ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl29e03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY103745.1| Zea mays PCO097601 mRNA sequence 78 3e-11
2dbj|AK102187.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 1e-10
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 64 4e-07
4dbj|AP004027.3| Oryza sativa (japonica cultivar-group) genomic D... 64 4e-07
5gb|BT016893.1| Zea mays clone Contig726 mRNA sequence 62 2e-06
6ref|XM_467690.1| Oryza sativa (japonica cultivar-group), mRNA 60 7e-06
7gb|BT018372.1| Zea mays clone EL01N0306F02.d mRNA sequence 60 7e-06
8dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 60 7e-06
9dbj|AP005112.3| Oryza sativa (japonica cultivar-group) genomic D... 60 7e-06
10dbj|AK099699.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 7e-06
11emb|X01777.1|HVB3HORD Barley mRNA fragment for B3-hordein 42 1.6
12gb|AF016238.1|HVHORD2 Hordeum vulgare seed storage protein (HORD... 42 1.6
13gb|DQ267478.1| Hordeum vulgare subsp. vulgare clone Hn6 B hordei... 42 1.6
14gb|M23836.1|BLYHOR21A Hordeum vulgare hordein (hor2-1) mRNA, 3' UTR 42 1.6
15ref|NM_187920.1| Oryza sativa (japonica cultivar-group), predic... 40 6.3
16gb|CP000148.1| Geobacter metallireducens GS-15, complete genome 40 6.3
17gb|AY659938.1| Oryza sativa (japonica cultivar-group) RAA1 (RAA1... 40 6.3
18gb|AC161176.5| Mus musculus chromosome 5, clone RP24-295A5, comp... 40 6.3
19gb|AC125402.3| Mus musculus BAC clone RP24-539G2 from chromosome... 40 6.3
20gb|BC058201.1| Xenopus laevis hypothetical protein MGC68557, mRN... 40 6.3
21gb|BC041518.1| Xenopus laevis proteasome (prosome, macropain) su... 40 6.3
22emb|AL139810.16| Human DNA sequence from clone RP11-576G22 on ch... 40 6.3
23emb|AL136164.8| Human DNA sequence from clone RP3-331H24 on chro... 40 6.3
24emb|BX537343.8| Zebrafish DNA sequence from clone CH211-192A19 i... 40 6.3
25emb|BX323872.6| Zebrafish DNA sequence from clone RP71-25E6, com... 40 6.3
26gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome 40 6.3
27dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
28gb|AC020699.6| Homo sapiens BAC clone RP11-131K17 from 4, comple... 40 6.3
29gb|AC139931.5| Homo sapiens 12 BAC RP11-43A22 (Roswell Park Canc... 40 6.3
30dbj|AP002525.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
31gb|BC040858.1| Homo sapiens, clone IMAGE:5528391, mRNA 40 6.3
32dbj|AK070626.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.3
33dbj|AK058670.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.3
34gb|AC132435.3| Mus musculus BAC clone RP23-223L12 from 10, compl... 40 6.3

>gb|AY103745.1| Zea mays PCO097601 mRNA sequence
          Length = 1567

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 75/87 (86%)
 Strand = Plus / Minus

                                                                        
Query: 350  gaatcgaaggctgacctccagtcctcaccagggcggccgggtgtccgagggctctcagct 409
            ||||| ||||| ||||||||||||||||| | |||||  ||||| |||||||||||| ||
Sbjct: 1153 gaatcaaaggcagacctccagtcctcacctgagcggcttggtgttcgagggctctcaact 1094

                                       
Query: 410  tccggactgtcatttgaataagaggaa 436
            || |  |||||||| ||||||||||||
Sbjct: 1093 tcagtgctgtcattagaataagaggaa 1067



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 67/81 (82%)
 Strand = Plus / Minus

                                                                        
Query: 189  tcatggatactaatcagcacgactagtatctcggtggcgctggcggcaaccgatttggcg 248
            ||||| |||| ||||||||||| |||||| | || || ||||| |||||||| || || |
Sbjct: 1338 tcatgaataccaatcagcacgattagtattttggcggtgctggtggcaaccggttcggtg 1279

                                 
Query: 249  tgcgtcggctgctggagttgg 269
            |||| |||||||  |||||||
Sbjct: 1278 tgcgccggctgccagagttgg 1258



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 17   ctatatatttctataaacaactc 39
            |||||||||||||||||||||||
Sbjct: 1507 ctatatatttctataaacaactc 1485



 Score = 44.1 bits (22), Expect = 0.40
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 292  gcgactatcggcacttctcgaccttgattc 321
            ||||| ||| ||||||||||||||||||||
Sbjct: 1220 gcgaccatcagcacttctcgaccttgattc 1191



to top

>dbj|AK102187.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033086P03, full
            insert sequence
          Length = 3307

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 56/62 (90%)
 Strand = Plus / Minus

                                                                        
Query: 350  gaatcgaaggctgacctccagtcctcaccagggcggccgggtgtccgagggctctcagct 409
            ||||||||||| |||||||| |||||||| ||||||  ||||||||| ||||||||||||
Sbjct: 2795 gaatcgaaggcagacctccaatcctcacctgggcggttgggtgtccgggggctctcagct 2736

              
Query: 410  tc 411
            ||
Sbjct: 2735 tc 2734



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 34/36 (94%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                                
Query: 145  atcagaaacagagcgtg-tgcctagcaagaatacat 179
            ||||||||||| ||||| ||||||||||||||||||
Sbjct: 3023 atcagaaacagggcgtggtgcctagcaagaatacat 2988



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 62/75 (82%)
 Strand = Plus / Minus

                                                                        
Query: 195  atactaatcagcacgactagtatctcggtggcgctggcggcaaccgatttggcgtgcgtc 254
            ||||||||||||  || |||||| | || || ||||| || ||||| ||||| || ||||
Sbjct: 2965 atactaatcagcgtgattagtatttaggaggtgctggaggtaaccggtttggagtacgtc 2906

                           
Query: 255  ggctgctggagttgg 269
            |||||| ||||||||
Sbjct: 2905 ggctgccggagttgg 2891



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 20   tatatttctataaacaactc 39
            ||||||||||||||||||||
Sbjct: 3149 tatatttctataaacaactc 3130



to top

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                       
Query: 350     gaatcgaaggctgacctccagtcctcaccagggcggccgggtgtccgagggctctc 405
               ||||||||||| |||||||| |||||||| ||||||  ||||||||| ||||||||
Sbjct: 7680299 gaatcgaaggcagacctccaatcctcacctgggcggttgggtgtccgggggctctc 7680244



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 63/75 (84%)
 Strand = Plus / Minus

                                                                           
Query: 195     atactaatcagcacgactagtatctcggtggcgctggcggcaaccgatttggcgtgcgtc 254
               ||||||||||||  || |||||| | || || ||||| || ||||| ||||| |||||||
Sbjct: 7680469 atactaatcagcgtgattagtatttaggaggtgctggaggtaaccggtttggagtgcgtc 7680410

                              
Query: 255     ggctgctggagttgg 269
               |||||| ||||||||
Sbjct: 7680409 ggctgccggagttgg 7680395



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 34/36 (94%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                                   
Query: 145     atcagaaacagagcgtg-tgcctagcaagaatacat 179
               ||||||||||| ||||| ||||||||||||||||||
Sbjct: 7680527 atcagaaacagggcgtggtgcctagcaagaatacat 7680492



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 20      tatatttctataaacaactc 39
               ||||||||||||||||||||
Sbjct: 7680653 tatatttctataaacaactc 7680634



to top

>dbj|AP004027.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OJ1136_C11
          Length = 124827

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                      
Query: 350    gaatcgaaggctgacctccagtcctcaccagggcggccgggtgtccgagggctctc 405
              ||||||||||| |||||||| |||||||| ||||||  ||||||||| ||||||||
Sbjct: 103554 gaatcgaaggcagacctccaatcctcacctgggcggttgggtgtccgggggctctc 103499



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 63/75 (84%)
 Strand = Plus / Minus

                                                                          
Query: 195    atactaatcagcacgactagtatctcggtggcgctggcggcaaccgatttggcgtgcgtc 254
              ||||||||||||  || |||||| | || || ||||| || ||||| ||||| |||||||
Sbjct: 103724 atactaatcagcgtgattagtatttaggaggtgctggaggtaaccggtttggagtgcgtc 103665

                             
Query: 255    ggctgctggagttgg 269
              |||||| ||||||||
Sbjct: 103664 ggctgccggagttgg 103650



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 34/36 (94%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                                  
Query: 145    atcagaaacagagcgtg-tgcctagcaagaatacat 179
              ||||||||||| ||||| ||||||||||||||||||
Sbjct: 103782 atcagaaacagggcgtggtgcctagcaagaatacat 103747



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 20     tatatttctataaacaactc 39
              ||||||||||||||||||||
Sbjct: 103908 tatatttctataaacaactc 103889



to top

>gb|BT016893.1| Zea mays clone Contig726 mRNA sequence
          Length = 858

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 73/87 (83%)
 Strand = Plus / Plus

                                                                       
Query: 350 gaatcgaaggctgacctccagtcctcaccagggcggccgggtgtccgagggctctcagct 409
           ||||| || |||||||||||||||||||| | ||||   ||||| ||||||||||| |||
Sbjct: 375 gaatcaaaagctgacctccagtcctcacctgagcgggttggtgttcgagggctctcggct 434

                                      
Query: 410 tccggactgtcatttgaataagaggaa 436
           || |   ||||||| ||||||||||||
Sbjct: 435 tcagtggtgtcattagaataagaggaa 461



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 68/81 (83%)
 Strand = Plus / Plus

                                                                       
Query: 189 tcatggatactaatcagcacgactagtatctcggtggcgctggcggcaaccgatttggcg 248
           ||||| |||| ||||||||||| |||||| | || || ||||| |||||||| ||||| |
Sbjct: 190 tcatgaataccaatcagcacgattagtattttggcggtgctggtggcaaccggtttggtg 249

                                
Query: 249 tgcgtcggctgctggagttgg 269
           |||| |||||||  |||||||
Sbjct: 250 tgcgccggctgccagagttgg 270



to top

>ref|XM_467690.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3215

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                      
Query: 337  gccatttgctgcagaatcgaaggctgacctccagtcctcacc 378
            |||||||| |||||||||||| || |||||||||||||||||
Sbjct: 2700 gccatttgatgcagaatcgaacgcagacctccagtcctcacc 2659



to top

>gb|BT018372.1| Zea mays clone EL01N0306F02.d mRNA sequence
          Length = 1254

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                       
Query: 350 gaatcgaaggctgacctccagtcctcaccagggcggccgggtgtccgagggctctcagct 409
           ||||| ||||| ||||||||||||||||| | |||||  ||||| |||||||||||| ||
Sbjct: 916 gaatcaaaggcagacctccagtcctcacctgagcggcttggtgttcgagggctctcaact 857

             
Query: 410 tc 411
           ||
Sbjct: 856 tc 855



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 67/81 (82%)
 Strand = Plus / Minus

                                                                        
Query: 189  tcatggatactaatcagcacgactagtatctcggtggcgctggcggcaaccgatttggcg 248
            ||||| |||| ||||||||||| |||||| | || || ||||| |||||||| || || |
Sbjct: 1101 tcatgaataccaatcagcacgattagtattttggcggggctggtggcaaccggttcggtg 1042

                                 
Query: 249  tgcgtcggctgctggagttgg 269
            |||| |||||||  |||||||
Sbjct: 1041 tgcgccggctgccagagttgg 1021



 Score = 44.1 bits (22), Expect = 0.40
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 292 gcgactatcggcacttctcgaccttgattc 321
           ||||| ||| ||||||||||||||||||||
Sbjct: 983 gcgaccatcagcacttctcgaccttgattc 954



to top

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                          
Query: 337      gccatttgctgcagaatcgaaggctgacctccagtcctcacc 378
                |||||||| |||||||||||| || |||||||||||||||||
Sbjct: 30880683 gccatttgatgcagaatcgaacgcagacctccagtcctcacc 30880724



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 442      agctcgattgtcatggatactaag 465
                ||||| ||||||||||||||||||
Sbjct: 30881989 agctctattgtcatggatactaag 30882012



to top

>dbj|AP005112.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0684F11
          Length = 147731

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                       
Query: 337   gccatttgctgcagaatcgaaggctgacctccagtcctcacc 378
             |||||||| |||||||||||| || |||||||||||||||||
Sbjct: 64260 gccatttgatgcagaatcgaacgcagacctccagtcctcacc 64301



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 442   agctcgattgtcatggatactaag 465
             ||||| ||||||||||||||||||
Sbjct: 65566 agctctattgtcatggatactaag 65589



to top

>dbj|AK099699.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074K16, full
            insert sequence
          Length = 3215

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                      
Query: 337  gccatttgctgcagaatcgaaggctgacctccagtcctcacc 378
            |||||||| |||||||||||| || |||||||||||||||||
Sbjct: 2700 gccatttgatgcagaatcgaacgcagacctccagtcctcacc 2659



to top

>emb|X01777.1|HVB3HORD Barley mRNA fragment for B3-hordein
          Length = 954

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 9   tgattcaactatatatttcta 29
           |||||||||||||||||||||
Sbjct: 833 tgattcaactatatatttcta 813



to top

>gb|AF016238.1|HVHORD2 Hordeum vulgare seed storage protein (HORDB3a) mRNA 3' end
           sequence, partial cds
          Length = 231

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 9   tgattcaactatatatttcta 29
           |||||||||||||||||||||
Sbjct: 134 tgattcaactatatatttcta 114



to top

>gb|DQ267478.1| Hordeum vulgare subsp. vulgare clone Hn6 B hordein gene, complete cds
          Length = 1152

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 9    tgattcaactatatatttcta 29
            |||||||||||||||||||||
Sbjct: 1102 tgattcaactatatatttcta 1082



to top

>gb|M23836.1|BLYHOR21A Hordeum vulgare hordein (hor2-1) mRNA, 3' UTR
          Length = 165

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 9  tgattcaactatatatttcta 29
          |||||||||||||||||||||
Sbjct: 41 tgattcaactatatatttcta 21



to top

>ref|NM_187920.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 330

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 121 ctccaccaatctcaccaccc 140
           ||||||||||||||||||||
Sbjct: 48  ctccaccaatctcaccaccc 29



to top

>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 221     ggtggcgctggcggcaaccg 240
               ||||||||||||||||||||
Sbjct: 2802126 ggtggcgctggcggcaaccg 2802145



to top

>gb|AY659938.1| Oryza sativa (japonica cultivar-group) RAA1 (RAA1) mRNA, complete
           cds
          Length = 729

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 121 ctccaccaatctcaccaccc 140
           ||||||||||||||||||||
Sbjct: 100 ctccaccaatctcaccaccc 81



to top

>gb|AC161176.5| Mus musculus chromosome 5, clone RP24-295A5, complete sequence
          Length = 157001

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 4     agaattgattcaactatatatttc 27
             |||||||||||||||| |||||||
Sbjct: 41316 agaattgattcaactaaatatttc 41339



to top

>gb|AC125402.3| Mus musculus BAC clone RP24-539G2 from chromosome 5, complete sequence
          Length = 163773

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 4      agaattgattcaactatatatttc 27
              |||||||||||||||| |||||||
Sbjct: 151929 agaattgattcaactaaatatttc 151952



to top

>gb|BC058201.1| Xenopus laevis hypothetical protein MGC68557, mRNA (cDNA clone
           MGC:68557 IMAGE:4031378), complete cds
          Length = 971

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 48  tgcgcatgcatacacactgt 67
           ||||||||||||||||||||
Sbjct: 422 tgcgcatgcatacacactgt 441



to top

>gb|BC041518.1| Xenopus laevis proteasome (prosome, macropain) subunit, alpha type,
           3, mRNA (cDNA clone MGC:53724 IMAGE:4930219), complete
           cds
          Length = 974

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 48  tgcgcatgcatacacactgt 67
           ||||||||||||||||||||
Sbjct: 421 tgcgcatgcatacacactgt 440



to top

>emb|AL139810.16| Human DNA sequence from clone RP11-576G22 on chromosome Xp11.23-11.4
             Contains the 5' end of a novel gene, complete sequence
          Length = 27299

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 172   gaatacataataataaatca 191
             ||||||||||||||||||||
Sbjct: 26365 gaatacataataataaatca 26384



to top

>emb|AL136164.8| Human DNA sequence from clone RP3-331H24 on chromosome 6 Contains the
             5' end of a novel gene, the gene for a novel protein
             similar to opioid growth factor receptor and a CpG island,
             complete sequence
          Length = 108253

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 19    atatatttctataaacaactctgg 42
             |||||||||||||||| |||||||
Sbjct: 20311 atatatttctataaactactctgg 20334



to top

>emb|BX537343.8| Zebrafish DNA sequence from clone CH211-192A19 in linkage group 16,
             complete sequence
          Length = 59017

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    ttcaactatatatttctata 31
             ||||||||||||||||||||
Sbjct: 40475 ttcaactatatatttctata 40456



to top

>emb|BX323872.6| Zebrafish DNA sequence from clone RP71-25E6, complete sequence
          Length = 184178

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 12     ttcaactatatatttctata 31
              ||||||||||||||||||||
Sbjct: 181477 ttcaactatatatttctata 181496



to top

>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome
          Length = 3046682

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 328    cggggctgggccatttgctgcaga 351
              ||||||||||||| ||||||||||
Sbjct: 771205 cggggctgggccacttgctgcaga 771228



to top

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 121     ctccaccaatctcaccaccc 140
               ||||||||||||||||||||
Sbjct: 8585799 ctccaccaatctcaccaccc 8585818



to top

>gb|AC020699.6| Homo sapiens BAC clone RP11-131K17 from 4, complete sequence
          Length = 186961

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 173   aatacataataataaatcat 192
             ||||||||||||||||||||
Sbjct: 52428 aatacataataataaatcat 52447



to top

>gb|AC139931.5| Homo sapiens 12 BAC RP11-43A22 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 94635

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 173   aatacataataataaatcat 192
             ||||||||||||||||||||
Sbjct: 56035 aatacataataataaatcat 56054



to top

>dbj|AP002525.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0462H08
          Length = 139152

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 121   ctccaccaatctcaccaccc 140
             ||||||||||||||||||||
Sbjct: 17994 ctccaccaatctcaccaccc 18013



to top

>gb|BC040858.1| Homo sapiens, clone IMAGE:5528391, mRNA
          Length = 2228

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 172  gaatacataataataaatca 191
            ||||||||||||||||||||
Sbjct: 2170 gaatacataataataaatca 2189



to top

>dbj|AK070626.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056F13, full
           insert sequence
          Length = 786

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 121 ctccaccaatctcaccaccc 140
           ||||||||||||||||||||
Sbjct: 144 ctccaccaatctcaccaccc 125



to top

>dbj|AK058670.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-H02,
          full insert sequence
          Length = 239

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 20 tatatttctataaacaactc 39
          ||||||||||||||||||||
Sbjct: 78 tatatttctataaacaactc 59



to top

>gb|AC132435.3| Mus musculus BAC clone RP23-223L12 from 10, complete sequence
          Length = 198383

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 430    agaggaagcagcagctcgattgtcatgg 457
              |||||||||||||||| || ||||||||
Sbjct: 113406 agaggaagcagcagctggaatgtcatgg 113433


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,023,632
Number of Sequences: 3902068
Number of extensions: 4023632
Number of successful extensions: 80724
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80509
Number of HSP's gapped (non-prelim): 215
length of query: 468
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 446
effective length of database: 17,147,199,772
effective search space: 7647651098312
effective search space used: 7647651098312
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top