ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl29e06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DBP4_YARLI (Q6CGD1) ATP-dependent RNA helicase DBP4 (EC 3.6.1.-) 28 6.0

>DBP4_YARLI (Q6CGD1) ATP-dependent RNA helicase DBP4 (EC 3.6.1.-)|
          Length = 740

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +3

Query: 150 LQVTTTEEPARIKSFTAIHVDMACQVNLPNNQLDVSPRKKNA 275
           L +T TEEPA I+   A H+        P N+L + P KK +
Sbjct: 387 LFLTPTEEPAMIQRLEAKHI--------PINKLTIRPNKKKS 420


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,547,548
Number of Sequences: 219361
Number of extensions: 640706
Number of successful extensions: 1880
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1880
length of database: 80,573,946
effective HSP length: 69
effective length of database: 65,438,037
effective search space used: 1570512888
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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