ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl29e02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL032654.1|CEY52B11A Caenorhabditis elegans YAC Y52B11A, com... 42 1.5
2gb|AC169375.4| Sorghum bicolor clone SB_BBc0020O07, complete seq... 42 1.5
3emb|AL732501.8| Mouse DNA sequence from clone RP23-325I22 on chr... 42 1.5
4gb|AC155298.2| Mus musculus BAC clone RP24-245L7 from chromosome... 40 5.8
5gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.8
6gb|AC135800.24| Medicago truncatula clone mth2-14g8, complete se... 40 5.8
7gb|AC117511.10| Homo sapiens 12 BAC RP11-545I15 (Roswell Park Ca... 40 5.8
8emb|BX324166.8| Zebrafish DNA sequence from clone DKEY-66A8 in l... 40 5.8
9ref|NM_205363.1| Gallus gallus tectorin beta (TECTB), mRNA 40 5.8
10gb|AC157757.24| Medicago truncatula clone mth2-16j22, complete s... 40 5.8
11gb|AC083942.8| Genomic sequence for Oryza sativa, Nipponbare str... 40 5.8
12gb|AC154725.3| Mus musculus BAC clone RP23-125L8 from chromosome... 40 5.8
13dbj|AK048614.1| Mus musculus 16 days embryo head cDNA, RIKEN ful... 40 5.8
14dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
15emb|Z81124.1|CET21B4 Caenorhabditis elegans Cosmid T21B4, comple... 40 5.8
16emb|AL109759.4|CNS018OW Human chromosome 14 DNA sequence BAC R-8... 40 5.8
17gb|AF212491.1| Gibberella zeae strain NRRL 28721 phosphate perme... 40 5.8
18gb|AF212490.1| Gibberella zeae strain NRRL 28720 phosphate perme... 40 5.8
19gb|AF212487.1| Gibberella zeae strain NRRL 6101 phosphate permea... 40 5.8
20emb|AL935178.12| Zebrafish DNA sequence from clone CH211-180B9 i... 40 5.8
21emb|CT009733.13| Mouse DNA sequence from clone RP23-157D19 on ch... 40 5.8
22gb|L38519.1|CHKTCTORIN Gallus gallus beta-tectorin protein mRNA,... 40 5.8

>emb|AL032654.1|CEY52B11A Caenorhabditis elegans YAC Y52B11A, complete sequence
          Length = 106949

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 244   ataagctacaaactacaaagt 264
             |||||||||||||||||||||
Sbjct: 54078 ataagctacaaactacaaagt 54098



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>gb|AC169375.4| Sorghum bicolor clone SB_BBc0020O07, complete sequence
          Length = 117931

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 12    ttttcctttgcttattgttaagaga 36
             ||||||||||||||||||| |||||
Sbjct: 69981 ttttcctttgcttattgttgagaga 70005



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>emb|AL732501.8| Mouse DNA sequence from clone RP23-325I22 on chromosome X, complete
             sequence
          Length = 206856

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 11    cttttcctttgcttattgtta 31
             |||||||||||||||||||||
Sbjct: 47723 cttttcctttgcttattgtta 47703



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>gb|AC155298.2| Mus musculus BAC clone RP24-245L7 from chromosome 13, complete sequence
          Length = 178609

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 194   tacaaagccatatatacaaa 213
             ||||||||||||||||||||
Sbjct: 14017 tacaaagccatatatacaaa 14036



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                               
Query: 332     gatttctgcatcaatgttaggccctcaaacatcaccaaggggtgtgcc 379
               |||||||||| |||  |||||  | |||||||||||||||| ||||||
Sbjct: 9460581 gatttctgcaccaagcttaggttcgcaaacatcaccaagggatgtgcc 9460534



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>gb|AC135800.24| Medicago truncatula clone mth2-14g8, complete sequence
          Length = 125467

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    ttttcctttgcttattgtta 31
             ||||||||||||||||||||
Sbjct: 80775 ttttcctttgcttattgtta 80794



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>gb|AC117511.10| Homo sapiens 12 BAC RP11-545I15 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 68568

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 345  atgttaggccctcaaacatc 364
            ||||||||||||||||||||
Sbjct: 4687 atgttaggccctcaaacatc 4706



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>emb|BX324166.8| Zebrafish DNA sequence from clone DKEY-66A8 in linkage group 6, complete
              sequence
          Length = 215450

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 12     ttttcctttgcttattgtta 31
              ||||||||||||||||||||
Sbjct: 162735 ttttcctttgcttattgtta 162716



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>ref|NM_205363.1| Gallus gallus tectorin beta (TECTB), mRNA
          Length = 1230

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 362 atcaccaaggggtgtgcctc 381
           ||||||||||||||||||||
Sbjct: 737 atcaccaaggggtgtgcctc 756



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>gb|AC157757.24| Medicago truncatula clone mth2-16j22, complete sequence
          Length = 139728

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    ttttcctttgcttattgtta 31
             ||||||||||||||||||||
Sbjct: 58881 ttttcctttgcttattgtta 58862



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>gb|AC083942.8| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0002D01, from chromosome 3, complete sequence
          Length = 187589

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                              
Query: 332    gatttctgcatcaatgttaggccctcaaacatcaccaaggggtgtgcc 379
              |||||||||| |||  |||||  | |||||||||||||||| ||||||
Sbjct: 157981 gatttctgcaccaagcttaggttcgcaaacatcaccaagggatgtgcc 157934



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>gb|AC154725.3| Mus musculus BAC clone RP23-125L8 from chromosome 13, complete sequence
          Length = 204262

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 37     ctcaaagagctcaagatttt 56
              ||||||||||||||||||||
Sbjct: 163526 ctcaaagagctcaagatttt 163507



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>dbj|AK048614.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched
            library, clone:C130087L13 product:unclassifiable, full
            insert sequence
          Length = 2682

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 37   ctcaaagagctcaagatttt 56
            ||||||||||||||||||||
Sbjct: 1629 ctcaaagagctcaagatttt 1648



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                               
Query: 332     gatttctgcatcaatgttaggccctcaaacatcaccaaggggtgtgcc 379
               |||||||||| |||  |||||  | |||||||||||||||| ||||||
Sbjct: 9458702 gatttctgcaccaagcttaggttcgcaaacatcaccaagggatgtgcc 9458655



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>emb|Z81124.1|CET21B4 Caenorhabditis elegans Cosmid T21B4, complete sequence
          Length = 37797

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 244   ataagctacaaactacaaag 263
             ||||||||||||||||||||
Sbjct: 36970 ataagctacaaactacaaag 36951



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>emb|AL109759.4|CNS018OW Human chromosome 14 DNA sequence BAC R-898B23 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 201794

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 11     cttttcctttgcttattgtt 30
              ||||||||||||||||||||
Sbjct: 142657 cttttcctttgcttattgtt 142638



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>gb|AF212491.1| Gibberella zeae strain NRRL 28721 phosphate permease gene, partial
           cds
          Length = 552

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 113 atctatctaactgacttcac 132
           ||||||||||||||||||||
Sbjct: 377 atctatctaactgacttcac 396



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>gb|AF212490.1| Gibberella zeae strain NRRL 28720 phosphate permease gene, partial
           cds
          Length = 552

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 113 atctatctaactgacttcac 132
           ||||||||||||||||||||
Sbjct: 377 atctatctaactgacttcac 396



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>gb|AF212487.1| Gibberella zeae strain NRRL 6101 phosphate permease gene, partial
           cds
          Length = 552

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 113 atctatctaactgacttcac 132
           ||||||||||||||||||||
Sbjct: 377 atctatctaactgacttcac 396



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>emb|AL935178.12| Zebrafish DNA sequence from clone CH211-180B9 in linkage group 22,
             complete sequence
          Length = 144027

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 194   tacaaagccatatatacaaa 213
             ||||||||||||||||||||
Sbjct: 28723 tacaaagccatatatacaaa 28704



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>emb|CT009733.13| Mouse DNA sequence from clone RP23-157D19 on chromosome 13, complete
             sequence
          Length = 192464

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 37    ctcaaagagctcaagatttt 56
             ||||||||||||||||||||
Sbjct: 59962 ctcaaagagctcaagatttt 59943



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>gb|L38519.1|CHKTCTORIN Gallus gallus beta-tectorin protein mRNA, complete cds
          Length = 1230

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 362 atcaccaaggggtgtgcctc 381
           ||||||||||||||||||||
Sbjct: 737 atcaccaaggggtgtgcctc 756


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,392,129
Number of Sequences: 3902068
Number of extensions: 3392129
Number of successful extensions: 70909
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70623
Number of HSP's gapped (non-prelim): 286
length of query: 435
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 413
effective length of database: 17,147,199,772
effective search space: 7081793505836
effective search space used: 7081793505836
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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