ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl29e12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC129091.19| Medicago truncatula clone mth2-15j7, complete se... 40 2.6
2emb|AL353573.10| Human DNA sequence from clone RP11-550E18 on ch... 40 2.6
3gb|AC149135.2| Medicago truncatula chromosome 2 BAC clone mth2-3... 40 2.6
4gb|AC008319.4|AC008319 Drosophila melanogaster, chromosome 2L, r... 40 2.6
5emb|AL731729.10| Mouse DNA sequence from clone RP23-92L12 on chr... 40 2.6
6gb|AE003587.4| Drosophila melanogaster chromosome 2L, section 4 ... 40 2.6
7dbj|AK114671.1| Ciona intestinalis cDNA, clone:cieg010g19, full ... 40 2.6

>gb|AC129091.19| Medicago truncatula clone mth2-15j7, complete sequence
          Length = 106540

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 62    aaagttacactcttatcaaa 81
             ||||||||||||||||||||
Sbjct: 92380 aaagttacactcttatcaaa 92361



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>emb|AL353573.10| Human DNA sequence from clone RP11-550E18 on chromosome 9 Contains a
             solute carrier family 25 (mitochondrial carrier; adenine
             nucleotide translocator), member 5 (SLC25A5) (ANT2)
             pseudogene, complete sequence
          Length = 166664

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 150   tttacaacacagcgaaaacgaacaaata 177
             |||||| ||||| |||||||||||||||
Sbjct: 20150 tttacagcacagtgaaaacgaacaaata 20177



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>gb|AC149135.2| Medicago truncatula chromosome 2 BAC clone mth2-31g23, complete
             sequence
          Length = 113812

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 62    aaagttacactcttatcaaa 81
             ||||||||||||||||||||
Sbjct: 94991 aaagttacactcttatcaaa 95010



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>gb|AC008319.4|AC008319 Drosophila melanogaster, chromosome 2L, region 21E-22A, BAC clone
              BACR38A03, complete sequence
          Length = 189315

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 157    cacagcgaaaacgaacaaataaag 180
              ||||||||||||||||| ||||||
Sbjct: 161764 cacagcgaaaacgaacacataaag 161741



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>emb|AL731729.10| Mouse DNA sequence from clone RP23-92L12 on chromosome X, complete
             sequence
          Length = 216656

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 56    acagataaagttacactctt 75
             ||||||||||||||||||||
Sbjct: 39645 acagataaagttacactctt 39626



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>gb|AE003587.4| Drosophila melanogaster chromosome 2L, section 4 of 83 of the complete
              sequence
          Length = 314549

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 157    cacagcgaaaacgaacaaataaag 180
              ||||||||||||||||| ||||||
Sbjct: 233928 cacagcgaaaacgaacacataaag 233951



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>dbj|AK114671.1| Ciona intestinalis cDNA, clone:cieg010g19, full insert sequence
          Length = 1388

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 79 aaagtcgaaagcagagaaac 98
          ||||||||||||||||||||
Sbjct: 54 aaagtcgaaagcagagaaac 73


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,609,221
Number of Sequences: 3902068
Number of extensions: 1609221
Number of successful extensions: 111048
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 111026
Number of HSP's gapped (non-prelim): 22
length of query: 207
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 185
effective length of database: 17,147,199,772
effective search space: 3172231957820
effective search space used: 3172231957820
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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