatttaagt 138749
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>emb|AL953864.6| Zebrafish DNA sequence from clone DKEY-32E6 in linkage group 23, complete
              sequence
          Length = 249608

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 183    cgagtcactggtgttgttat 202
              ||||||||||||||||||||
Sbjct: 136743 cgagtcactggtgttgttat 136762
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>emb|AL157858.5|CNS01RGA Human chromosome 14 DNA sequence BAC R-187A6 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 188327

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 260    gtagaccacttgagctcagg 279
              ||||||||||||||||||||
Sbjct: 187115 gtagaccacttgagctcagg 187134
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>dbj|AP000822.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-675B4, complete
            sequence
          Length = 94501

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 260  gtagaccacttgagctcagg 279
            ||||||||||||||||||||
Sbjct: 8492 gtagaccacttgagctcagg 8473
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>gb|AC135641.7| Mus musculus BAC clone RP23-376H20 from 12, complete sequence
          Length = 171371

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 120    ctgaaatacatctaacattt 139
              ||||||||||||||||||||
Sbjct: 121251 ctgaaatacatctaacattt 121270
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>emb|BX000353.8| Zebrafish DNA sequence from clone DKEY-147H15, complete sequence
          Length = 189040

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 183    cgagtcactggtgttgttat 202
              ||||||||||||||||||||
Sbjct: 126560 cgagtcactggtgttgttat 126541
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>emb|CR407545.9| Zebrafish DNA sequence from clone CH211-197E20 in linkage group 25,
             complete sequence
          Length = 103187

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 183   cgagtcactggtgttgttat 202
             ||||||||||||||||||||
Sbjct: 48475 cgagtcactggtgttgttat 48456
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>emb|AL136338.4|CNS01DW5 Human chromosome 14 DNA sequence BAC C-2022M23 of library CalTech-D
            from chromosome 14 of Homo sapiens (Human), complete
            sequence
          Length = 143177

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 260  gtagaccacttgagctcagg 279
            ||||||||||||||||||||
Sbjct: 7120 gtagaccacttgagctcagg 7139


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,990,913
Number of Sequences: 3902068
Number of extensions: 2990913
Number of successful extensions: 71554
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71476
Number of HSP's gapped (non-prelim): 75
length of query: 367
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 345
effective length of database: 17,147,199,772
effective search space: 5915783921340
effective search space used: 5915783921340
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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