ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl29e06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC125116.4| Mus musculus BAC clone RP24-261C22 from chromosom... 46 0.060
2gb|AC124225.13| Mus musculus chromosome 16, clone RP23-83P23, co... 44 0.24
3gb|AC130607.2| Oryza sativa (japonica cultivar-group) chromosome... 42 0.93
4dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.93
5ref|NM_102773.2| Arabidopsis thaliana unknown protein AT1G30360 ... 40 3.7
6emb|Z81143.1|CEZK265 Caenorhabditis elegans Cosmid ZK265, comple... 40 3.7
7gb|AY035092.1| Arabidopsis thaliana unknown protein (At1g30360) ... 40 3.7
8emb|AL161552.2|ATCHRIV52 Arabidopsis thaliana DNA chromosome 4, ... 40 3.7
9emb|AL022224.1|ATF1C12 Arabidopsis thaliana DNA chromosome 4, BA... 40 3.7
10gb|AC012215.11| Homo sapiens chromosome , clone RP11-345N15, com... 40 3.7
11gb|AC083838.6| Homo sapiens chromosome 8, clone RP11-42L4, compl... 40 3.7
12dbj|AK221977.1| Arabidopsis thaliana mRNA for ERD4 protein, part... 40 3.7
13ref|NM_059848.3| Caenorhabditis elegans ZK265.7 (ZK265.7) mRNA, ... 40 3.7
14gb|AC025295.7|AC025295 Arabidopsis thaliana chromosome 1 BAC T4K... 40 3.7
15dbj|AB039928.1| Arabidopsis thaliana mRNA for ERD4 protein, part... 40 3.7

>gb|AC125116.4| Mus musculus BAC clone RP24-261C22 from chromosome 16, complete
             sequence
          Length = 180726

 Score = 46.1 bits (23), Expect = 0.060
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 134   ctcaaagaatccctagttacaagttacaaca 164
             |||||||| |||| |||||||||||||||||
Sbjct: 68524 ctcaaagattccccagttacaagttacaaca 68554



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>gb|AC124225.13| Mus musculus chromosome 16, clone RP23-83P23, complete sequence
          Length = 157891

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 169    aggaacctgcaagaatcaaatc 190
              ||||||||||||||||||||||
Sbjct: 103015 aggaacctgcaagaatcaaatc 103036



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>gb|AC130607.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0017D10,
             complete sequence
          Length = 149870

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 149   gttacaagttacaacaaccga 169
             |||||||||||||||||||||
Sbjct: 91915 gttacaagttacaacaaccga 91935



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 149      gttacaagttacaacaaccga 169
                |||||||||||||||||||||
Sbjct: 20093590 gttacaagttacaacaaccga 20093610



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>ref|NM_102773.2| Arabidopsis thaliana unknown protein AT1G30360 mRNA, complete cds
          Length = 2600

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 148  agttacaagttacaacaacc 167
            ||||||||||||||||||||
Sbjct: 2542 agttacaagttacaacaacc 2523



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>emb|Z81143.1|CEZK265 Caenorhabditis elegans Cosmid ZK265, complete sequence
          Length = 36069

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 157   ttacaacaaccgaggaacct 176
             ||||||||||||||||||||
Sbjct: 29767 ttacaacaaccgaggaacct 29786



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>gb|AY035092.1| Arabidopsis thaliana unknown protein (At1g30360) mRNA, complete cds
          Length = 2416

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 148  agttacaagttacaacaacc 167
            ||||||||||||||||||||
Sbjct: 2359 agttacaagttacaacaacc 2340



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>emb|AL161552.2|ATCHRIV52 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 52
          Length = 198427

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 148    agttacaagttacaacaacc 167
              ||||||||||||||||||||
Sbjct: 102694 agttacaagttacaacaacc 102713



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>emb|AL022224.1|ATF1C12 Arabidopsis thaliana DNA chromosome 4, BAC clone F1C12 (ESSA project)
          Length = 111945

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 148   agttacaagttacaacaacc 167
             ||||||||||||||||||||
Sbjct: 35271 agttacaagttacaacaacc 35290



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>gb|AC012215.11| Homo sapiens chromosome , clone RP11-345N15, complete sequence
          Length = 210723

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 52    acaatgacctgtgctactta 71
             ||||||||||||||||||||
Sbjct: 96067 acaatgacctgtgctactta 96048



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>gb|AC083838.6| Homo sapiens chromosome 8, clone RP11-42L4, complete sequence
          Length = 156623

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 52    acaatgacctgtgctactta 71
             ||||||||||||||||||||
Sbjct: 25421 acaatgacctgtgctactta 25402



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>dbj|AK221977.1| Arabidopsis thaliana mRNA for ERD4 protein, partial cds, clone:
           RAFL22-58-C09
          Length = 801

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 148 agttacaagttacaacaacc 167
           ||||||||||||||||||||
Sbjct: 752 agttacaagttacaacaacc 733



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>ref|NM_059848.3| Caenorhabditis elegans ZK265.7 (ZK265.7) mRNA, complete cds
          Length = 1386

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 157 ttacaacaaccgaggaacct 176
           ||||||||||||||||||||
Sbjct: 416 ttacaacaaccgaggaacct 435



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>gb|AC025295.7|AC025295 Arabidopsis thaliana chromosome 1 BAC T4K22 genomic sequence, complete
             sequence
          Length = 82281

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 148   agttacaagttacaacaacc 167
             ||||||||||||||||||||
Sbjct: 37948 agttacaagttacaacaacc 37967



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>dbj|AB039928.1| Arabidopsis thaliana mRNA for ERD4 protein, partial cds
          Length = 2099

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 148  agttacaagttacaacaacc 167
            ||||||||||||||||||||
Sbjct: 2062 agttacaagttacaacaacc 2043


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,861,863
Number of Sequences: 3902068
Number of extensions: 1861863
Number of successful extensions: 29659
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29626
Number of HSP's gapped (non-prelim): 33
length of query: 283
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 261
effective length of database: 17,147,199,772
effective search space: 4475419140492
effective search space used: 4475419140492
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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