ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl29e01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SND1_MOUSE (Q78PY7) Staphylococcal nuclease domain-containing pr... 36 0.061
2SND1_HUMAN (Q7KZF4) Staphylococcal nuclease domain-containing pr... 36 0.061
3SND1_BOVIN (Q863B3) Staphylococcal nuclease domain-containing pr... 36 0.061
4SND1_RAT (Q66X93) Staphylococcal nuclease domain-containing prot... 36 0.061
5NUC_STAAU (P00644) Thermonuclease precursor (EC 3.1.31.1) (TNase... 31 1.5
6SMC2_YEAST (P38989) Structural maintenance of chromosome 2 (DA-b... 30 2.6
7EGFL8_MOUSE (Q6GUQ1) EGF-like domain-containing protein 8 precur... 30 2.6
8NADB2_RALSO (Q8XQG4) L-aspartate oxidase 2 (EC 1.4.3.16) (LASPO ... 30 2.6
9DDX46_BRARE (Q4TVV3) Probable ATP-dependent RNA helicase DDX46 (... 30 2.6
10Y1137_PYRHO (O58864) Hypothetical RNA methyltransferase PH1137 (... 30 3.3
11DDX46_RAT (Q62780) Probable ATP-dependent RNA helicase DDX46 (EC... 30 4.4
12DDX46_PONPY (Q5R6D8) Probable ATP-dependent RNA helicase DDX46 (... 30 4.4
13DDX46_MOUSE (Q569Z5) Probable ATP-dependent RNA helicase DDX46 (... 30 4.4
14DDX46_HUMAN (Q7L014) Probable ATP-dependent RNA helicase DDX46 (... 30 4.4
15Y1078_PYRAB (Q9UZR7) Hypothetical RNA methyltransferase PYRAB107... 30 4.4
16CBF5_YEAST (P33322) H/ACA ribonucleoprotein complex subunit 4 (E... 30 4.4
17URED_SYNY3 (P73047) Urease accessory protein ureD 30 4.4
18NUC_STAAW (Q8NXI6) Thermonuclease precursor (EC 3.1.31.1) (TNase... 30 4.4
19NUC_STAAS (Q6GB41) Thermonuclease precursor (EC 3.1.31.1) (TNase... 30 4.4
20NUC_STAAR (Q6GIK1) Thermonuclease precursor (EC 3.1.31.1) (TNase... 30 4.4
21NUC_STAAN (Q7A6P2) Thermonuclease precursor (EC 3.1.31.1) (TNase... 30 4.4
22NUC_STAAM (Q99VJ0) Thermonuclease precursor (EC 3.1.31.1) (TNase... 30 4.4
23NUC_STAAC (Q5HHM4) Thermonuclease precursor (EC 3.1.31.1) (TNase... 30 4.4
24MTA70_DROME (Q9VCE6) Probable N6-adenosine-methyltransferase MT-... 29 7.5
25SYK2_MYCTU (P94974) Putative lysyl-tRNA synthetase 2 (EC 6.1.1.6... 28 9.7
26SYK2_MYCBO (Q7VEV7) Putative lysyl-tRNA synthetase 2 (EC 6.1.1.6... 28 9.7
27DYN1_MOUSE (P39053) Dynamin-1 (EC 3.6.5.5) 28 9.7
28DYN1_HUMAN (Q05193) Dynamin-1 (EC 3.6.5.5) 28 9.7
29DYN1_RAT (P21575) Dynamin-1 (EC 3.6.5.5) (D100) (Dynamin, brain)... 28 9.7

>SND1_MOUSE (Q78PY7) Staphylococcal nuclease domain-containing protein 1 (p100|
            co-activator) (100 kDa coactivator)
          Length = 910

 Score = 35.8 bits (81), Expect = 0.061
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = -1

Query: 483  TESSINAAMLEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVESD 310
            ++  +   +++EGL  +E  K    K+ +  +      QE AK  RL LW+YGD  +D
Sbjct: 847  SKGDVGLGLVKEGLVMVEVRKE---KQFQKVITEYLNAQESAKSARLNLWRYGDFRAD 901



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>SND1_HUMAN (Q7KZF4) Staphylococcal nuclease domain-containing protein 1 (p100|
            co-activator) (100 kDa coactivator) (EBNA2 coactivator
            p100)
          Length = 910

 Score = 35.8 bits (81), Expect = 0.061
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = -1

Query: 483  TESSINAAMLEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVESD 310
            ++  +   +++EGL  +E  K    K+ +  +      QE AK  RL LW+YGD  +D
Sbjct: 847  SKGDVGLGLVKEGLVMVEVRKE---KQFQKVITEYLNAQESAKSARLNLWRYGDFRAD 901



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>SND1_BOVIN (Q863B3) Staphylococcal nuclease domain-containing protein 1 (p100|
            co-activator) (100 kDa coactivator)
          Length = 910

 Score = 35.8 bits (81), Expect = 0.061
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = -1

Query: 483  TESSINAAMLEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVESD 310
            ++  +   +++EGL  +E  K    K+ +  +      QE AK  RL LW+YGD  +D
Sbjct: 847  SKGDVGLGLVKEGLVMVEVRKE---KQFQKVITEYLNAQESAKSARLNLWRYGDFRAD 901



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>SND1_RAT (Q66X93) Staphylococcal nuclease domain-containing protein 1 (p100|
            co-activator) (100 kDa coactivator) (SND p102) (p105
            coactivator)
          Length = 909

 Score = 35.8 bits (81), Expect = 0.061
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = -1

Query: 483  TESSINAAMLEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVESD 310
            ++  +   +++EGL  +E  K    K+ +  +      QE AK  RL LW+YGD  +D
Sbjct: 846  SKGDVGLGLVKEGLVMVEVRKE---KQFQKVITEYLNAQESAKSARLNLWRYGDFRAD 900



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>NUC_STAAU (P00644) Thermonuclease precursor (EC 3.1.31.1) (TNase)|
           (Micrococcal nuclease) (Staphylococcal nuclease)
           [Contains: Nuclease B; Nuclease A]
          Length = 231

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 15/53 (28%), Positives = 31/53 (58%)
 Frame = -1

Query: 471 INAAMLEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVES 313
           +N A++ +GLA++     +  K   T  ++L + + +AKKE+L +W   + +S
Sbjct: 181 VNEALVRQGLAKVA----YVYKPNNTHEQHLRKSEAQAKKEKLNIWSEDNADS 229



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>SMC2_YEAST (P38989) Structural maintenance of chromosome 2 (DA-box protein|
           SMC2)
          Length = 1170

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 16/52 (30%), Positives = 31/52 (59%)
 Frame = -1

Query: 480 ESSINAAMLEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYG 325
           +SS+   +L++ L  +E   +  TK+ +  +++++Q QE   K R RL +YG
Sbjct: 419 KSSMKMELLKKELLTIEPKLKEATKDNELNVKHVKQCQETCDKLRARLVEYG 470



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>EGFL8_MOUSE (Q6GUQ1) EGF-like domain-containing protein 8 precursor (Epidermal|
           growth factor-like protein 8) (Multiple EGF-like domain
           protein 8)
          Length = 293

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -1

Query: 483 TESSINAAMLEEGLARLERGKRWDTKERKTALENLEQFQEKA 358
           T +SI +  + E  +  ER  RW+  E +  LE LEQ+ ++A
Sbjct: 192 TSASILSVAVREADSEEERALRWEVAELRGRLEKLEQWAKQA 233



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>NADB2_RALSO (Q8XQG4) L-aspartate oxidase 2 (EC 1.4.3.16) (LASPO 2) (Quinolinate|
           synthetase B 2)
          Length = 536

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +3

Query: 249 CLLSSTDAAGVSSRLELALPRRIQ 320
           C  S TD AG +SRL L LP RI+
Sbjct: 396 CAQSVTDTAGSASRLRLTLPERIE 419



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>DDX46_BRARE (Q4TVV3) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)|
           (DEAD box protein 46)
          Length = 1018

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 14/49 (28%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
 Frame = -1

Query: 453 EEGLARLERGKRWDTKERKTALENLEQFQEKAKK-ERLRLWQYGDVESD 310
           EE   R ER ++W  ++RKTA+EN+ + +++ ++ ++ + W   D + +
Sbjct: 126 EEMRKRKERVEKWREEQRKTAMENIGEIKKELEEMKQGKKWSLEDDDEE 174



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>Y1137_PYRHO (O58864) Hypothetical RNA methyltransferase PH1137 (EC 2.1.1.-)|
          Length = 407

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 7/53 (13%)
 Frame = -1

Query: 471 INAAMLEEGLARLERGKRW---DTKE----RKTALENLEQFQEKAKKERLRLW 334
           I+ A+  EG+   ERGK W   D +E     KT+ + +E+ +E  ++ER+ +W
Sbjct: 111 IDLAVTVEGIGFRERGKWWKIVDIQECPVFGKTSRKAIERLREFIEEERISVW 163



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>DDX46_RAT (Q62780) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)|
           (DEAD box protein 46) (Helicase of 117.4 kDa)
          Length = 1032

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = -1

Query: 453 EEGLARLERGKRWDTKERKTALENLEQFQEKAKK-ERLRLWQYGDVESD 310
           EE   R ER ++W  ++RK A+EN+ + +++ ++ ++ + W   D + D
Sbjct: 158 EEMRKRKERVEKWREEQRKKAMENIGELKKEIEEMKQGKKWSLEDDDDD 206



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>DDX46_PONPY (Q5R6D8) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)|
           (DEAD box protein 46)
          Length = 1032

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = -1

Query: 453 EEGLARLERGKRWDTKERKTALENLEQFQEKAKK-ERLRLWQYGDVESD 310
           EE   R ER ++W  ++RK A+EN+ + +++ ++ ++ + W   D + D
Sbjct: 158 EEMRKRKERVEKWREEQRKKAMENIGELKKEIEEMKQGKKWSLEDDDDD 206



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>DDX46_MOUSE (Q569Z5) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)|
           (DEAD box protein 46)
          Length = 1032

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = -1

Query: 453 EEGLARLERGKRWDTKERKTALENLEQFQEKAKK-ERLRLWQYGDVESD 310
           EE   R ER ++W  ++RK A+EN+ + +++ ++ ++ + W   D + D
Sbjct: 158 EEMRKRKERVEKWREEQRKKAMENIGELKKEIEEMKQGKKWSLEDDDDD 206



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>DDX46_HUMAN (Q7L014) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)|
           (DEAD box protein 46) (PRP5 homolog)
          Length = 1032

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = -1

Query: 453 EEGLARLERGKRWDTKERKTALENLEQFQEKAKK-ERLRLWQYGDVESD 310
           EE   R ER ++W  ++RK A+EN+ + +++ ++ ++ + W   D + D
Sbjct: 158 EEMRKRKERVEKWREEQRKKAMENIGELKKEIEEMKQGKKWSLEDDDDD 206



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>Y1078_PYRAB (Q9UZR7) Hypothetical RNA methyltransferase PYRAB10780 (EC 2.1.1.-)|
          Length = 405

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 7/53 (13%)
 Frame = -1

Query: 471 INAAMLEEGLARLERGKRWDTKE-------RKTALENLEQFQEKAKKERLRLW 334
           I+ A+ ++G+   ERGK W   +        KT+ E +E+ +E  ++E++ +W
Sbjct: 111 IDLAITKDGIGFRERGKWWKIVDIDECPVFGKTSREAIERLKEFIEEEKISVW 163



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>CBF5_YEAST (P33322) H/ACA ribonucleoprotein complex subunit 4 (EC 5.4.99.-)|
           (Centromere/microtubule-binding protein CBF5)
           (Centromere-binding factor 5) (Small nucleolar RNP
           protein CBF5) (H/ACA snoRNP protein CBF5) (p64')
          Length = 483

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 15/47 (31%), Positives = 29/47 (61%)
 Frame = -1

Query: 456 LEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVE 316
           ++E  ++ E+ ++ D KE+K   E  ++ ++K KKE+ R  + GD E
Sbjct: 428 VKEDDSKKEKKEKKDKKEKKEKKEKKDKKEKKEKKEKKRKSEDGDSE 474



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>URED_SYNY3 (P73047) Urease accessory protein ureD|
          Length = 270

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -3

Query: 274 AASVDERRQWHAQSWFRYESFGHRAKLSRELI*KLSKKERLY 149
           A++V+    W A  W RY+  GHR ++   L+    K +R +
Sbjct: 4   ASTVNPSAPWQANLWLRYDRPGHRTRMVECLVQAPLKVQRSF 45



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>NUC_STAAW (Q8NXI6) Thermonuclease precursor (EC 3.1.31.1) (TNase)|
           (Micrococcal nuclease) (Staphylococcal nuclease)
          Length = 228

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 15/53 (28%), Positives = 30/53 (56%)
 Frame = -1

Query: 471 INAAMLEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVES 313
           +N A++ +GLA++     +  K   T  + L + + +AKKE+L +W   + +S
Sbjct: 178 VNEALVRQGLAKVA----YVYKPNNTHEQLLRKSEAQAKKEKLNIWSEDNADS 226



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>NUC_STAAS (Q6GB41) Thermonuclease precursor (EC 3.1.31.1) (TNase)|
           (Micrococcal nuclease) (Staphylococcal nuclease)
          Length = 228

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 15/53 (28%), Positives = 30/53 (56%)
 Frame = -1

Query: 471 INAAMLEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVES 313
           +N A++ +GLA++     +  K   T  + L + + +AKKE+L +W   + +S
Sbjct: 178 VNEALVRQGLAKVA----YVYKPNNTHEQLLRKSEAQAKKEKLNIWSEDNADS 226



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>NUC_STAAR (Q6GIK1) Thermonuclease precursor (EC 3.1.31.1) (TNase)|
           (Micrococcal nuclease) (Staphylococcal nuclease)
          Length = 228

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 15/53 (28%), Positives = 30/53 (56%)
 Frame = -1

Query: 471 INAAMLEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVES 313
           +N A++ +GLA++     +  K   T  + L + + +AKKE+L +W   + +S
Sbjct: 178 VNEALVRQGLAKVA----YVYKPNNTHEQLLRKSEAQAKKEKLNIWSEDNADS 226



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>NUC_STAAN (Q7A6P2) Thermonuclease precursor (EC 3.1.31.1) (TNase)|
           (Micrococcal nuclease) (Staphylococcal nuclease)
          Length = 228

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 15/53 (28%), Positives = 30/53 (56%)
 Frame = -1

Query: 471 INAAMLEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVES 313
           +N A++ +GLA++     +  K   T  + L + + +AKKE+L +W   + +S
Sbjct: 178 VNEALVRQGLAKVA----YVYKPNNTHEQLLRKSEAQAKKEKLNIWSEDNADS 226



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>NUC_STAAM (Q99VJ0) Thermonuclease precursor (EC 3.1.31.1) (TNase)|
           (Micrococcal nuclease) (Staphylococcal nuclease)
          Length = 228

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 15/53 (28%), Positives = 30/53 (56%)
 Frame = -1

Query: 471 INAAMLEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVES 313
           +N A++ +GLA++     +  K   T  + L + + +AKKE+L +W   + +S
Sbjct: 178 VNEALVRQGLAKVA----YVYKPNNTHEQLLRKSEAQAKKEKLNIWSEDNADS 226



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>NUC_STAAC (Q5HHM4) Thermonuclease precursor (EC 3.1.31.1) (TNase)|
           (Micrococcal nuclease) (Staphylococcal nuclease)
          Length = 228

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 15/53 (28%), Positives = 30/53 (56%)
 Frame = -1

Query: 471 INAAMLEEGLARLERGKRWDTKERKTALENLEQFQEKAKKERLRLWQYGDVES 313
           +N A++ +GLA++     +  K   T  + L + + +AKKE+L +W   + +S
Sbjct: 178 VNEALVRQGLAKVA----YVYKPNNTHEQLLRKSEAQAKKEKLNIWSEDNADS 226



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>MTA70_DROME (Q9VCE6) Probable N6-adenosine-methyltransferase MT-A70-like|
           protein (EC 2.1.1.62)
          Length = 608

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 417 WDTKERKTALENLEQFQEKAKKERLRLWQYGDVESD 310
           WD K  KT    L +  EK KKER+ +    D++ D
Sbjct: 5   WDIKSLKTKRNTLREKLEKRKKERIEI--LSDIQED 38



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>SYK2_MYCTU (P94974) Putative lysyl-tRNA synthetase 2 (EC 6.1.1.6)|
           (Lysine--tRNA ligase 2) (LysRS 2)
          Length = 1172

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +2

Query: 47  VLPLQRRNAVHKGHRP 94
           VLP  RRN VH GH P
Sbjct: 628 VLPFSRRNRVHTGHHP 643



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>SYK2_MYCBO (Q7VEV7) Putative lysyl-tRNA synthetase 2 (EC 6.1.1.6)|
           (Lysine--tRNA ligase 2) (LysRS 2)
          Length = 1172

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +2

Query: 47  VLPLQRRNAVHKGHRP 94
           VLP  RRN VH GH P
Sbjct: 628 VLPFSRRNRVHTGHHP 643



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>DYN1_MOUSE (P39053) Dynamin-1 (EC 3.6.5.5)|
          Length = 867

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -2

Query: 341 ACGSMETLNPTRKSELQAGGDPRRVGRREKA 249
           AC + E ++  + S L+AG  P RVG +EKA
Sbjct: 606 ACETQEEVDSWKASFLRAGVYPERVGDKEKA 636



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>DYN1_HUMAN (Q05193) Dynamin-1 (EC 3.6.5.5)|
          Length = 864

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -2

Query: 341 ACGSMETLNPTRKSELQAGGDPRRVGRREKA 249
           AC + E ++  + S L+AG  P RVG +EKA
Sbjct: 606 ACETQEEVDSWKASFLRAGVYPERVGDKEKA 636



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>DYN1_RAT (P21575) Dynamin-1 (EC 3.6.5.5) (D100) (Dynamin, brain) (B-dynamin)|
          Length = 851

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -2

Query: 341 ACGSMETLNPTRKSELQAGGDPRRVGRREKA 249
           AC + E ++  + S L+AG  P RVG +EKA
Sbjct: 606 ACETQEEVDSWKASFLRAGVYPERVGDKEKA 636


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,865,205
Number of Sequences: 219361
Number of extensions: 949237
Number of successful extensions: 3254
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 3144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3250
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3304846491
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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