ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl29e10 |
|---|---|
| Clone Library Name | barley_pub |
>UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2| Length = 1051 Score = 62.8 bits (151), Expect = 4e-10 Identities = 25/32 (78%), Positives = 30/32 (93%) Frame = -1 Query: 434 VPAYRKHFDVVVACEDDDGNDIDIPLISIYFR 339 VP+YR+H DVVVACEDDD ND+DIPL+S+YFR Sbjct: 1020 VPSYRRHLDVVVACEDDDDNDVDIPLVSVYFR 1051
>UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1| Length = 1051 Score = 62.8 bits (151), Expect = 4e-10 Identities = 25/32 (78%), Positives = 30/32 (93%) Frame = -1 Query: 434 VPAYRKHFDVVVACEDDDGNDIDIPLISIYFR 339 VP+YR+H DVVVACEDDD ND+DIPL+S+YFR Sbjct: 1020 VPSYRRHLDVVVACEDDDDNDVDIPLVSVYFR 1051
>UBE13_WHEAT (P31252) Ubiquitin-activating enzyme E1 3| Length = 1053 Score = 57.0 bits (136), Expect = 2e-08 Identities = 22/32 (68%), Positives = 28/32 (87%) Frame = -1 Query: 434 VPAYRKHFDVVVACEDDDGNDIDIPLISIYFR 339 VP YR+H D+ VACED+D ND+DIPL+S+YFR Sbjct: 1022 VPEYRRHLDIGVACEDEDENDVDIPLVSVYFR 1053
>UBP38_HUMAN (Q8NB14) Ubiquitin carboxyl-terminal hydrolase 38 (EC 3.1.2.15)| (Ubiquitin thioesterase 38) (Ubiquitin-specific-processing protease 38) (Deubiquitinating enzyme 38) (HP43.8KD) Length = 1042 Score = 32.3 bits (72), Expect = 0.51 Identities = 17/48 (35%), Positives = 26/48 (54%) Frame = -1 Query: 170 VWVLRLCCCMPTI*RCAMLSDVLMNAIACYPQRSIRLIFWDCLMIFLG 27 V VLR+ C P CA LSD+L + + C P+ + + F L+ +G Sbjct: 129 VEVLRMVCERPEPQLCARLSDLLTDFVQCIPKGKLSITFCQQLVRTIG 176
>UBP38_MOUSE (Q8BW70) Ubiquitin carboxyl-terminal hydrolase 38 (EC 3.1.2.15)| (Ubiquitin thioesterase 38) (Ubiquitin-specific-processing protease 38) (Deubiquitinating enzyme 38) Length = 1042 Score = 32.0 bits (71), Expect = 0.67 Identities = 17/48 (35%), Positives = 26/48 (54%) Frame = -1 Query: 170 VWVLRLCCCMPTI*RCAMLSDVLMNAIACYPQRSIRLIFWDCLMIFLG 27 V VLR+ C P CA LSD+L + + C P+ + + F L+ +G Sbjct: 129 VEVLRMVCERPEPVLCARLSDLLTDFVQCVPKGKLSVTFCQQLVRTIG 176
>UBA1_SCHPO (O94609) Ubiquitin-activating enzyme E1 1 (Poly(A)+ RNA transport| protein 3) Length = 1012 Score = 31.6 bits (70), Expect = 0.87 Identities = 10/26 (38%), Positives = 18/26 (69%) Frame = -1 Query: 425 YRKHFDVVVACEDDDGNDIDIPLISI 348 +RKH + + C+D +G D+++P I I Sbjct: 985 FRKHLVLEICCDDANGEDVEVPFICI 1010
>CYSK_BUCAI (P57171) Cysteine synthase (EC 2.5.1.47) (O-acetylserine| sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase) Length = 315 Score = 31.2 bits (69), Expect = 1.1 Identities = 13/40 (32%), Positives = 19/40 (47%) Frame = +2 Query: 14 NHQAIPKISSNNPKISI*CYAVDNRLWHSSKHQTASHTFK 133 N + KI S NP S+ C N +WH+ K+ + K Sbjct: 25 NGNILVKIESRNPSFSVKCRIGANMIWHAEKNNNINKNVK 64
>UBA1_CANAL (P52495) Ubiquitin-activating enzyme E1 1 (Fragment)| Length = 205 Score = 30.4 bits (67), Expect = 1.9 Identities = 9/29 (31%), Positives = 20/29 (68%) Frame = -1 Query: 434 VPAYRKHFDVVVACEDDDGNDIDIPLISI 348 VP++ K+ + C+D++G D+++P I + Sbjct: 175 VPSHVKNLIFEICCDDEEGEDVEVPYICV 203
>ARR18_ARATH (Q9FGT7) Two-component response regulator ARR18| Length = 635 Score = 30.4 bits (67), Expect = 1.9 Identities = 17/56 (30%), Positives = 25/56 (44%) Frame = +3 Query: 93 GIHQNIRQHRTPSNSWHATTEPKDPHKTLGRWTLTPLAITRLPMHKKTKPAKKGFG 260 G HQN P ++H+T P+ + L + T +PL + P K KG G Sbjct: 326 GHHQNSSNSANPFGTYHSTLSPRIQNVNLFQRTSSPLEPLQFPRSKSYIGDFKGLG 381
>ODFP_PIG (Q29077) Outer dense fiber protein| Length = 262 Score = 29.6 bits (65), Expect = 3.3 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = +1 Query: 226 IRKPNRLRRVLECFKHLSTGILCTVFIHPH 315 I+K +R R L C ST LC +++HP+ Sbjct: 15 IKKVDRELRQLRCIDEFSTRCLCDLYMHPY 44
>ODFP_HUMAN (Q14990) Outer dense fiber protein| Length = 250 Score = 29.6 bits (65), Expect = 3.3 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = +1 Query: 226 IRKPNRLRRVLECFKHLSTGILCTVFIHPH 315 I+K +R R L C ST LC +++HP+ Sbjct: 15 IKKVDRELRQLRCIDEFSTRCLCDLYMHPY 44
>ODFP_BOVIN (Q29438) Outer dense fiber protein| Length = 262 Score = 29.3 bits (64), Expect = 4.3 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = +1 Query: 226 IRKPNRLRRVLECFKHLSTGILCTVFIHPH 315 I+K +R R L C LS LC +++HP+ Sbjct: 15 IKKVDRELRQLRCIDELSARCLCDLYMHPY 44
>ODFP_MOUSE (Q61999) Outer dense fiber protein| Length = 247 Score = 28.9 bits (63), Expect = 5.7 Identities = 11/30 (36%), Positives = 19/30 (63%) Frame = +1 Query: 226 IRKPNRLRRVLECFKHLSTGILCTVFIHPH 315 I+K +R R L C +S+ LC +++HP+ Sbjct: 15 IKKVDRELRQLRCIDEISSRCLCDLYMHPY 44
>ODFP_RAT (P21769) Outer dense fiber protein (Protein RT7) (RTS 5/1)| Length = 245 Score = 28.9 bits (63), Expect = 5.7 Identities = 11/30 (36%), Positives = 19/30 (63%) Frame = +1 Query: 226 IRKPNRLRRVLECFKHLSTGILCTVFIHPH 315 I+K +R R L C +S+ LC +++HP+ Sbjct: 15 IKKVDRELRQLRCIDEISSRCLCDLYMHPY 44
>YPD7_CAEEL (Q11186) Hypothetical protein C05D11.7| Length = 621 Score = 28.5 bits (62), Expect = 7.4 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 5/46 (10%) Frame = -2 Query: 244 AGLVFLCIGSLVIANGVSVHLPS-----VLCGSFGSVVACQLFEGV 122 +G FLC+ +A + + P +L S GS+VAC L GV Sbjct: 16 SGCGFLCVYHAGVAAAIKEYAPELLQNKILGASAGSIVACGLITGV 61
>PEPB_HAEI8 (Q4QM33) Peptidase B (EC 3.4.11.23) (Aminopeptidase B)| Length = 434 Score = 28.1 bits (61), Expect = 9.7 Identities = 12/37 (32%), Positives = 21/37 (56%) Frame = -3 Query: 345 LPIGRCCHSIVRMDEDCAKNSCGEMFETFQNPS*PVW 235 + +G HS++ MD+D KN +F++ Q + P W Sbjct: 314 MAVGNDYHSVLSMDDDLVKN----LFQSAQEENEPFW 346
>STUB_DROME (Q05319) Serine proteinase stubble (EC 3.4.21.-) (Protein| stubble-stubbloid) [Contains: Serine proteinase stubble non-catalytic chain; Serine proteinase stubble catalytic chain] Length = 787 Score = 28.1 bits (61), Expect = 9.7 Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 7/67 (10%) Frame = +3 Query: 72 TLWITGYGIHQNIRQHRTPSNSWHATTEPK---DPHKTLGRWTLTPLAITRLPM----HK 230 ++W T Q + + N W TTEP P T WT I LPM K Sbjct: 280 SIWHTSTQQQQQQQHQQNQQNHWQMTTEPSFITKPRPT--GWTKP--GIVNLPMPARPSK 335 Query: 231 KTKPAKK 251 +KP KK Sbjct: 336 PSKPTKK 342
>Y630_METJA (Q58047) Putative phosphate permease MJ0630| Length = 297 Score = 28.1 bits (61), Expect = 9.7 Identities = 14/43 (32%), Positives = 22/43 (51%) Frame = -2 Query: 250 FLAGLVFLCIGSLVIANGVSVHLPSVLCGSFGSVVACQLFEGV 122 ++ G +FLC+G+ + N VS L + S S QL G+ Sbjct: 191 YIIGAIFLCLGAYLYGNRVSETLSMITNLSVSSAFIAQLSGGL 233 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,880,519 Number of Sequences: 219361 Number of extensions: 1262869 Number of successful extensions: 2998 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 2952 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2997 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
