ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbastl29e05 |
|---|---|
| Clone Library Name | barley_pub |
>AROA_SHISO (Q9ZFF7) 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19)| (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (EPSPS) Length = 427 Score = 29.6 bits (65), Expect = 3.9 Identities = 22/61 (36%), Positives = 29/61 (47%) Frame = -1 Query: 445 MPVLAADLLSYALGNSDHIEALRVYLLSRSISRLKNEFQTGNGKITVKCIEGYPPIDLQL 266 M LAA L LG++D + + R I L + + G KIT E YPP+ LQ Sbjct: 99 MRPLAAAL---CLGSNDIVLTGEPRMKERPIGHLVDALRLGGAKITYLEQENYPPLRLQG 155 Query: 265 G 263 G Sbjct: 156 G 156
>AROA_SHIDY (O87006) 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19)| (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (EPSPS) Length = 427 Score = 29.6 bits (65), Expect = 3.9 Identities = 22/61 (36%), Positives = 29/61 (47%) Frame = -1 Query: 445 MPVLAADLLSYALGNSDHIEALRVYLLSRSISRLKNEFQTGNGKITVKCIEGYPPIDLQL 266 M LAA L LG++D + + R I L + + G KIT E YPP+ LQ Sbjct: 99 MRPLAAAL---CLGSNDIVLTGEPRMKERPIGHLVDALRLGRAKITYLEQENYPPLRLQG 155 Query: 265 G 263 G Sbjct: 156 G 156
>AROA_ECOLI (P0A6D3) 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19)| (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (EPSPS) Length = 427 Score = 29.6 bits (65), Expect = 3.9 Identities = 22/61 (36%), Positives = 29/61 (47%) Frame = -1 Query: 445 MPVLAADLLSYALGNSDHIEALRVYLLSRSISRLKNEFQTGNGKITVKCIEGYPPIDLQL 266 M LAA L LG++D + + R I L + + G KIT E YPP+ LQ Sbjct: 99 MRPLAAAL---CLGSNDIVLTGEPRMKERPIGHLVDALRLGGAKITYLEQENYPPLRLQG 155 Query: 265 G 263 G Sbjct: 156 G 156
>AROA_ECOL6 (Q8FJB6) 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19)| (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (EPSPS) Length = 427 Score = 29.6 bits (65), Expect = 3.9 Identities = 22/61 (36%), Positives = 29/61 (47%) Frame = -1 Query: 445 MPVLAADLLSYALGNSDHIEALRVYLLSRSISRLKNEFQTGNGKITVKCIEGYPPIDLQL 266 M LAA L LG++D + + R I L + + G KIT E YPP+ LQ Sbjct: 99 MRPLAAAL---CLGSNDIVLTGEPRMKERPIGHLVDALRQGGAKITYLEQENYPPLRLQG 155 Query: 265 G 263 G Sbjct: 156 G 156
>AROA_ECO57 (P0A6D4) 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19)| (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (EPSPS) Length = 427 Score = 29.6 bits (65), Expect = 3.9 Identities = 22/61 (36%), Positives = 29/61 (47%) Frame = -1 Query: 445 MPVLAADLLSYALGNSDHIEALRVYLLSRSISRLKNEFQTGNGKITVKCIEGYPPIDLQL 266 M LAA L LG++D + + R I L + + G KIT E YPP+ LQ Sbjct: 99 MRPLAAAL---CLGSNDIVLTGEPRMKERPIGHLVDALRLGGAKITYLEQENYPPLRLQG 155 Query: 265 G 263 G Sbjct: 156 G 156
>RGA4_SCHPO (O74360) Probable Rho-type GTPase-activating protein 4| Length = 933 Score = 29.3 bits (64), Expect = 5.1 Identities = 13/48 (27%), Positives = 27/48 (56%) Frame = -1 Query: 199 STPVLSFSTAIHSNQADSVCTSQKQCIIYLDVLARMEGRWNCQVCIQR 56 STP+ F+ A+ ++QA+ C S + I + + +G+ C C+++ Sbjct: 86 STPICEFN-AVSNSQANHPCCSNCRAFINSNAFGKFKGQHYCLPCLRK 132
>ARE1_YEAST (P25628) Sterol O-acyltransferase 1 (EC 2.3.1.26) (Sterol-ester| synthase 1) Length = 610 Score = 28.5 bits (62), Expect = 8.7 Identities = 10/21 (47%), Positives = 16/21 (76%) Frame = -3 Query: 371 FVVKVHFQIEERIPDWKWQDY 309 FVV VH+ +++RI +WKW + Sbjct: 245 FVVFVHWLVKKRIINWKWTGF 265 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 67,072,930 Number of Sequences: 219361 Number of extensions: 1292522 Number of successful extensions: 2855 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 2795 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2855 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2968155324 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
