ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl29e11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 127 3e-26
2dbj|AP003334.4| Oryza sativa (japonica cultivar-group) genomic D... 127 3e-26
3dbj|AK061023.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 3e-26
4ref|XM_463327.1| Oryza sativa (japonica cultivar-group), predic... 121 2e-24
5gb|AY108969.1| Zea mays PCO147581 mRNA sequence 74 4e-10
6gb|DQ308532.1| Triticum monococcum cultivar DV92 carbamoylphosph... 66 1e-07
7gb|AC009027.10| Homo sapiens chromosome 16 clone RP11-123C5, com... 46 0.091
8gb|AC009131.6|AC009131 Homo sapiens chromosome 16 clone RP11-502... 46 0.091
9emb|AL837505.21| Mouse DNA sequence from clone RP23-181N6 on chr... 42 1.4
10gb|AC092120.4| Homo sapiens chromosome 16 clone RP1-168P16, comp... 40 5.6
11gb|AC127493.4| Homo sapiens chromosome 18, clone RP11-539C8, com... 40 5.6
12emb|AL109842.7|HSDJ726A1 Human DNA sequence from clone RP4-726A1... 40 5.6
13dbj|BA000032.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromo... 40 5.6
14gb|AC005693.3| Arabidopsis thaliana chromosome 2 clone T25N22 ma... 40 5.6
15gb|AC103890.1| 16q24.3 clone, complete sequence 40 5.6
16gb|AC137932.1| Homo sapiens chromosome 16 clone GS2-740I5, compl... 40 5.6
17gb|AC013264.4| Homo sapiens BAC clone RP11-184N4 from 2, complet... 40 5.6
18gb|AC135335.3| Homo sapiens chromosome 18, clone RP13-1026H1, co... 40 5.6
19gb|AE000666.1| Methanothermobacter thermautotrophicus str. Delta... 40 5.6 
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  127 bits (64), Expect = 3e-26
 Identities = 169/204 (82%)
 Strand = Plus / Minus

                                                                            
Query: 214      aagggtatgaccctaaggggcggcttgtgcagctggcaacttctgtggtgcatcagcagg 273
                ||||| ||||||||||| |||   ||| || ||| |||| ||||| | |||||| | || 
Sbjct: 21893717 aagggcatgaccctaagaggcactttgcgctgcttgcaagttctgggatgcatctgtagt 21893658

                                                                            
Query: 274      ctggaaatagtcttgcaatgcaagaatctcaatggacttgttcttcatactcttgatggc 333
                |||||| || ||||||||||| ||| ||||||| || ||||||||||  || ||||| ||
Sbjct: 21893657 ctggaagtaatcttgcaatgcgagagtctcaattgatttgttcttcaagcttttgatagc 21893598

                                                                            
Query: 334      gtccatggtagcccgagcaccatccacggttgtaattatggggaccttgtaggccagggc 393
                 || |||||||| || || ||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 21893597 atcgatggtagcacgcgccccatccacggtagtaattatcgggaccttgtaggccagggc 21893538

                                        
Query: 394      tagcctgcgcagctggaggccatc 417
                 |  ||||| ||||||||||||||
Sbjct: 21893537 caatctgcggagctggaggccatc 21893514
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>dbj|AP003334.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1114B07
          Length = 148060

 Score =  127 bits (64), Expect = 3e-26
 Identities = 169/204 (82%)
 Strand = Plus / Minus

                                                                          
Query: 214    aagggtatgaccctaaggggcggcttgtgcagctggcaacttctgtggtgcatcagcagg 273
              ||||| ||||||||||| |||   ||| || ||| |||| ||||| | |||||| | || 
Sbjct: 123010 aagggcatgaccctaagaggcactttgcgctgcttgcaagttctgggatgcatctgtagt 122951

                                                                          
Query: 274    ctggaaatagtcttgcaatgcaagaatctcaatggacttgttcttcatactcttgatggc 333
              |||||| || ||||||||||| ||| ||||||| || ||||||||||  || ||||| ||
Sbjct: 122950 ctggaagtaatcttgcaatgcgagagtctcaattgatttgttcttcaagcttttgatagc 122891

                                                                          
Query: 334    gtccatggtagcccgagcaccatccacggttgtaattatggggaccttgtaggccagggc 393
               || |||||||| || || ||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 122890 atcgatggtagcacgcgccccatccacggtagtaattatcgggaccttgtaggccagggc 122831

                                      
Query: 394    tagcctgcgcagctggaggccatc 417
               |  ||||| ||||||||||||||
Sbjct: 122830 caatctgcggagctggaggccatc 122807
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>dbj|AK061023.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-D04, full
           insert sequence
          Length = 1096

 Score =  127 bits (64), Expect = 3e-26
 Identities = 169/204 (82%)
 Strand = Plus / Minus

                                                                       
Query: 214 aagggtatgaccctaaggggcggcttgtgcagctggcaacttctgtggtgcatcagcagg 273
           ||||| ||||||||||| |||   ||| || ||| |||| ||||| | |||||| | || 
Sbjct: 994 aagggcatgaccctaagaggcactttgcgctgcttgcaagttctgggatgcatctgtagt 935

                                                                       
Query: 274 ctggaaatagtcttgcaatgcaagaatctcaatggacttgttcttcatactcttgatggc 333
           |||||| || ||||||||||| ||| ||||||| || ||||||||||  || ||||| ||
Sbjct: 934 ctggaagtaatcttgcaatgcgagagtctcaattgatttgttcttcaagcttttgatagc 875

                                                                       
Query: 334 gtccatggtagcccgagcaccatccacggttgtaattatggggaccttgtaggccagggc 393
            || |||||||| || || ||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 874 atcgatggtagcacgcgccccatccacggtagtaattatcgggaccttgtaggccagggc 815

                                   
Query: 394 tagcctgcgcagctggaggccatc 417
            |  ||||| ||||||||||||||
Sbjct: 814 caatctgcggagctggaggccatc 791
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>ref|XM_463327.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3279

 Score =  121 bits (61), Expect = 2e-24
 Identities = 142/169 (84%)
 Strand = Plus / Minus

                                                                        
Query: 249  gcaacttctgtggtgcatcagcaggctggaaatagtcttgcaatgcaagaatctcaatgg 308
            |||| ||||| | |||||| | || |||||| || ||||||||||| ||| ||||||| |
Sbjct: 3256 gcaagttctgggatgcatctgtagtctggaagtaatcttgcaatgcgagagtctcaattg 3197

                                                                        
Query: 309  acttgttcttcatactcttgatggcgtccatggtagcccgagcaccatccacggttgtaa 368
            | ||||||||||  || ||||| || || |||||||| || || ||||||||||| ||||
Sbjct: 3196 atttgttcttcaagcttttgatagcatcgatggtagcacgcgccccatccacggtagtaa 3137

                                                             
Query: 369  ttatggggaccttgtaggccagggctagcctgcgcagctggaggccatc 417
            |||| |||||||||||||||||||| |  ||||| ||||||||||||||
Sbjct: 3136 ttatcgggaccttgtaggccagggccaatctgcggagctggaggccatc 3088
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>gb|AY108969.1| Zea mays PCO147581 mRNA sequence
          Length = 637

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 121/149 (81%)
 Strand = Plus / Minus

                                                                       
Query: 263 gcatcagcaggctggaaatagtcttgcaatgcaagaatctcaatggacttgttcttcata 322
           ||||| |||| |||||| || |||||||| || || |||||||| ||||||| |||||  
Sbjct: 297 gcatcggcagtctggaagtaatcttgcaaggcgaggatctcaatcgacttgtccttcaag 238

                                                                       
Query: 323 ctcttgatggcgtccatggtagcccgagcaccatccacggttgtaattatggggaccttg 382
           ||||||||||| || ||||  || || || || || |||||||| || || || ||||||
Sbjct: 237 ctcttgatggcatctatggaggcacgtgcgccgtcgacggttgtgataattggcaccttg 178

                                        
Query: 383 taggccagggctagcctgcgcagctggag 411
           ||||| ||||| ||||| || ||||||||
Sbjct: 177 taggcgagggcaagcctacgaagctggag 149
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>gb|DQ308532.1| Triticum monococcum cultivar DV92 carbamoylphosphate synthase large
           subunit-like gene, partial sequence
          Length = 818

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 39/41 (95%)
 Strand = Plus / Minus

                                                    
Query: 377 accttgtaggccagggctagcctgcgcagctggaggccatc 417
           |||||||||||||| |||||||| |||||||||||||||||
Sbjct: 799 accttgtaggccagagctagcctacgcagctggaggccatc 759
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>gb|AC009027.10| Homo sapiens chromosome 16 clone RP11-123C5, complete sequence
          Length = 178256

 Score = 46.1 bits (23), Expect = 0.091
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 79    cccagcaaccaaatgtggtttcgacac 105
             ||||||||||||||||| |||||||||
Sbjct: 13768 cccagcaaccaaatgtgttttcgacac 13794
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>gb|AC009131.6|AC009131 Homo sapiens chromosome 16 clone RP11-502K10, complete sequence
          Length = 180835

 Score = 46.1 bits (23), Expect = 0.091
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 79    cccagcaaccaaatgtggtttcgacac 105
             ||||||||||||||||| |||||||||
Sbjct: 98308 cccagcaaccaaatgtgttttcgacac 98334
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>emb|AL837505.21| Mouse DNA sequence from clone RP23-181N6 on chromosome 4, complete
              sequence
          Length = 186045

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 179    aataaagacattacatggaaa 199
              |||||||||||||||||||||
Sbjct: 110194 aataaagacattacatggaaa 110214
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>gb|AC092120.4| Homo sapiens chromosome 16 clone RP1-168P16, complete sequence
          Length = 113368

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 267  cagcaggctggaaatagtct 286
            ||||||||||||||||||||
Sbjct: 2058 cagcaggctggaaatagtct 2077
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>gb|AC127493.4| Homo sapiens chromosome 18, clone RP11-539C8, complete sequence
          Length = 105459

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 311   ttgttcttcatactcttgat 330
             ||||||||||||||||||||
Sbjct: 89901 ttgttcttcatactcttgat 89920
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>emb|AL109842.7|HSDJ726A1 Human DNA sequence from clone RP4-726A1 on chromosome 6q22.2-23.1
             Contains part of the TCBA1 gene for T-cell lymphoma
             breakpoint associated target 1, complete sequence
          Length = 120998

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 273   gctggaaatagtcttgcaat 292
             ||||||||||||||||||||
Sbjct: 64505 gctggaaatagtcttgcaat 64486
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>dbj|BA000032.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromosome 2, complete sequence
          Length = 1877212

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 120     tatcgcagcagcagataagc 139
               ||||||||||||||||||||
Sbjct: 1191289 tatcgcagcagcagataagc 1191270
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>gb|AC005693.3| Arabidopsis thaliana chromosome 2 clone T25N22 map mi310, complete
             sequence
          Length = 80891

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 25    tactcttacacattagaaat 44
             ||||||||||||||||||||
Sbjct: 13207 tactcttacacattagaaat 13226
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>gb|AC103890.1| 16q24.3 clone, complete sequence
          Length = 129848

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 267  cagcaggctggaaatagtct 286
            ||||||||||||||||||||
Sbjct: 8895 cagcaggctggaaatagtct 8876
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>gb|AC137932.1| Homo sapiens chromosome 16 clone GS2-740I5, complete sequence
          Length = 129785

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 267    cagcaggctggaaatagtct 286
              ||||||||||||||||||||
Sbjct: 120891 cagcaggctggaaatagtct 120910
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>gb|AC013264.4| Homo sapiens BAC clone RP11-184N4 from 2, complete sequence
          Length = 149445

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 26     actcttacacattagaaatacaaa 49
              ||||||| ||||||||||||||||
Sbjct: 118148 actcttaaacattagaaatacaaa 118125
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>gb|AC135335.3| Homo sapiens chromosome 18, clone RP13-1026H1, complete sequence
          Length = 155498

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 311   ttgttcttcatactcttgat 330
             ||||||||||||||||||||
Sbjct: 32039 ttgttcttcatactcttgat 32020
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>gb|AE000666.1| Methanothermobacter thermautotrophicus str. Delta H, complete genome
          Length = 1751377

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 369     ttatggggaccttgtaggccaggg 392
               ||||||||||| ||||||||||||
Sbjct: 1599060 ttatggggaccgtgtaggccaggg 1599083


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,712,840
Number of Sequences: 3902068
Number of extensions: 4712840
Number of successful extensions: 109593
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 109527
Number of HSP's gapped (non-prelim): 66
length of query: 417
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 395
effective length of database: 17,147,199,772
effective search space: 6773143909940
effective search space used: 6773143909940
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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