Clone Name | rbastl29e05 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK105391.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-122-H06, full insert sequence Length = 960 Score = 129 bits (65), Expect = 9e-27 Identities = 164/197 (83%) Strand = Plus / Minus Query: 210 aatcaagagcgattagcctggtaaaaatcgccagcgctaagaaaaacatgcttccctagc 269 |||||||| ||| ||||| |||| ||||| || | |||||||||||||| || || ||| Sbjct: 708 aatcaagaacgagtagccaggtagaaatctcctgtactaagaaaaacatgttttcccagc 649 Query: 270 tgcagatcaattgggggatagccttcgatgcactttaccgtaatcttgccatttccagtc 329 || ||||||||||| || ||||||| ||| | | ||||||||||||||||| |||| | Sbjct: 648 tggagatcaattggtgggaagccttcaatgaaatccaccgtaatcttgccattcccagcc 589 Query: 330 tggaattcgttcttcaatctggaaatggaccttgacaacaaatacactcttaacgcctca 389 |||||||| ||||||||||||||||| |||||||||| ||||| ||| |||| || ||| Sbjct: 588 tggaattcattcttcaatctggaaatagaccttgacagtaaatatacttttaatgcatca 529 Query: 390 atatggtcactgttgcc 406 | ||| |||| |||||| Sbjct: 528 aaatgctcacggttgcc 512
>dbj|AK101482.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033041F01, full insert sequence Length = 4632 Score = 129 bits (65), Expect = 9e-27 Identities = 164/197 (83%) Strand = Plus / Minus Query: 210 aatcaagagcgattagcctggtaaaaatcgccagcgctaagaaaaacatgcttccctagc 269 |||||||| ||| ||||| |||| ||||| || | |||||||||||||| || || ||| Sbjct: 4380 aatcaagaacgagtagccaggtagaaatctcctgtactaagaaaaacatgttttcccagc 4321 Query: 270 tgcagatcaattgggggatagccttcgatgcactttaccgtaatcttgccatttccagtc 329 || ||||||||||| || ||||||| ||| | | ||||||||||||||||| |||| | Sbjct: 4320 tggagatcaattggtgggaagccttcaatgaaatccaccgtaatcttgccattcccagcc 4261 Query: 330 tggaattcgttcttcaatctggaaatggaccttgacaacaaatacactcttaacgcctca 389 |||||||| ||||||||||||||||| |||||||||| ||||| ||| |||| || ||| Sbjct: 4260 tggaattcattcttcaatctggaaatagaccttgacagtaaatatacttttaatgcatca 4201 Query: 390 atatggtcactgttgcc 406 | ||| |||| |||||| Sbjct: 4200 aaatgctcacggttgcc 4184
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 83.8 bits (42), Expect = 5e-13 Identities = 81/94 (86%) Strand = Plus / Minus Query: 314 cttgccatttccagtctggaattcgttcttcaatctggaaatggaccttgacaacaaata 373 ||||||||| |||| ||||||||| ||||||||||||||||| |||||||||| ||||| Sbjct: 25961167 cttgccattcccagcctggaattcattcttcaatctggaaatagaccttgacagtaaata 25961108 Query: 374 cactcttaacgcctcaatatggtcactgttgcct 407 ||| |||| || |||| ||| |||| ||||||| Sbjct: 25961107 tacttttaatgcatcaaaatgctcacggttgcct 25961074 Score = 52.0 bits (26), Expect = 0.002 Identities = 62/74 (83%) Strand = Plus / Minus Query: 210 aatcaagagcgattagcctggtaaaaatcgccagcgctaagaaaaacatgcttccctagc 269 |||||||| ||| ||||| |||| ||||| || | |||||||||||||| || || ||| Sbjct: 25961346 aatcaagaacgagtagccaggtagaaatctcctgtactaagaaaaacatgttttcccagc 25961287 Query: 270 tgcagatcaattgg 283 || ||||||||||| Sbjct: 25961286 tggagatcaattgg 25961273 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 ctaagtaaatgatacattgc 128 |||||||||||||||||||| Sbjct: 11095326 ctaagtaaatgatacattgc 11095345
>dbj|AP003568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0017B12 Length = 157424 Score = 83.8 bits (42), Expect = 5e-13 Identities = 81/94 (86%) Strand = Plus / Minus Query: 314 cttgccatttccagtctggaattcgttcttcaatctggaaatggaccttgacaacaaata 373 ||||||||| |||| ||||||||| ||||||||||||||||| |||||||||| ||||| Sbjct: 116265 cttgccattcccagcctggaattcattcttcaatctggaaatagaccttgacagtaaata 116206 Query: 374 cactcttaacgcctcaatatggtcactgttgcct 407 ||| |||| || |||| ||| |||| ||||||| Sbjct: 116205 tacttttaatgcatcaaaatgctcacggttgcct 116172 Score = 52.0 bits (26), Expect = 0.002 Identities = 62/74 (83%) Strand = Plus / Minus Query: 210 aatcaagagcgattagcctggtaaaaatcgccagcgctaagaaaaacatgcttccctagc 269 |||||||| ||| ||||| |||| ||||| || | |||||||||||||| || || ||| Sbjct: 116444 aatcaagaacgagtagccaggtagaaatctcctgtactaagaaaaacatgttttcccagc 116385 Query: 270 tgcagatcaattgg 283 || ||||||||||| Sbjct: 116384 tggagatcaattgg 116371
>gb|AY109507.1| Zea mays CL553_1 mRNA sequence Length = 3145 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 285 ggatagccttcgatgcactttaccgtaatcttgccatttccagtctggaattcgttcttc 344 ||||| ||||||||||| | ||||||||| |||||||||| | ||||| | ||||||| Sbjct: 2953 ggataaccttcgatgcagtcgaccgtaatcacgccatttccactttggaactggttcttc 2894 Query: 345 aatctgga 352 |||||||| Sbjct: 2893 aatctgga 2886
>gb|AC147101.2| Mus musculus BAC clone RP23-455H16 from chromosome 12, complete sequence Length = 168258 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 86 cccttccatccttgccagcaca 107 |||||||||||||||||||||| Sbjct: 103392 cccttccatccttgccagcaca 103413
>gb|AC132582.3| Mus musculus BAC clone RP24-319N10 from chromosome 12, complete sequence Length = 159310 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 86 cccttccatccttgccagcaca 107 |||||||||||||||||||||| Sbjct: 134924 cccttccatccttgccagcaca 134945
>gb|AC150912.3| Pan troglodytes BAC clone CH251-18B3 from chromosome 7, complete sequence Length = 170021 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 gggagcacactgtaatagac 49 |||||||||||||||||||| Sbjct: 37435 gggagcacactgtaatagac 37454
>gb|AC162380.4| Pan troglodytes BAC clone CH251-629G18 from chromosome 7, complete sequence Length = 210978 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 gggagcacactgtaatagac 49 |||||||||||||||||||| Sbjct: 18431 gggagcacactgtaatagac 18412
>gb|AC119166.16| Mus musculus chromosome 1, clone RP24-393L8, complete sequence Length = 163121 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 84 ctcccttccatccttgccagcaca 107 |||| ||||||||||||||||||| Sbjct: 69242 ctcctttccatccttgccagcaca 69265
>gb|AC148932.3| Pan troglodytes BAC clone CH251-571G8 from chromosome 7, complete sequence Length = 232604 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 gggagcacactgtaatagac 49 |||||||||||||||||||| Sbjct: 178587 gggagcacactgtaatagac 178606
>gb|AY423588.1| Reticulitermes santonensis clone RS43 microsatellite sequence Length = 563 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 tgcttttgtgaggtacaaac 145 |||||||||||||||||||| Sbjct: 415 tgcttttgtgaggtacaaac 434
>gb|AC007683.5| Homo sapiens BAC clone RP11-401L13 from 7, complete sequence Length = 155735 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 gggagcacactgtaatagac 49 |||||||||||||||||||| Sbjct: 72616 gggagcacactgtaatagac 72597
>gb|AC126217.3| Rattus norvegicus 1 BAC CH230-9L4 (Children's Hospital Oakland Research Institute) complete sequence Length = 243051 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 85 tcccttccatccttgccagcacat 108 |||||||| ||||||||||||||| Sbjct: 21284 tcccttccttccttgccagcacat 21307
>gb|AC142337.1| Pan troglodytes BAC clone RP43-39F23 from 7, complete sequence Length = 157646 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 gggagcacactgtaatagac 49 |||||||||||||||||||| Sbjct: 110435 gggagcacactgtaatagac 110416
>gb|AC146865.11| Medicago truncatula clone mth2-36m14, complete sequence Length = 128493 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 260 cttccctagctgcagatcaa 279 |||||||||||||||||||| Sbjct: 23908 cttccctagctgcagatcaa 23927
>emb|AL596225.11| Human DNA sequence from clone RP11-30D7 on chromosome 1 Contains part of the gene for a novel protein (FLJ31862, FLJ22091, FLJ10597) and two CpG islands, complete sequence Length = 148750 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 tctcccttccatccttgcca 102 |||||||||||||||||||| Sbjct: 32989 tctcccttccatccttgcca 33008
>emb|AL358512.9| Human DNA sequence from clone RP11-102M16 on chromosome 1 Contains the 3' end of the gene for interleukin 12 receptor beta 2 (IL12RB2) and the 3' end of the gene for PAI-1 mRNA-binding protein (PAI-RBP1), complete sequence Length = 45562 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 151 cagcctgattagaatgaatt 170 |||||||||||||||||||| Sbjct: 35204 cagcctgattagaatgaatt 35223
>emb|AL031782.1|HS708F5 Human DNA sequence from clone RP4-708F5 on chromosome 6p11.2-12.3 Contains part of the COL21A1 gene for collagen, type XXI, alpha 1 (collagen XXI, collagen, type XX, alpha 1, COLA1L, COL20A1, DKFZp564B052), complete sequence Length = 126501 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 ctctgaatacacacttgaca 76 |||||||||||||||||||| Sbjct: 108971 ctctgaatacacacttgaca 108990
>gb|AC078880.27| Homo sapiens 12 BAC RP11-116D17 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 130824 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 catccttgccagcacatcta 111 |||||||||||||||||||| Sbjct: 40770 catccttgccagcacatcta 40789
>tpg|BK001791.1| TPA: TPA_inf: Bos taurus RTN2-C (RTN2) mRNA, complete cds Length = 1207 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 78 ttccatctcccttccatccttgcc 101 ||||||||||||||||||| |||| Sbjct: 744 ttccatctcccttccatccctgcc 767
>gb|AC105218.4| Homo sapiens chromosome 8, clone RP11-410F13, complete sequence Length = 138416 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 391 tatggtcactgttgcctaag 410 |||||||||||||||||||| Sbjct: 136973 tatggtcactgttgcctaag 136992
>gb|AF438327.1| Homo sapiens alpha 1 type XXI collagen precursor (COL21A1) gene, complete cds, alternatively spliced Length = 381696 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 ctctgaatacacacttgaca 76 |||||||||||||||||||| Sbjct: 168336 ctctgaatacacacttgaca 168317
>gb|AC161278.2| Pan troglodytes BAC clone CH251-486B7 from chromosome 7, complete sequence Length = 211383 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 gggagcacactgtaatagac 49 |||||||||||||||||||| Sbjct: 146439 gggagcacactgtaatagac 146458
>gb|AC148835.3| Pan troglodytes BAC clone CH251-25M11 from chromosome 7, complete sequence Length = 154596 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 gggagcacactgtaatagac 49 |||||||||||||||||||| Sbjct: 38100 gggagcacactgtaatagac 38119
>emb|CR383658.1| Human chromosome 14 DNA sequence BAC R-754I20 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 178323 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 tttgtgaggtacaaacagaa 149 |||||||||||||||||||| Sbjct: 36415 tttgtgaggtacaaacagaa 36396
>emb|CR383657.1| Human chromosome 14 DNA sequence BAC R-491G9 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 176745 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 tttgtgaggtacaaacagaa 149 |||||||||||||||||||| Sbjct: 154478 tttgtgaggtacaaacagaa 154459
>gb|AC022274.5|AC022274 Homo sapiens BAC clone RP11-697M17 from 8, complete sequence Length = 190701 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 391 tatggtcactgttgcctaag 410 |||||||||||||||||||| Sbjct: 164459 tatggtcactgttgcctaag 164440
>gb|AC016945.22| Homo sapiens 3 BAC RP11-31L6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 96001 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 338 gttcttcaatctggaaatgg 357 |||||||||||||||||||| Sbjct: 83530 gttcttcaatctggaaatgg 83511
>dbj|AP004007.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1217_C01 Length = 100180 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 ctaagtaaatgatacattgc 128 |||||||||||||||||||| Sbjct: 25232 ctaagtaaatgatacattgc 25251
>gb|AC006379.2|AC006379 Homo sapiens BAC clone RP11-456N16 from 7p15.1-p13, complete sequence Length = 202719 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 gggagcacactgtaatagac 49 |||||||||||||||||||| Sbjct: 2653 gggagcacactgtaatagac 2672
>ref|NM_182656.1| Bos taurus reticulon 2 (RTN2), mRNA Length = 1207 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 78 ttccatctcccttccatccttgcc 101 ||||||||||||||||||| |||| Sbjct: 744 ttccatctcccttccatccctgcc 767
>dbj|AB078046.1| Flexibacter canadensis gene for 16S rRNA, strain:IFO 15130 Length = 1475 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 tcaattgggggatagccttc 295 |||||||||||||||||||| Sbjct: 106 tcaattgggggatagccttc 125
>gb|AC005400.1|AC005400 Homo sapiens clone UWGC:g1564a310 from 7p14-15, complete sequence Length = 42393 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 gggagcacactgtaatagac 49 |||||||||||||||||||| Sbjct: 8071 gggagcacactgtaatagac 8090
>gb|AC160019.2| Gallus gallus BAC clone CH261-50H15 from chromosome unknown, complete sequence Length = 228494 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 364 acaacaaatacactcttaac 383 |||||||||||||||||||| Sbjct: 13655 acaacaaatacactcttaac 13636
>gb|AC158368.2| Gallus gallus BAC clone CH261-77E11 from chromosome unknown, complete sequence Length = 180657 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 364 acaacaaatacactcttaac 383 |||||||||||||||||||| Sbjct: 53253 acaacaaatacactcttaac 53272
>gb|M62793.1|FBCRRDA F.canadensis 16S ribosomal RNA Length = 1471 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 tcaattgggggatagccttc 295 |||||||||||||||||||| Sbjct: 136 tcaattgggggatagccttc 155
>dbj|AP000539.1| Homo sapiens genomic DNA, chromosome 22q11.2, Cat Eye Syndrome region, clone:c72E11 Length = 42207 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 tttgtgaggtacaaacagaa 149 |||||||||||||||||||| Sbjct: 19873 tttgtgaggtacaaacagaa 19854
>emb|AL591892.4| Mouse DNA sequence from clone RP23-422F22 on chromosome 15, complete sequence Length = 113798 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 109 ctaagtaaatgatacattgctttt 132 |||||||||||||||||| ||||| Sbjct: 91466 ctaagtaaatgatacattactttt 91489 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,145,654 Number of Sequences: 3902068 Number of extensions: 4145654 Number of successful extensions: 85677 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 85515 Number of HSP's gapped (non-prelim): 162 length of query: 463 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 441 effective length of database: 17,147,199,772 effective search space: 7561915099452 effective search space used: 7561915099452 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)