ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl29e08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_480436.1| Oryza sativa (japonica cultivar-group), mRNA 165 2e-37
2dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 165 2e-37
3dbj|AP004656.3| Oryza sativa (japonica cultivar-group) genomic D... 165 2e-37
4dbj|AK099689.1| Oryza sativa (japonica cultivar-group) cDNA clon... 165 2e-37
5ref|NM_148232.2| Arabidopsis thaliana unknown protein AT4G04885 ... 58 3e-05
6emb|AL161502.2|ATCHRIV14 Arabidopsis thaliana DNA chromosome 4, ... 58 3e-05
7dbj|AK119152.1| Arabidopsis thaliana At4g04885 mRNA for unknown ... 58 3e-05
8gb|AF118223.2|T4B21 Arabidopsis thaliana BAC T4B21 58 3e-05
9dbj|AP004568.3| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
10emb|AL441988.11| Human DNA sequence from clone RP11-348I14 on ch... 46 0.10
11emb|AL117574.1|HSM801105 Homo sapiens mRNA; cDNA DKFZp434L2221 (... 46 0.10
12emb|AL161626.20| Human DNA sequence from clone RP11-214N16 on ch... 44 0.40
13gb|U95743.1|HUU95743 Homo sapiens chromosome 16 BAC clone CIT987... 42 1.6
14gb|AC105325.11| Mus musculus chromosome 1, clone RP24-455G23, co... 42 1.6
15gb|AC115917.10| Mus musculus chromosome 1, clone RP24-488H6, com... 42 1.6
16gb|AC116618.4| Homo sapiens BAC clone RP11-98L17 from 4, complet... 42 1.6
17gb|AC009173.9| Homo sapiens chromosome 16 clone RP11-99H5, compl... 42 1.6
18ref|XM_323475.1| Neurospora crassa OR74A related to TRANSCRIPTIO... 40 6.3
19ref|XM_956199.1| Neurospora crassa OR74A related to TRANSCRIPTIO... 40 6.3
20gb|AC125235.3| Mus musculus BAC clone RP23-23D1 from chromosome ... 40 6.3
21emb|BX548019.36| Zebrafish DNA sequence from clone DKEY-20D1 in ... 40 6.3
22gb|AC126244.3| Mus musculus BAC clone RP24-319A6 from chromosome... 40 6.3
23emb|CR847924.7| Zebrafish DNA sequence from clone CH211-261H11 i... 40 6.3
24gb|AC124724.4| Mus musculus BAC clone RP23-446L16 from chromosom... 40 6.3
25gb|AC123839.2| Mus musculus BAC clone RP23-392K4 from 17, comple... 40 6.3
26emb|CR759903.8| Zebrafish DNA sequence from clone CH211-138E6 in... 40 6.3
27emb|AL356503.18| Human DNA sequence from clone RP13-159A24 on ch... 40 6.3
28gb|AC103018.7| Rattus norvegicus 1 CH230-196F22 (Children's Hosp... 40 6.3
29emb|AL513463.1|NC9G6 Neurospora crassa DNA linkage group V Cosmi... 40 6.3
30gb|AC009711.10| Homo sapiens chromosome 15, clone RP11-356B18, c... 40 6.3
31gb|AC107990.5| Homo sapiens chromosome 18, clone RP11-103A19, co... 40 6.3
32gb|AC100845.2| Homo sapiens chromosome 18, clone RP11-680N20, co... 40 6.3
33gb|AC098847.4| Homo sapiens chromosome 18, clone RP11-824M15, co... 40 6.3
34emb|BX248080.21| Zebrafish DNA sequence from clone CH211-226C1 i... 40 6.3
35emb|BX571699.10| Zebrafish DNA sequence from clone DKEYP-116G9 i... 40 6.3
36gb|AC157822.2| Mus musculus BAC clone RP23-392J15 from chromosom... 40 6.3
37gb|AC160407.6| Mus musculus 10 BAC RP24-445P5 (Roswell Park Canc... 40 6.3
38gb|AC090181.9| Homo sapiens chromosome 15, clone RP11-797A18, co... 40 6.3
39emb|AL954845.21| Zebrafish DNA sequence from clone DKEY-30H3, co... 40 6.3
40gb|AC021049.12| Homo sapiens 12 BAC RP11-904M10 (Roswell Park Ca... 40 6.3
41emb|BX649622.7| Zebrafish DNA sequence from clone CH211-128B10 i... 40 6.3
42gb|AC108814.22| Mus musculus chromosome 19, clone RP23-235H21, c... 40 6.3
43gb|U83833.1|GGU83833 Gallus gallus T-cell receptor alpha chain g... 40 6.3
44emb|AL928901.8| Zebrafish DNA sequence from clone CH211-155M12 i... 40 6.3 
>ref|XM_480436.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3078

 Score =  165 bits (83), Expect = 2e-37
 Identities = 119/131 (90%)
 Strand = Plus / Minus

                                                                        
Query: 334  ccagattgacatttggaatggacaataggccccaaatgcgacctttggagaccaacaata 393
            |||||| ||||||| | |||||||||||| ||||| ||||||||||  |||||| |||||
Sbjct: 3046 ccagatagacatttagcatggacaataggtcccaactgcgacctttctagaccaccaata 2987

                                                                        
Query: 394  ttaccatcaggtgcattcatgtaaactgcacctttgtacatccactcttcagtttcatcg 453
            || ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| 
Sbjct: 2986 tttccatctggtgcattcatataaactgcacctttgtacatccactcttcagtttcatca 2927

                       
Query: 454  ctgtagaaatc 464
            |||||||||||
Sbjct: 2926 ctgtagaaatc 2916
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score =  165 bits (83), Expect = 2e-37
 Identities = 119/131 (90%)
 Strand = Plus / Plus

                                                                           
Query: 334     ccagattgacatttggaatggacaataggccccaaatgcgacctttggagaccaacaata 393
               |||||| ||||||| | |||||||||||| ||||| ||||||||||  |||||| |||||
Sbjct: 5114652 ccagatagacatttagcatggacaataggtcccaactgcgacctttctagaccaccaata 5114711

                                                                           
Query: 394     ttaccatcaggtgcattcatgtaaactgcacctttgtacatccactcttcagtttcatcg 453
               || ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| 
Sbjct: 5114712 tttccatctggtgcattcatataaactgcacctttgtacatccactcttcagtttcatca 5114771

                          
Query: 454     ctgtagaaatc 464
               |||||||||||
Sbjct: 5114772 ctgtagaaatc 5114782



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 46/51 (90%), Gaps = 1/51 (1%)
 Strand = Plus / Plus

                                                                  
Query: 212     actaagcataccaaaatgtgatttctccagtaattttacatgtcttgtcta 262
               ||||||||||||||||| || | |||||||| | |||||||||||||||||
Sbjct: 5113000 actaagcataccaaaatctgctctctccagt-agtttacatgtcttgtcta 5113049
to top
>dbj|AP004656.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0020B10
          Length = 136175

 Score =  165 bits (83), Expect = 2e-37
 Identities = 119/131 (90%)
 Strand = Plus / Plus

                                                                         
Query: 334   ccagattgacatttggaatggacaataggccccaaatgcgacctttggagaccaacaata 393
             |||||| ||||||| | |||||||||||| ||||| ||||||||||  |||||| |||||
Sbjct: 64416 ccagatagacatttagcatggacaataggtcccaactgcgacctttctagaccaccaata 64475

                                                                         
Query: 394   ttaccatcaggtgcattcatgtaaactgcacctttgtacatccactcttcagtttcatcg 453
             || ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| 
Sbjct: 64476 tttccatctggtgcattcatataaactgcacctttgtacatccactcttcagtttcatca 64535

                        
Query: 454   ctgtagaaatc 464
             |||||||||||
Sbjct: 64536 ctgtagaaatc 64546



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 46/51 (90%), Gaps = 1/51 (1%)
 Strand = Plus / Plus

                                                                
Query: 212   actaagcataccaaaatgtgatttctccagtaattttacatgtcttgtcta 262
             ||||||||||||||||| || | |||||||| | |||||||||||||||||
Sbjct: 62764 actaagcataccaaaatctgctctctccagt-agtttacatgtcttgtcta 62813
to top
>dbj|AK099689.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073B17, full
            insert sequence
          Length = 3320

 Score =  165 bits (83), Expect = 2e-37
 Identities = 119/131 (90%)
 Strand = Plus / Minus

                                                                        
Query: 334  ccagattgacatttggaatggacaataggccccaaatgcgacctttggagaccaacaata 393
            |||||| ||||||| | |||||||||||| ||||| ||||||||||  |||||| |||||
Sbjct: 3046 ccagatagacatttagcatggacaataggtcccaactgcgacctttctagaccaccaata 2987

                                                                        
Query: 394  ttaccatcaggtgcattcatgtaaactgcacctttgtacatccactcttcagtttcatcg 453
            || ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| 
Sbjct: 2986 tttccatctggtgcattcatataaactgcacctttgtacatccactcttcagtttcatca 2927

                       
Query: 454  ctgtagaaatc 464
            |||||||||||
Sbjct: 2926 ctgtagaaatc 2916



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 46/51 (90%), Gaps = 1/51 (1%)
 Strand = Plus / Minus

                                                               
Query: 212  actaagcataccaaaatgtgatttctccagtaattttacatgtcttgtcta 262
            ||||||||||||||||| || | |||||||| | |||||||||||||||||
Sbjct: 3163 actaagcataccaaaatctgctctctccagt-agtttacatgtcttgtcta 3114
to top
>ref|NM_148232.2| Arabidopsis thaliana unknown protein AT4G04885 mRNA, complete cds
          Length = 3102

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                 
Query: 400  tcaggtgcattcatgtaaactgcacctttgtacatccactcttcagtttcatc 452
            ||||| ||||||||||| || ||||||||||||||||| || || ||||||||
Sbjct: 2417 tcaggagcattcatgtataccgcacctttgtacatccattcctcggtttcatc 2365
to top
>emb|AL161502.2|ATCHRIV14 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 14
          Length = 198563

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                 
Query: 400  tcaggtgcattcatgtaaactgcacctttgtacatccactcttcagtttcatc 452
            ||||| ||||||||||| || ||||||||||||||||| || || ||||||||
Sbjct: 7191 tcaggagcattcatgtataccgcacctttgtacatccattcctcggtttcatc 7139
to top
>dbj|AK119152.1| Arabidopsis thaliana At4g04885 mRNA for unknown protein, complete
            cds, clone: RAFL21-50-C04
          Length = 2713

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                 
Query: 400  tcaggtgcattcatgtaaactgcacctttgtacatccactcttcagtttcatc 452
            ||||| ||||||||||| || ||||||||||||||||| || || ||||||||
Sbjct: 2399 tcaggagcattcatgtataccgcacctttgtacatccattcctcggtttcatc 2347
to top
>gb|AF118223.2|T4B21 Arabidopsis thaliana BAC T4B21
          Length = 91470

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                  
Query: 400   tcaggtgcattcatgtaaactgcacctttgtacatccactcttcagtttcatc 452
             ||||| ||||||||||| || ||||||||||||||||| || || ||||||||
Sbjct: 90514 tcaggagcattcatgtataccgcacctttgtacatccattcctcggtttcatc 90462
to top
>dbj|AP004568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0547A06
          Length = 150922

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 46/51 (90%), Gaps = 1/51 (1%)
 Strand = Plus / Plus

                                                                 
Query: 212    actaagcataccaaaatgtgatttctccagtaattttacatgtcttgtcta 262
              ||||||||||||||||| || | |||||||| | |||||||||||||||||
Sbjct: 150557 actaagcataccaaaatctgctctctccagt-agtttacatgtcttgtcta 150606
to top
>emb|AL441988.11| Human DNA sequence from clone RP11-348I14 on chromosome 20 Contains the
             5' end of a novel gene, the C20orf80 gene for a protein
             similar to FSHD region gene 1 (FRG1), the MLLT10L gene for
             myeloid/lymphoid or mixed-lineage leukemia (trithorax
             homolog, Drosophila) (translocated to 10)-like pseudogene,
             a novel gene and two CpG islands, complete sequence
          Length = 69918

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 139   aagtattttacaattttacactactat 165
             |||||||||| ||||||||||||||||
Sbjct: 32018 aagtattttataattttacactactat 32044
to top
>emb|AL117574.1|HSM801105 Homo sapiens mRNA; cDNA DKFZp434L2221 (from clone DKFZp434L2221)
          Length = 3004

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 139  aagtattttacaattttacactactat 165
            |||||||||| ||||||||||||||||
Sbjct: 1666 aagtattttataattttacactactat 1692
to top
>emb|AL161626.20| Human DNA sequence from clone RP11-214N16 on chromosome 9 Contains the
             3' end of the GCNT1 gene for glucosaminyl (N-acetyl)
             transferase 1 core 2
             (beta-1,6-N-acetylglucosaminyltransferase), a
             peptidylprolyl isomerase A (cyclophilin A) (PPIA)
             pseudogene and the 3' end of the KIAA0376 gene, complete
             sequence
          Length = 183858

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 197   caggggaggggggaaactaagc 218
             ||||||||||||||||||||||
Sbjct: 14857 caggggaggggggaaactaagc 14836
to top
>gb|U95743.1|HUU95743 Homo sapiens chromosome 16 BAC clone CIT987-SK65D3, complete sequence
          Length = 192730

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 338    attgacatttggaatggacaa 358
              |||||||||||||||||||||
Sbjct: 167019 attgacatttggaatggacaa 167039
to top
>gb|AC105325.11| Mus musculus chromosome 1, clone RP24-455G23, complete sequence
          Length = 139801

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 269    accaaagaaactgaaataatggggc 293
              ||||||| |||||||||||||||||
Sbjct: 136493 accaaagcaactgaaataatggggc 136517
to top
>gb|AC115917.10| Mus musculus chromosome 1, clone RP24-488H6, complete sequence
          Length = 186588

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 269   accaaagaaactgaaataatggggc 293
             ||||||| |||||||||||||||||
Sbjct: 33331 accaaagcaactgaaataatggggc 33355
to top
>gb|AC116618.4| Homo sapiens BAC clone RP11-98L17 from 4, complete sequence
          Length = 153040

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 139    aagtattttacaattttacactact 163
              |||||||||| ||||||||||||||
Sbjct: 117813 aagtattttataattttacactact 117837
to top
>gb|AC009173.9| Homo sapiens chromosome 16 clone RP11-99H5, complete sequence
          Length = 149842

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 338   attgacatttggaatggacaa 358
             |||||||||||||||||||||
Sbjct: 16014 attgacatttggaatggacaa 16034
to top
>ref|XM_323475.1| Neurospora crassa OR74A related to TRANSCRIPTION INITIATION FACTOR
            TFIID 100 KDA SUBUNIT [MIPS] (NCU04136.1) partial mRNA
          Length = 2193

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 396  accatcaggtgcattcatgtaaactgcacctt 427
            |||| ||||| ||||| |||||||||||||||
Sbjct: 2162 accaccaggttcattcttgtaaactgcacctt 2131
to top
>ref|XM_956199.1| Neurospora crassa OR74A related to TRANSCRIPTION INITIATION FACTOR
            TFIID 100 KDA SUBUNIT [MIPS] (NCU04136.1) partial mRNA
          Length = 2193

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 396  accatcaggtgcattcatgtaaactgcacctt 427
            |||| ||||| ||||| |||||||||||||||
Sbjct: 2162 accaccaggttcattcttgtaaactgcacctt 2131
to top
>gb|AC125235.3| Mus musculus BAC clone RP23-23D1 from chromosome 8, complete sequence
          Length = 191753

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 268    aaccaaagaaactgaaataa 287
              ||||||||||||||||||||
Sbjct: 151058 aaccaaagaaactgaaataa 151077
to top
>emb|BX548019.36| Zebrafish DNA sequence from clone DKEY-20D1 in linkage group 6,
             complete sequence
          Length = 202848

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 270   ccaaagaaactgaaataatg 289
             ||||||||||||||||||||
Sbjct: 11822 ccaaagaaactgaaataatg 11841
to top
>gb|AC126244.3| Mus musculus BAC clone RP24-319A6 from chromosome 12, complete sequence
          Length = 175549

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 81    tagggcacacaccatggcaa 100
             ||||||||||||||||||||
Sbjct: 82963 tagggcacacaccatggcaa 82982
to top
>emb|CR847924.7| Zebrafish DNA sequence from clone CH211-261H11 in linkage group 18,
             complete sequence
          Length = 150088

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 172   attaacattctattcaaact 191
             ||||||||||||||||||||
Sbjct: 52133 attaacattctattcaaact 52152
to top
>gb|AC124724.4| Mus musculus BAC clone RP23-446L16 from chromosome 19, complete sequence
          Length = 179952

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 193    ttgccaggggaggggggaaactaa 216
              ||||||||||||||||||| ||||
Sbjct: 109316 ttgccaggggaggggggaatctaa 109339
to top
>gb|AC123839.2| Mus musculus BAC clone RP23-392K4 from 17, complete sequence
          Length = 204402

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 242    taattttacatgtcttgtct 261
              ||||||||||||||||||||
Sbjct: 166517 taattttacatgtcttgtct 166498
to top
>emb|CR759903.8| Zebrafish DNA sequence from clone CH211-138E6 in linkage group 9,
             complete sequence
          Length = 168689

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 108   gcaagttactcatgctccat 127
             ||||||||||||||||||||
Sbjct: 97112 gcaagttactcatgctccat 97131
to top
>emb|AL356503.18| Human DNA sequence from clone RP13-159A24 on chromosome Xq27.1-28,
             complete sequence
          Length = 147043

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 425   ctttgtacatccactcttca 444
             ||||||||||||||||||||
Sbjct: 65867 ctttgtacatccactcttca 65886
to top
>gb|AC103018.7| Rattus norvegicus 1 CH230-196F22 (Children's Hospital Oakland Research
             Institute) complete sequence
          Length = 212568

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 105   agagcaagttactcatgctc 124
             ||||||||||||||||||||
Sbjct: 85130 agagcaagttactcatgctc 85111
to top
>emb|AL513463.1|NC9G6 Neurospora crassa DNA linkage group V Cosmid contig 9G6
          Length = 125561

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 396   accatcaggtgcattcatgtaaactgcacctt 427
             |||| ||||| ||||| |||||||||||||||
Sbjct: 73050 accaccaggttcattcttgtaaactgcacctt 73081
to top
>gb|AC009711.10| Homo sapiens chromosome 15, clone RP11-356B18, complete sequence
          Length = 205925

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 192   gttgccaggggaggggggaa 211
             ||||||||||||||||||||
Sbjct: 77978 gttgccaggggaggggggaa 77959
to top
>gb|AC107990.5| Homo sapiens chromosome 18, clone RP11-103A19, complete sequence
          Length = 166109

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 230    tgatttctccagtaatttta 249
              ||||||||||||||||||||
Sbjct: 159458 tgatttctccagtaatttta 159439
to top
>gb|AC100845.2| Homo sapiens chromosome 18, clone RP11-680N20, complete sequence
          Length = 174328

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 270   ccaaagaaactgaaataatg 289
             ||||||||||||||||||||
Sbjct: 66227 ccaaagaaactgaaataatg 66208
to top
>gb|AC098847.4| Homo sapiens chromosome 18, clone RP11-824M15, complete sequence
          Length = 206693

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 230    tgatttctccagtaatttta 249
              ||||||||||||||||||||
Sbjct: 132506 tgatttctccagtaatttta 132525
to top
>emb|BX248080.21| Zebrafish DNA sequence from clone CH211-226C1 in linkage group 5,
             complete sequence
          Length = 188075

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 127   tcactaaaacacaagtattttaca 150
             |||||||||||||||| |||||||
Sbjct: 11304 tcactaaaacacaagtcttttaca 11327
to top
>emb|BX571699.10| Zebrafish DNA sequence from clone DKEYP-116G9 in linkage group 6,
              complete sequence
          Length = 173467

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 270    ccaaagaaactgaaataatg 289
              ||||||||||||||||||||
Sbjct: 124286 ccaaagaaactgaaataatg 124267
to top
>gb|AC157822.2| Mus musculus BAC clone RP23-392J15 from chromosome 12, complete
             sequence
          Length = 185536

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 81    tagggcacacaccatggcaa 100
             ||||||||||||||||||||
Sbjct: 63591 tagggcacacaccatggcaa 63610
to top
>gb|AC160407.6| Mus musculus 10 BAC RP24-445P5 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 186970

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 338    attgacatttggaatggaca 357
              ||||||||||||||||||||
Sbjct: 157644 attgacatttggaatggaca 157663
to top
>gb|AC090181.9| Homo sapiens chromosome 15, clone RP11-797A18, complete sequence
          Length = 157793

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 413    tgtaaactgcacctttgtac 432
              ||||||||||||||||||||
Sbjct: 122668 tgtaaactgcacctttgtac 122649
to top
>emb|AL954845.21| Zebrafish DNA sequence from clone DKEY-30H3, complete sequence
          Length = 226343

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 108    gcaagttactcatgctccat 127
              ||||||||||||||||||||
Sbjct: 167683 gcaagttactcatgctccat 167702
to top
>gb|AC021049.12| Homo sapiens 12 BAC RP11-904M10 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 175315

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 147    tacaattttacactactatt 166
              ||||||||||||||||||||
Sbjct: 113945 tacaattttacactactatt 113964
to top
>emb|BX649622.7| Zebrafish DNA sequence from clone CH211-128B10 in linkage group 18,
              complete sequence
          Length = 180248

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 172    attaacattctattcaaact 191
              ||||||||||||||||||||
Sbjct: 144542 attaacattctattcaaact 144523
to top
>gb|AC108814.22| Mus musculus chromosome 19, clone RP23-235H21, complete sequence
          Length = 196556

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 193  ttgccaggggaggggggaaactaa 216
            ||||||||||||||||||| ||||
Sbjct: 3503 ttgccaggggaggggggaatctaa 3526
to top
>gb|U83833.1|GGU83833 Gallus gallus T-cell receptor alpha chain gene, partial cds, and
             defender against death protein 1 (DAD1) gene, complete cds
          Length = 31793

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 235   tctccagtaattttacatgt 254
             ||||||||||||||||||||
Sbjct: 25592 tctccagtaattttacatgt 25573
to top
>emb|AL928901.8| Zebrafish DNA sequence from clone CH211-155M12 in linkage group 5,
             complete sequence
          Length = 145957

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 127   tcactaaaacacaagtattttaca 150
             |||||||||||||||| |||||||
Sbjct: 56357 tcactaaaacacaagtcttttaca 56380


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,934,292
Number of Sequences: 3902068
Number of extensions: 4934292
Number of successful extensions: 95186
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95064
Number of HSP's gapped (non-prelim): 118
length of query: 465
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 443
effective length of database: 17,147,199,772
effective search space: 7596209498996
effective search space used: 7596209498996
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top