Clone Name | rbastl29e06 |
---|---|
Clone Library Name | barley_pub |
>gb|AC125116.4| Mus musculus BAC clone RP24-261C22 from chromosome 16, complete sequence Length = 180726 Score = 46.1 bits (23), Expect = 0.060 Identities = 29/31 (93%) Strand = Plus / Plus Query: 134 ctcaaagaatccctagttacaagttacaaca 164 |||||||| |||| ||||||||||||||||| Sbjct: 68524 ctcaaagattccccagttacaagttacaaca 68554
>gb|AC124225.13| Mus musculus chromosome 16, clone RP23-83P23, complete sequence Length = 157891 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Plus Query: 169 aggaacctgcaagaatcaaatc 190 |||||||||||||||||||||| Sbjct: 103015 aggaacctgcaagaatcaaatc 103036
>gb|AC130607.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0017D10, complete sequence Length = 149870 Score = 42.1 bits (21), Expect = 0.93 Identities = 21/21 (100%) Strand = Plus / Plus Query: 149 gttacaagttacaacaaccga 169 ||||||||||||||||||||| Sbjct: 91915 gttacaagttacaacaaccga 91935
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 0.93 Identities = 21/21 (100%) Strand = Plus / Plus Query: 149 gttacaagttacaacaaccga 169 ||||||||||||||||||||| Sbjct: 20093590 gttacaagttacaacaaccga 20093610
>ref|NM_102773.2| Arabidopsis thaliana unknown protein AT1G30360 mRNA, complete cds Length = 2600 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 agttacaagttacaacaacc 167 |||||||||||||||||||| Sbjct: 2542 agttacaagttacaacaacc 2523
>emb|Z81143.1|CEZK265 Caenorhabditis elegans Cosmid ZK265, complete sequence Length = 36069 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 ttacaacaaccgaggaacct 176 |||||||||||||||||||| Sbjct: 29767 ttacaacaaccgaggaacct 29786
>gb|AY035092.1| Arabidopsis thaliana unknown protein (At1g30360) mRNA, complete cds Length = 2416 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 agttacaagttacaacaacc 167 |||||||||||||||||||| Sbjct: 2359 agttacaagttacaacaacc 2340
>emb|AL161552.2|ATCHRIV52 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 52 Length = 198427 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 agttacaagttacaacaacc 167 |||||||||||||||||||| Sbjct: 102694 agttacaagttacaacaacc 102713
>emb|AL022224.1|ATF1C12 Arabidopsis thaliana DNA chromosome 4, BAC clone F1C12 (ESSA project) Length = 111945 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 agttacaagttacaacaacc 167 |||||||||||||||||||| Sbjct: 35271 agttacaagttacaacaacc 35290
>gb|AC012215.11| Homo sapiens chromosome , clone RP11-345N15, complete sequence Length = 210723 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 acaatgacctgtgctactta 71 |||||||||||||||||||| Sbjct: 96067 acaatgacctgtgctactta 96048
>gb|AC083838.6| Homo sapiens chromosome 8, clone RP11-42L4, complete sequence Length = 156623 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 acaatgacctgtgctactta 71 |||||||||||||||||||| Sbjct: 25421 acaatgacctgtgctactta 25402
>dbj|AK221977.1| Arabidopsis thaliana mRNA for ERD4 protein, partial cds, clone: RAFL22-58-C09 Length = 801 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 agttacaagttacaacaacc 167 |||||||||||||||||||| Sbjct: 752 agttacaagttacaacaacc 733
>ref|NM_059848.3| Caenorhabditis elegans ZK265.7 (ZK265.7) mRNA, complete cds Length = 1386 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 ttacaacaaccgaggaacct 176 |||||||||||||||||||| Sbjct: 416 ttacaacaaccgaggaacct 435
>gb|AC025295.7|AC025295 Arabidopsis thaliana chromosome 1 BAC T4K22 genomic sequence, complete sequence Length = 82281 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 agttacaagttacaacaacc 167 |||||||||||||||||||| Sbjct: 37948 agttacaagttacaacaacc 37967
>dbj|AB039928.1| Arabidopsis thaliana mRNA for ERD4 protein, partial cds Length = 2099 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 agttacaagttacaacaacc 167 |||||||||||||||||||| Sbjct: 2062 agttacaagttacaacaacc 2043 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,861,863 Number of Sequences: 3902068 Number of extensions: 1861863 Number of successful extensions: 29659 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 29626 Number of HSP's gapped (non-prelim): 33 length of query: 283 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 261 effective length of database: 17,147,199,772 effective search space: 4475419140492 effective search space used: 4475419140492 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)