ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl29e01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_466019.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3549 Score = 192 bits (97), Expect = 7e-46 Identities = 169/193 (87%) Strand = Plus / Minus Query: 291 ctggagctcgctcttcctcgtcggattcaacgtctccatactgccacaggcgcagccttt 350 |||||||| ||||||||||||| |||||||| || ||||||||||| | ||||||||| Sbjct: 3153 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 3094 Query: 351 ccttcttcgccttctcctggaactgttccaggttctcgagagctgtcttcctctcctttg 410 ||||||| || |||||||||||||||||||| |||| |||||| | ||| |||||| | | Sbjct: 3093 ccttctttgctttctcctggaactgttccagattctggagagcagcctttctctccctag 3034 Query: 411 tgtcccatctcttgcccctttcaagtcgggcaagcccttcctcaagcatggcagcattga 470 | ||||||||||||| |||||||| || |||||||||||||||||||||| |||||||| Sbjct: 3033 tatcccatctcttgcttctttcaagccgagcaagcccttcctcaagcatggtagcattga 2974 Query: 471 tgctggattctgt 483 |||||| |||||| Sbjct: 2973 tgctggtttctgt 2961 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 94 ttattgagcttaggggaaaaacaatgtat 122 ||||| || |||||||||||||||||||| Sbjct: 3443 ttattaagtttaggggaaaaacaatgtat 3415
>gb|AY320036.1| Oryza sativa (japonica cultivar-group) RNA binding protein Rp120 mRNA, complete cds Length = 2961 Score = 192 bits (97), Expect = 7e-46 Identities = 169/193 (87%) Strand = Plus / Minus Query: 291 ctggagctcgctcttcctcgtcggattcaacgtctccatactgccacaggcgcagccttt 350 |||||||| ||||||||||||| |||||||| || ||||||||||| | ||||||||| Sbjct: 2932 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 2873 Query: 351 ccttcttcgccttctcctggaactgttccaggttctcgagagctgtcttcctctcctttg 410 ||||||| || |||||||||||||||||||| |||| |||||| | ||| |||||| | | Sbjct: 2872 ccttctttgctttctcctggaactgttccagattctggagagcagcctttctctccctag 2813 Query: 411 tgtcccatctcttgcccctttcaagtcgggcaagcccttcctcaagcatggcagcattga 470 | ||||||||||||| |||||||| || |||||||||||||||||||||| |||||||| Sbjct: 2812 tatcccatctcttgcttctttcaagccgagcaagcccttcctcaagcatggtagcattga 2753 Query: 471 tgctggattctgt 483 |||||| |||||| Sbjct: 2752 tgctggtttctgt 2740
>dbj|AK065061.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001J15, full insert sequence Length = 3547 Score = 192 bits (97), Expect = 7e-46 Identities = 169/193 (87%) Strand = Plus / Minus Query: 291 ctggagctcgctcttcctcgtcggattcaacgtctccatactgccacaggcgcagccttt 350 |||||||| ||||||||||||| |||||||| || ||||||||||| | ||||||||| Sbjct: 3151 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 3092 Query: 351 ccttcttcgccttctcctggaactgttccaggttctcgagagctgtcttcctctcctttg 410 ||||||| || |||||||||||||||||||| |||| |||||| | ||| |||||| | | Sbjct: 3091 ccttctttgctttctcctggaactgttccagattctggagagcagcctttctctccctag 3032 Query: 411 tgtcccatctcttgcccctttcaagtcgggcaagcccttcctcaagcatggcagcattga 470 | ||||||||||||| |||||||| || |||||||||||||||||||||| |||||||| Sbjct: 3031 tatcccatctcttgcttctttcaagccgagcaagcccttcctcaagcatggtagcattga 2972 Query: 471 tgctggattctgt 483 |||||| |||||| Sbjct: 2971 tgctggtttctgt 2959 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 94 ttattgagcttaggggaaaaacaatgtat 122 ||||| || |||||||||||||||||||| Sbjct: 3441 ttattaagtttaggggaaaaacaatgtat 3413
>dbj|AK063159.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-D08, full insert sequence Length = 1551 Score = 192 bits (97), Expect = 7e-46 Identities = 169/193 (87%) Strand = Plus / Minus Query: 291 ctggagctcgctcttcctcgtcggattcaacgtctccatactgccacaggcgcagccttt 350 |||||||| ||||||||||||| |||||||| || ||||||||||| | ||||||||| Sbjct: 1169 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 1110 Query: 351 ccttcttcgccttctcctggaactgttccaggttctcgagagctgtcttcctctcctttg 410 ||||||| || |||||||||||||||||||| |||| |||||| | ||| |||||| | | Sbjct: 1109 ccttctttgctttctcctggaactgttccagattctggagagcagcctttctctccctag 1050 Query: 411 tgtcccatctcttgcccctttcaagtcgggcaagcccttcctcaagcatggcagcattga 470 | ||||||||||||| |||||||| || |||||||||||||||||||||| |||||||| Sbjct: 1049 tatcccatctcttgcttctttcaagccgagcaagcccttcctcaagcatggtagcattga 990 Query: 471 tgctggattctgt 483 |||||| |||||| Sbjct: 989 tgctggtttctgt 977 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 94 ttattgagcttaggggaaaaacaatgtat 122 ||||| || |||||||||||||||||||| Sbjct: 1459 ttattaagtttaggggaaaaacaatgtat 1431
>gb|BT016256.1| Zea mays clone Contig89 mRNA sequence Length = 1657 Score = 188 bits (95), Expect = 1e-44 Identities = 155/175 (88%) Strand = Plus / Minus Query: 300 gctcttcctcgtcggattcaacgtctccatactgccacaggcgcagcctttccttcttcg 359 |||| |||||||| |||||||| ||||| |||||||| | ||||||||||||||||| | Sbjct: 1349 gctcgtcctcgtccgattcaacatctccgtactgccaaatccgcagcctttccttctttg 1290 Query: 360 ccttctcctggaactgttccaggttctcgagagctgtcttcctctcctttgtgtcccatc 419 |||| |||||||||||||||||||||| |||||| |||||||||||| | |||||||||| Sbjct: 1289 ccttgtcctggaactgttccaggttctggagagccgtcttcctctccctagtgtcccatc 1230 Query: 420 tcttgcccctttcaagtcgggcaagcccttcctcaagcatggcagcattgatgct 474 |||||| ||||| || ||||||||||||||||||||||||| ||| || ||||| Sbjct: 1229 tcttgcttctttcgagccgggcaagcccttcctcaagcatggtagcgtttatgct 1175
>gb|AY320037.1| Oryza sativa (japonica cultivar-group) RNA binding protein Rp120 gene, complete cds Length = 5478 Score = 147 bits (74), Expect = 4e-32 Identities = 140/162 (86%) Strand = Plus / Minus Query: 291 ctggagctcgctcttcctcgtcggattcaacgtctccatactgccacaggcgcagccttt 350 |||||||| ||||||||||||| |||||||| || ||||||||||| | ||||||||| Sbjct: 5271 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 5212 Query: 351 ccttcttcgccttctcctggaactgttccaggttctcgagagctgtcttcctctcctttg 410 ||||||| || |||||||||||||||||||| |||| |||||| | ||| |||||| | | Sbjct: 5211 ccttctttgctttctcctggaactgttccagattctggagagcagcctttctctccctag 5152 Query: 411 tgtcccatctcttgcccctttcaagtcgggcaagcccttcct 452 | ||||||||||||| |||||||| || ||||||||||||| Sbjct: 5151 tatcccatctcttgcttctttcaagccgagcaagcccttcct 5110 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 450 cctcaagcatggcagcattgatgctggattctgt 483 |||||||||||| |||||||||||||| |||||| Sbjct: 4915 cctcaagcatggtagcattgatgctggtttctgt 4882
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 147 bits (74), Expect = 4e-32 Identities = 140/162 (86%) Strand = Plus / Plus Query: 291 ctggagctcgctcttcctcgtcggattcaacgtctccatactgccacaggcgcagccttt 350 |||||||| ||||||||||||| |||||||| || ||||||||||| | ||||||||| Sbjct: 19118661 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 19118720 Query: 351 ccttcttcgccttctcctggaactgttccaggttctcgagagctgtcttcctctcctttg 410 ||||||| || |||||||||||||||||||| |||| |||||| | ||| |||||| | | Sbjct: 19118721 ccttctttgctttctcctggaactgttccagattctggagagcagcctttctctccctag 19118780 Query: 411 tgtcccatctcttgcccctttcaagtcgggcaagcccttcct 452 | ||||||||||||| |||||||| || ||||||||||||| Sbjct: 19118781 tatcccatctcttgcttctttcaagccgagcaagcccttcct 19118822 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 450 cctcaagcatggcagcattgatgctggattctgt 483 |||||||||||| |||||||||||||| |||||| Sbjct: 19119017 cctcaagcatggtagcattgatgctggtttctgt 19119050 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 94 ttattgagcttaggggaaaaacaatgtat 122 ||||| || |||||||||||||||||||| Sbjct: 19118371 ttattaagtttaggggaaaaacaatgtat 19118399
>dbj|AP004772.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0415B12 Length = 157419 Score = 147 bits (74), Expect = 4e-32 Identities = 140/162 (86%) Strand = Plus / Plus Query: 291 ctggagctcgctcttcctcgtcggattcaacgtctccatactgccacaggcgcagccttt 350 |||||||| ||||||||||||| |||||||| || ||||||||||| | ||||||||| Sbjct: 16910 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 16969 Query: 351 ccttcttcgccttctcctggaactgttccaggttctcgagagctgtcttcctctcctttg 410 ||||||| || |||||||||||||||||||| |||| |||||| | ||| |||||| | | Sbjct: 16970 ccttctttgctttctcctggaactgttccagattctggagagcagcctttctctccctag 17029 Query: 411 tgtcccatctcttgcccctttcaagtcgggcaagcccttcct 452 | ||||||||||||| |||||||| || ||||||||||||| Sbjct: 17030 tatcccatctcttgcttctttcaagccgagcaagcccttcct 17071 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 450 cctcaagcatggcagcattgatgctggattctgt 483 |||||||||||| |||||||||||||| |||||| Sbjct: 17266 cctcaagcatggtagcattgatgctggtttctgt 17299 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 94 ttattgagcttaggggaaaaacaatgtat 122 ||||| || |||||||||||||||||||| Sbjct: 16620 ttattaagtttaggggaaaaacaatgtat 16648
>dbj|AP005749.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0047A17 Length = 149142 Score = 147 bits (74), Expect = 4e-32 Identities = 140/162 (86%) Strand = Plus / Plus Query: 291 ctggagctcgctcttcctcgtcggattcaacgtctccatactgccacaggcgcagccttt 350 |||||||| ||||||||||||| |||||||| || ||||||||||| | ||||||||| Sbjct: 124182 ctggagcttgctcttcctcgtcagattcaacatcaccatactgccagatctgcagccttt 124241 Query: 351 ccttcttcgccttctcctggaactgttccaggttctcgagagctgtcttcctctcctttg 410 ||||||| || |||||||||||||||||||| |||| |||||| | ||| |||||| | | Sbjct: 124242 ccttctttgctttctcctggaactgttccagattctggagagcagcctttctctccctag 124301 Query: 411 tgtcccatctcttgcccctttcaagtcgggcaagcccttcct 452 | ||||||||||||| |||||||| || ||||||||||||| Sbjct: 124302 tatcccatctcttgcttctttcaagccgagcaagcccttcct 124343 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 450 cctcaagcatggcagcattgatgctggattctgt 483 |||||||||||| |||||||||||||| |||||| Sbjct: 124538 cctcaagcatggtagcattgatgctggtttctgt 124571 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 94 ttattgagcttaggggaaaaacaatgtat 122 ||||| || |||||||||||||||||||| Sbjct: 123892 ttattaagtttaggggaaaaacaatgtat 123920
>gb|AY112472.1| Zea mays CL152_1 mRNA sequence Length = 1436 Score = 119 bits (60), Expect = 9e-24 Identities = 93/104 (89%) Strand = Plus / Minus Query: 371 aactgttccaggttctcgagagctgtcttcctctcctttgtgtcccatctcttgcccctt 430 |||||||||||||||| |||||| |||||||||||| | |||||||||||||||| ||| Sbjct: 976 aactgttccaggttctggagagccgtcttcctctccctagtgtcccatctcttgcttctt 917 Query: 431 tcaagtcgggcaagcccttcctcaagcatggcagcattgatgct 474 || || ||||||||||||||||||||||||| ||| || ||||| Sbjct: 916 tcgagccgggcaagcccttcctcaagcatggtagcgtttatgct 873
>gb|BT009474.1| Triticum aestivum clone wr1.pk0030.f12:fis, full insert mRNA sequence Length = 1394 Score = 58.0 bits (29), Expect = 3e-05 Identities = 29/29 (100%) Strand = Plus / Minus Query: 455 agcatggcagcattgatgctggattctgt 483 ||||||||||||||||||||||||||||| Sbjct: 1389 agcatggcagcattgatgctggattctgt 1361
>dbj|AB078603.1| Pisum sativum SN4TDR mRNA for 110 kDa 4SNc-Tudor domain protein, complete cds Length = 3379 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Minus Query: 440 gcaagcccttcctcaagcatggcagcattga 470 ||||| ||||||| ||||||||||||||||| Sbjct: 2986 gcaagtccttcctgaagcatggcagcattga 2956
>dbj|AB055904.1| Pisum sativum SN4TDR mRNA for 110 kDa 4SNc-Tudor domain protein, partial cds Length = 2343 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Minus Query: 440 gcaagcccttcctcaagcatggcagcattga 470 ||||| ||||||| ||||||||||||||||| Sbjct: 1922 gcaagtccttcctgaagcatggcagcattga 1892
>gb|AC092827.8| Homo sapiens 12p BAC RP11-186N14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 117636 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 111 aaaacaatgtatatagttctct 132 |||||||||||||||||||||| Sbjct: 97578 aaaacaatgtatatagttctct 97599
>emb|AL772362.8| Zebrafish DNA sequence from clone CH211-173K16 in linkage group 13, complete sequence Length = 165993 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Minus Query: 175 ttcatataagctctcgactgagtttc 200 |||||||| ||||||||||||||||| Sbjct: 151331 ttcatatatgctctcgactgagtttc 151306
>gb|AC113028.15| Mus musculus chromosome 5, clone RP23-205D3, complete sequence Length = 275646 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 94 ttattgagcttaggggaaaaa 114 ||||||||||||||||||||| Sbjct: 246866 ttattgagcttaggggaaaaa 246886
>gb|AC119906.6| Mus musculus chromosome 5, clone RP24-239D13, complete sequence Length = 257203 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 94 ttattgagcttaggggaaaaa 114 ||||||||||||||||||||| Sbjct: 88447 ttattgagcttaggggaaaaa 88467
>emb|BX629357.1|CNS09SBV Tetraodon nigroviridis BAC sequence Length = 168910 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 162 ttcttactaagttttcatata 182 ||||||||||||||||||||| Sbjct: 141218 ttcttactaagttttcatata 141198
>emb|AL671881.8| Mouse DNA sequence from clone RP23-206E1 on chromosome X, complete sequence Length = 195413 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 74 gtccacaaaggacacagacct 94 ||||||||||||||||||||| Sbjct: 152418 gtccacaaaggacacagacct 152438
>ref|NM_102108.2| Arabidopsis thaliana unknown protein AT1G22610 mRNA, complete cds Length = 3295 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 302 tcttcctcgtcggattcaacgtctccat 329 ||||| ||||||| |||||||||||||| Sbjct: 755 tcttcttcgtcggcttcaacgtctccat 728
>gb|AC157087.2| Mus musculus BAC clone RP23-287O24 from chromosome 9, complete sequence Length = 226149 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 415 ccatctcttgcccctttcaa 434 |||||||||||||||||||| Sbjct: 223814 ccatctcttgcccctttcaa 223833
>gb|BC061968.1| Rattus norvegicus ATPase, Na+/K+ transporting, alpha 1 polypeptide, mRNA (cDNA clone MGC:72546 IMAGE:5598014), complete cds Length = 3700 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 cctttccttcttcgccttct 365 |||||||||||||||||||| Sbjct: 338 cctttccttcttcgccttct 319
>gb|AC157797.5| Mus musculus chromosome 1, clone RP24-149G24, complete sequence Length = 157629 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 462 cagcattgatgctggattct 481 |||||||||||||||||||| Sbjct: 92820 cagcattgatgctggattct 92801
>gb|AC149483.1| Populus trichocarpa clone Pop1-69I13, complete sequence Length = 51685 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 109 gaaaaacaatgtatatagttctct 132 |||||||||| ||||||||||||| Sbjct: 28326 gaaaaacaatatatatagttctct 28303
>gb|AC117215.3| Mus musculus BAC clone RP23-308M1 from 7, complete sequence Length = 192092 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 121 atatagttctcttcttctaatggc 144 |||| ||||||||||||||||||| Sbjct: 99542 atatggttctcttcttctaatggc 99565
>emb|AL139192.8| Human DNA sequence from clone RP11-515I23 on chromosome Xq13.2-21.2 Contains the 5' end of a novel gene, complete sequence Length = 94056 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 401 ctctcctttgtgtcccatct 420 |||||||||||||||||||| Sbjct: 81672 ctctcctttgtgtcccatct 81691
>gb|AY080693.1| Arabidopsis thaliana At1g22610 mRNA sequence Length = 1920 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 302 tcttcctcgtcggattcaacgtctccat 329 ||||| ||||||| |||||||||||||| Sbjct: 746 tcttcttcgtcggcttcaacgtctccat 719
>emb|BX323825.19| Zebrafish DNA sequence from clone DKEYP-51B2 in linkage group 5, complete sequence Length = 185915 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 ataaatatagtctctctttc 164 |||||||||||||||||||| Sbjct: 181778 ataaatatagtctctctttc 181797
>emb|CR938710.1| Medicago truncatula chromosome 5 clone mth2-170k9, COMPLETE SEQUENCE Length = 123977 Score = 40.1 bits (20), Expect = 6.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 355 cttcgccttctcctggaactgttccaggttct 386 |||| ||||||||||||||| |||||||||| Sbjct: 51074 cttcaccttctcctggaactcctccaggttct 51105
>emb|X53234.1|RNNKAA1B Rat NKAA1 gene for Na+/K+ -ATPase alpha1 subunit exon 2 Length = 1813 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 cctttccttcttcgccttct 365 |||||||||||||||||||| Sbjct: 1771 cctttccttcttcgccttct 1752
>gb|AC104455.2| Homo sapiens chromosome 1 clone RP4-682E18, complete sequence Length = 125123 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 tgtatatagttctcttcttc 137 |||||||||||||||||||| Sbjct: 87138 tgtatatagttctcttcttc 87157
>ref|NM_012504.1| Rattus norvegicus ATPase, Na+/K+ transporting, alpha 1 polypeptide (Atp1a1), mRNA Length = 3636 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 cctttccttcttcgccttct 365 |||||||||||||||||||| Sbjct: 327 cctttccttcttcgccttct 308
>gb|AC079389.2| Rattus norvegicus strain Brown Norway chromosome 6 clone RP31-263K14, complete sequence Length = 151836 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 aaaacaatgtatatagttct 130 |||||||||||||||||||| Sbjct: 34730 aaaacaatgtatatagttct 34711
>gb|AC006551.6|AC006551 Arabidopsis thaliana chromosome I BAC F12K8 genomic sequence, complete sequence Length = 107200 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 302 tcttcctcgtcggattcaacgtctccat 329 ||||| ||||||| |||||||||||||| Sbjct: 12990 tcttcttcgtcggcttcaacgtctccat 13017
>gb|AF115319.1|AF115319 Mus musculus Ucp2 gene, promoter sequence Length = 7342 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 121 atatagttctcttcttctaatggc 144 |||| ||||||||||||||||||| Sbjct: 3933 atatggttctcttcttctaatggc 3910
>emb|BX465852.6| Zebrafish DNA sequence from clone CH211-139A5 in linkage group 5, complete sequence Length = 160041 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 ataaatatagtctctctttc 164 |||||||||||||||||||| Sbjct: 88307 ataaatatagtctctctttc 88326
>emb|BX815537.1|CNS0AEKP Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS70ZB10 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2808 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 302 tcttcctcgtcggattcaacgtctccat 329 ||||| ||||||| |||||||||||||| Sbjct: 687 tcttcttcgtcggcttcaacgtctccat 660
>gb|AC064837.6| Homo sapiens BAC clone RP11-693G13 from 2, complete sequence Length = 111857 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 tcttctaatggcataaatat 152 |||||||||||||||||||| Sbjct: 84384 tcttctaatggcataaatat 84403
>gb|AC017081.8| Homo sapiens BAC clone RP11-470J24 from 2, complete sequence Length = 149462 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 ccaaaactttcatatctaaa 229 |||||||||||||||||||| Sbjct: 29599 ccaaaactttcatatctaaa 29580
>gb|AC112484.8| Homo sapiens 3 BAC RP11-723O4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 185470 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 206 gtgtccaaaactttcatatc 225 |||||||||||||||||||| Sbjct: 41312 gtgtccaaaactttcatatc 41293
>gb|AC102777.12| Mus musculus chromosome 1, clone RP23-5K7, complete sequence Length = 195874 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 462 cagcattgatgctggattct 481 |||||||||||||||||||| Sbjct: 137517 cagcattgatgctggattct 137536
>emb|BX908726.21| Zebrafish DNA sequence from clone DKEY-74I2 in linkage group 22, complete sequence Length = 180599 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 390 gagctgtcttcctctccttt 409 |||||||||||||||||||| Sbjct: 92306 gagctgtcttcctctccttt 92287
>emb|CT573422.5| Mouse DNA sequence from clone RP24-76M8 on chromosome 9, complete sequence Length = 193236 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 415 ccatctcttgcccctttcaa 434 |||||||||||||||||||| Sbjct: 168125 ccatctcttgcccctttcaa 168144
>emb|X05882.1|RNATPAR Rat mRNA for sodium/potassium-transporting ATPase alpha-1 chain precursor (atp1a1 gene) Length = 3407 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 cctttccttcttcgccttct 365 |||||||||||||||||||| Sbjct: 104 cctttccttcttcgccttct 85
>dbj|AP002428.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-99C10, complete sequences Length = 175110 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 213 aaactttcatatctaaacca 232 |||||||||||||||||||| Sbjct: 139050 aaactttcatatctaaacca 139031
>dbj|AP000923.5| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-752D5, complete sequences Length = 170973 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 213 aaactttcatatctaaacca 232 |||||||||||||||||||| Sbjct: 31136 aaactttcatatctaaacca 31117
>gb|AC139317.4| Mus musculus BAC clone RP24-495N6 from 15, complete sequence Length = 182415 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 348 tttccttcttcgccttctcc 367 |||||||||||||||||||| Sbjct: 98222 tttccttcttcgccttctcc 98203
>gb|AC151839.2| Mus musculus BAC clone RP23-191M5 from 7, complete sequence Length = 232568 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 121 atatagttctcttcttctaatggc 144 |||| ||||||||||||||||||| Sbjct: 42584 atatggttctcttcttctaatggc 42607
>gb|AC147742.13| Mus musculus chromosome 7, clone RP23-202M23, complete sequence Length = 194167 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 121 atatagttctcttcttctaatggc 144 |||| ||||||||||||||||||| Sbjct: 78320 atatggttctcttcttctaatggc 78343
>gb|AC170255.8| Mus musculus chromosome 1, clone RP23-359K18, complete sequence Length = 226189 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 462 cagcattgatgctggattct 481 |||||||||||||||||||| Sbjct: 148645 cagcattgatgctggattct 148626
>gb|M28647.1|RATNALPH1 Rattus norvegicus Na,K-ATPase alpha-1 subunit mRNA, complete cds Length = 3599 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 cctttccttcttcgccttct 365 |||||||||||||||||||| Sbjct: 350 cctttccttcttcgccttct 331
>gb|M14511.1|RATATPA1 Rat Na+,K+-ATPase alpha isoform catalytic subunit mRNA, complete cds Length = 3636 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 cctttccttcttcgccttct 365 |||||||||||||||||||| Sbjct: 327 cctttccttcttcgccttct 308 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,225,050 Number of Sequences: 3902068 Number of extensions: 5225050 Number of successful extensions: 100339 Number of sequences better than 10.0: 53 Number of HSP's better than 10.0 without gapping: 53 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 100176 Number of HSP's gapped (non-prelim): 163 length of query: 483 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 461 effective length of database: 17,147,199,772 effective search space: 7904859094892 effective search space used: 7904859094892 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
