ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl29e09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SOTB_SHIFL (Q7UCG7) Probable sugar efflux transporter 29 2.4
2SOTB_ECOLI (P31122) Sugar efflux transporter 29 2.4
3SOTB_ECOL6 (Q8FHE6) Probable sugar efflux transporter 29 2.4
4SOTB_ECO57 (P58529) Probable sugar efflux transporter 29 2.4
5SOTB_SALTY (P58531) Probable sugar efflux transporter 29 3.1
6SOTB_SALTI (P58530) Probable sugar efflux transporter 29 3.1
7ATS12_MOUSE (Q811B3) ADAMTS-12 precursor (EC 3.4.24.-) (A disint... 29 3.1
8RORG_HUMAN (P51449) Nuclear receptor ROR-gamma (Nuclear receptor... 28 6.9
9RORG_MOUSE (P51450) Nuclear receptor ROR-gamma (Nuclear receptor... 27 9.0

>SOTB_SHIFL (Q7UCG7) Probable sugar efflux transporter|
          Length = 396

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +2

Query: 86  THNRISRRATVARLMTIELAAALFNTTKQV 175
           T N +SR+    R++T+ +AA +FNTT+ V
Sbjct: 2   TTNTVSRKVAWLRVVTLAVAAFIFNTTEFV 31



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>SOTB_ECOLI (P31122) Sugar efflux transporter|
          Length = 396

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +2

Query: 86  THNRISRRATVARLMTIELAAALFNTTKQV 175
           T N +SR+    R++T+ +AA +FNTT+ V
Sbjct: 2   TTNTVSRKVAWLRVVTLAVAAFIFNTTEFV 31



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>SOTB_ECOL6 (Q8FHE6) Probable sugar efflux transporter|
          Length = 396

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +2

Query: 86  THNRISRRATVARLMTIELAAALFNTTKQV 175
           T N +SR+    R++T+ +AA +FNTT+ V
Sbjct: 2   TTNTVSRKVAWLRVVTLAVAAFIFNTTEFV 31



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>SOTB_ECO57 (P58529) Probable sugar efflux transporter|
          Length = 396

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +2

Query: 86  THNRISRRATVARLMTIELAAALFNTTKQV 175
           T N +SR+    R++T+ +AA +FNTT+ V
Sbjct: 2   TTNTVSRKVAWLRVVTLAVAAFIFNTTEFV 31



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>SOTB_SALTY (P58531) Probable sugar efflux transporter|
          Length = 396

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +2

Query: 86  THNRISRRATVARLMTIELAAALFNTTKQV 175
           T N +SR+    R++T+ +AA +FNTT+ V
Sbjct: 2   TINPVSRKVAWLRVVTLAIAAFIFNTTEFV 31



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>SOTB_SALTI (P58530) Probable sugar efflux transporter|
          Length = 396

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +2

Query: 86  THNRISRRATVARLMTIELAAALFNTTKQV 175
           T N +SR+    R++T+ +AA +FNTT+ V
Sbjct: 2   TINPVSRKVAWLRVVTLAIAAFIFNTTEFV 31



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>ATS12_MOUSE (Q811B3) ADAMTS-12 precursor (EC 3.4.24.-) (A disintegrin and|
            metalloproteinase with thrombospondin motifs 12) (ADAM-TS
            12) (ADAM-TS12)
          Length = 1600

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
 Frame = -3

Query: 124  SCNCCSSAY--SVVCSKAVPVDCTFVSRL**CRACRLTSC 11
            S  C   AY  SV CS  V  DCT + R    + C L  C
Sbjct: 1331 STTCGLGAYWRSVECSSGVDADCTTIQRPDPAKKCHLRPC 1370



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>RORG_HUMAN (P51449) Nuclear receptor ROR-gamma (Nuclear receptor RZR-gamma)|
          Length = 518

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 112 CSSAYSVVCSKAVPVDCTFVSRL**CRACRLTSCV 8
           C++AYS    +  P+D T  +R   C+ CRL  C+
Sbjct: 61  CNAAYSCTRQQNCPIDRTSRNR---CQHCRLQKCL 92



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>RORG_MOUSE (P51450) Nuclear receptor ROR-gamma (Nuclear receptor RZR-gamma)|
           (Thymus orphan receptor) (TOR)
          Length = 516

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 18/50 (36%), Positives = 23/50 (46%)
 Frame = -3

Query: 157 E*CCS*LDRHQSCNCCSSAYSVVCSKAVPVDCTFVSRL**CRACRLTSCV 8
           E C     R Q CN    AYS    +  P+D T  +R   C+ CRL  C+
Sbjct: 49  EGCKGFFRRSQQCNV---AYSCTRQQNCPIDRTSRNR---CQHCRLQKCL 92


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,973,542
Number of Sequences: 219361
Number of extensions: 665055
Number of successful extensions: 2144
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2144
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 1375720320
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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